Wall clock time and date at job start Wed Apr 1 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99784 * 2 1 4 4 C 1.53003 * 109.47046 * 90.00583 * 3 2 1 5 5 C 1.53001 * 109.47089 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47051 * 179.97438 * 5 4 3 7 7 C 1.46896 * 110.99813 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.52525 * 325.00037 * 7 6 5 9 9 C 1.53244 * 109.52249 * 204.87464 * 7 6 5 10 10 C 1.53238 * 108.56862 * 184.42142 * 9 7 6 11 11 C 1.50584 * 109.16457 * 55.61034 * 10 9 7 12 12 O 1.21230 * 119.35921 * 150.92505 * 11 10 9 13 13 N 1.34144 * 121.27781 * 330.91053 * 11 10 9 14 14 C 1.34139 * 122.59135 * 0.54443 * 13 11 10 15 15 O 1.21222 * 119.36101 * 179.45758 * 14 13 11 16 16 C 1.34779 * 119.99869 * 180.02562 * 2 1 3 17 17 O 1.21285 * 119.99680 * 179.97438 * 16 2 1 18 18 C 1.50690 * 119.99980 * 359.97438 * 16 2 1 19 19 S 1.81006 * 109.47181 * 179.97438 * 18 16 2 20 20 C 1.76194 * 100.00136 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00063 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99865 * 180.02562 * 20 19 18 23 23 N 1.31640 * 119.99854 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00245 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47087 * 90.00135 * 24 22 20 26 26 H 1.48498 * 109.47181 * 209.99959 * 24 22 20 27 27 H 1.48498 * 109.47062 * 330.00294 * 24 22 20 28 28 H 1.09000 * 109.47462 * 89.99883 * 1 2 3 29 29 H 1.09003 * 109.47289 * 209.99749 * 1 2 3 30 30 H 1.09003 * 109.46889 * 329.99462 * 1 2 3 31 31 H 1.08992 * 109.47621 * 330.00138 * 3 2 1 32 32 H 1.09001 * 109.46905 * 210.00161 * 3 2 1 33 33 H 1.09006 * 109.47292 * 59.99401 * 4 3 2 34 34 H 1.09001 * 109.46924 * 299.99567 * 4 3 2 35 35 H 1.08998 * 109.46731 * 60.00121 * 5 4 3 36 36 H 1.09001 * 109.47193 * 299.99780 * 5 4 3 37 37 H 1.00905 * 110.99534 * 56.04441 * 6 5 4 38 38 H 1.09005 * 109.61758 * 304.14612 * 9 7 6 39 39 H 1.09004 * 109.62000 * 64.50688 * 9 7 6 40 40 H 1.08997 * 109.52009 * 175.52107 * 10 9 7 41 41 H 1.09006 * 109.51692 * 295.70393 * 10 9 7 42 42 H 0.97006 * 118.69851 * 180.53996 * 13 11 10 43 43 H 1.08999 * 109.47914 * 300.00452 * 18 16 2 44 44 H 1.09007 * 109.47339 * 60.00630 * 18 16 2 45 45 H 0.96995 * 119.99563 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2180 3.0351 1.4425 6 7 3.4624 3.4594 2.8276 7 6 4.1966 4.7311 2.8668 8 1 4.9005 4.7712 2.0354 9 6 4.9608 4.8407 4.1905 10 6 5.6275 6.2189 4.2565 11 6 4.5791 7.2844 4.0742 12 8 4.7382 8.3695 4.5908 13 7 3.4726 7.0562 3.3509 14 6 3.2259 5.8775 2.7601 15 8 2.2018 5.7322 2.1279 16 6 2.1388 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3853 -2.4722 -0.0005 19 16 2.5615 -3.8481 -0.0020 20 6 1.4415 -5.2082 -0.0026 21 1 0.3762 -5.0304 -0.0016 22 6 1.9282 -6.5080 -0.0032 23 7 1.0914 -7.5242 -0.0031 24 14 3.7707 -6.8154 -0.0042 25 1 4.2597 -6.8974 1.3956 26 1 4.0590 -8.0927 -0.7048 27 1 4.4581 -5.7007 -0.7042 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6084 2.0284 -0.5138 32 1 3.1498 1.1384 -0.5139 33 1 3.0416 0.9506 1.9564 34 1 1.5001 1.8407 1.9564 35 1 2.6292 3.7949 0.9287 36 1 4.1705 2.9044 0.9288 37 1 3.9509 2.7434 3.3442 38 1 4.2671 4.7293 5.0239 39 1 5.7207 4.0607 4.2401 40 1 6.1095 6.3443 5.2260 41 1 6.3723 6.3015 3.4649 42 1 2.8254 7.7719 3.2513 43 1 0.7589 -2.5303 0.8896 44 1 0.7584 -2.5298 -0.8904 45 1 1.4316 -8.4325 -0.