Wall clock time and date at job start Wed Apr 1 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00012 * 2 1 4 4 C 1.50703 * 109.47101 * 179.97438 * 3 2 1 5 5 N 1.28649 * 124.71961 * 89.99867 * 4 3 2 6 6 C 1.33557 * 115.76442 * 180.02562 * 5 4 3 7 7 C 1.47270 * 123.13971 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99890 * 187.39547 * 7 6 5 9 9 N 1.34777 * 120.00044 * 7.38867 * 7 6 5 10 10 C 1.46501 * 119.99861 * 356.25814 * 9 7 6 11 11 C 1.46501 * 120.00009 * 176.25783 * 9 7 6 12 12 C 1.53000 * 109.47033 * 90.00080 * 11 9 7 13 13 H 1.09005 * 109.47181 * 305.00447 * 12 11 9 14 14 O 1.42904 * 109.47141 * 64.99954 * 12 11 9 15 15 C 1.52999 * 109.47381 * 185.00182 * 12 11 9 16 16 N 1.46496 * 109.47174 * 180.02562 * 15 12 11 17 17 C 1.46502 * 120.00418 * 90.00175 * 16 15 12 18 18 C 1.36938 * 119.99645 * 269.99391 * 16 15 12 19 19 H 1.08003 * 120.00031 * 32.55503 * 18 16 15 20 20 C 1.38815 * 119.99858 * 212.54955 * 18 16 15 21 21 N 1.31614 * 120.00148 * 6.19431 * 20 18 16 22 22 Si 1.86804 * 119.99618 * 186.19584 * 20 18 16 23 23 H 1.48507 * 109.47029 * 90.00255 * 22 20 18 24 24 H 1.48504 * 109.46940 * 209.99503 * 22 20 18 25 25 H 1.48490 * 109.47318 * 330.00089 * 22 20 18 26 26 C 1.35200 * 113.71796 * 0.24088 * 6 5 4 27 27 S 1.70765 * 124.72071 * 269.99912 * 4 3 2 28 28 H 1.09002 * 109.47096 * 60.00394 * 1 2 3 29 29 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47329 * 300.00041 * 1 2 3 31 31 H 1.08997 * 109.47227 * 59.99514 * 3 2 1 32 32 H 1.09002 * 109.47217 * 299.99252 * 3 2 1 33 33 H 1.08994 * 109.47196 * 276.00266 * 10 9 7 34 34 H 1.09000 * 109.46877 * 36.01228 * 10 9 7 35 35 H 1.09003 * 109.46890 * 156.00457 * 10 9 7 36 36 H 1.08995 * 109.46952 * 330.00326 * 11 9 7 37 37 H 1.08993 * 109.47157 * 209.99771 * 11 9 7 38 38 H 0.96699 * 113.99863 * 59.99972 * 14 12 11 39 39 H 1.09008 * 109.46960 * 299.99784 * 15 12 11 40 40 H 1.08998 * 109.47153 * 60.00001 * 15 12 11 41 41 H 1.08997 * 109.47467 * 85.24410 * 17 16 15 42 42 H 1.08998 * 109.47153 * 205.24538 * 17 16 15 43 43 H 1.09003 * 109.46694 * 325.24283 * 17 16 15 44 44 H 0.97001 * 119.99756 * 179.97438 * 21 20 18 45 45 H 1.08007 * 125.58660 * 179.75891 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2434 1.1283 -1.0565 6 6 5.5585 1.0237 -0.8480 7 6 6.5430 0.9449 -1.9404 8 8 7.7113 0.7159 -1.6908 9 7 6.1495 1.1263 -3.2166 10 6 4.7306 1.3204 -3.5251 11 6 7.1408 1.1295 -4.2954 12 6 7.3242 -0.2946 -4.8237 13 1 7.5823 -0.9580 -3.9981 14 8 6.1081 -0.7384 -5.4290 15 6 8.4472 -0.3126 -5.8626 16 7 8.6224 -1.6761 -6.3689 17 6 7.8650 -2.1258 -7.5395 18 6 9.4942 -2.5302 -5.7479 19 1 9.6484 -2.4630 -4.6811 20 6 10.1797 -3.4825 -6.4897 21 7 10.0862 -3.4865 -7.8025 22 14 11.2348 -4.7583 -5.6245 23 1 10.4107 -5.9541 -5.3141 24 1 12.3622 -5.1500 -6.5082 25 1 11.7702 -4.1852 -4.3636 26 6 5.9009 0.9911 0.4595 27 16 4.4816 1.1099 1.4046 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 4.2403 0.3502 -3.6055 34 1 4.2618 1.8998 -2.7298 35 1 4.6341 1.8556 -4.4698 36 1 8.0919 1.5007 -3.9137 37 1 6.7966 1.7752 -5.1032 38 1 5.8174 -0.1933 -6.1729 39 1 8.1891 0.3508 -6.6882 40 1 9.3748 0.0259 -5.4009 41 1 8.3939 -1.8366 -8.4476 42 1 7.7602 -3.2103 -7.5098 43 1 6.8772 -1.6650 -7.5320 44 1 10.5656 -4.1517 -8.3208 45 1 6.9067 0.9064 0.8438 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755808408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:21 Heat of formation + Delta-G solvation = -37.132376 kcal Electronic energy + Delta-G solvation = -27978.465286 eV Core-core repulsion = 23932.242140 eV Total energy + Delta-G solvation = -4046.223147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84469 -39.07876 -38.12352 -37.25619 -35.24874 -34.37808 -31.97567 -31.29198 -29.81461 -28.57333 -26.82444 -26.56994 -26.17587 -25.59380 -24.16325 -22.04970 -21.00844 -20.51147 -19.77877 -18.43760 -17.08937 -16.77728 -16.60823 -16.32104 -16.13139 -15.94153 -15.71289 -14.98488 -14.87761 -14.67740 -14.30910 -14.25974 -13.60853 -13.45266 -13.17517 -13.03222 -12.82953 -12.74484 -12.68838 -12.52754 -12.02186 -11.91143