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754358819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:22 Heat of formation + Delta-G solvation = -136.736637 kcal Electronic energy + Delta-G solvation = -26669.129406 eV Core-core repulsion = 22618.587094 eV Total energy + Delta-G solvation = -4050.542312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46544 -40.87936 -40.01049 -37.91852 -36.87557 -36.15883 -34.66440 -34.39123 -32.54671 -30.63144 -28.52684 -27.85403 -27.41048 -25.28633 -24.89721 -23.68859 -22.52627 -20.67625 -20.14380 -19.54220 -18.78637 -18.32420 -18.05397 -17.52745 -17.25757 -17.03121 -16.79651 -16.42307 -16.06105 -15.81604 -15.63856 -15.59612 -15.35628 -15.12394 -14.88920 -14.52252 -14.27699 -13.96507 -13.74493 -13.60068 -13.36914 -13.34274 -13.20295 -13.02551 -12.94815 -12.60441 -12.57258 -12.36810 -12.01201 -11.86092 -11.66077 -11.39278 -11.31801 -11.30815 -11.16179 -10.90993 -10.52208 -9.70223 -9.53503 -8.99190 -8.50686 -6.21721 0.48761 0.99322 1.32189 1.47160 1.54007 1.56078 1.69284 1.80954 2.12038 2.26019 2.69318 2.86814 2.87492 3.12369 3.51144 3.60420 3.65687 3.97532 4.04136 4.08926 4.15643 4.21237 4.29823 4.35067 4.41007 4.46356 4.47691 4.66991 4.70348 4.74692 4.84756 4.85702 4.94193 5.02501 5.07969 5.15821 5.23784 5.58506 5.71370 5.73061 5.91138 6.11957 6.25844 6.32716 6.39945 6.81580 6.94303 7.10760 8.61675 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.001735 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.519451 B =16138.771578 C =16953.279180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.609 5.609 3 C 0.117 3.883 4 C -0.120 4.120 5 C 0.069 3.931 6 N -0.681 5.681 7 C 0.070 3.930 8 H 0.112 0.888 9 C -0.119 4.119 10 C -0.131 4.131 11 C 0.526 3.474 12 O -0.547 6.547 13 N -0.675 5.675 14 C 0.530 3.470 15 O -0.521 6.521 16 C 0.532 3.468 17 O -0.559 6.559 18 C -0.108 4.108 19 S -0.174 6.174 20 C -0.530 4.530 21 H 0.061 0.939 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.261 1.261 26 H -0.260 1.260 27 H -0.236 1.236 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.364 0.636 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.409 0.591 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 30.101 6.823 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C -0.005 4.005 4 C -0.159 4.159 5 C -0.061 4.061 6 N -0.316 5.316 7 C -0.044 4.044 8 H 0.129 0.871 9 C -0.156 4.156 10 C -0.171 4.171 11 C 0.317 3.683 12 O -0.423 6.423 13 N -0.339 5.339 14 C 0.318 3.682 15 O -0.394 6.394 16 C 0.319 3.681 17 O -0.438 6.438 18 C -0.259 4.259 19 S 0.053 5.947 20 C -0.677 4.677 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.186 1.186 26 H -0.184 1.184 27 H -0.160 1.160 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.186 0.814 38 H 0.103 0.897 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.248 0.752 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.990 30.505 6.837 32.267 hybrid contribution -0.966 -0.565 -0.353 1.174 sum 7.024 29.940 6.484 31.429 Atomic orbital electron populations 1.22088 0.77174 1.04627 1.03350 1.47841 1.08408 1.04922 1.73099 1.21508 0.97716 0.84021 0.97296 1.21749 1.01274 0.96285 0.96618 1.21912 0.99168 0.96114 0.88876 1.59935 1.52291 1.04408 1.14966 1.21672 0.92204 0.88290 1.02191 0.87102 1.21952 1.00696 0.97975 0.95024 1.22003 0.95999 0.90350 1.08741 1.21738 0.82136 0.89681 0.74699 1.90797 1.77242 1.27552 1.46716 1.44989 1.23893 1.16346 1.48676 1.21497 0.87190 0.83454 0.76039 1.90740 1.27759 1.81869 1.39024 1.19991 0.87309 0.85282 0.75523 1.90659 1.15111 1.87428 1.50595 1.23299 1.01824 0.93849 1.06891 1.84638 1.13737 0.98812 1.97559 1.22460 0.94377 0.92581 1.58315 0.92086 1.25580 1.02851 0.94730 0.92859 1.70023 1.36809 0.99524 1.49114 0.85852 0.80100 0.80063 0.80264 1.18577 1.18386 1.16028 0.91026 0.90852 0.88441 0.87865 0.91287 0.93208 0.91036 0.90439 0.93812 0.81376 0.89749 0.85629 0.84878 0.84340 0.75198 0.87200 0.87314 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.24 127.77 1.31 2.51 16 2 N -0.61 -14.83 2.87 -846.76 -2.43 -17.27 16 3 C 0.12 2.32 5.41 86.38 0.47 2.79 16 4 C -0.12 -2.16 5.80 30.60 0.18 -1.98 16 5 C 0.07 0.97 5.35 86.30 0.46 1.43 16 6 N -0.68 -7.82 6.12 -495.20 -3.03 -10.85 16 7 C 0.07 0.51 2.74 44.22 0.12 0.63 16 8 H 0.11 0.43 7.80 -2.39 -0.02 0.41 16 9 C -0.12 -0.18 5.35 30.76 0.16 -0.01 16 10 C -0.13 -0.21 6.07 29.89 0.18 -0.02 16 11 C 0.53 5.53 7.74 87.72 0.68 6.20 16 12 O -0.55 -10.26 17.88 -2.88 -0.05 -10.31 16 13 N -0.67 -7.66 5.09 -428.63 -2.18 -9.84 16 14 C 0.53 7.07 7.56 87.72 0.66 7.73 16 15 O -0.52 -11.09 15.90 -2.85 -0.05 -11.14 16 16 C 0.53 18.30 7.69 87.65 0.67 18.98 16 17 O -0.56 -23.25 15.44 -3.05 -0.05 -23.29 16 18 C -0.11 -4.09 4.71 71.23 0.34 -3.75 16 19 S -0.17 -8.74 18.55 -56.49 -1.05 -9.79 16 20 C -0.53 -30.74 10.04 67.95 0.68 -30.06 16 21 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 22 C 0.05 2.64 5.50 84.86 0.47 3.11 16 23 N -0.92 -55.56 13.97 21.65 0.30 -55.25 16 24 Si 0.92 44.57 27.74 68.60 1.90 46.47 16 25 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.34 6.44 -2.39 -0.02 1.32 16 30 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 31 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.07 1.60 7.42 -2.39 -0.02 1.58 16 33 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.28 6.72 -2.39 -0.02 1.26 16 36 H 0.04 0.55 8.06 -2.39 -0.02 0.53 16 37 H 0.36 3.17 8.37 -89.69 -0.75 2.42 16 38 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 39 H 0.13 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.14 -0.39 8.14 -2.38 -0.02 -0.41 16 42 H 0.41 4.80 8.79 -92.70 -0.81 3.98 16 43 H 0.11 3.86 7.40 -2.39 -0.02 3.84 16 44 H 0.11 3.85 8.11 -2.39 -0.02 3.83 16 45 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -83.36 387.30 -0.82 -84.19 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -0.57 Total: 9.54 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.38 Total: 7.55 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -7.34 Total: -93.21 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.14 Total: -44.75 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.47 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.79 kcal Total: -83.36 -0.82 -84.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754358819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.550 kcal (2) G-P(sol) polarization free energy of solvation -83.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds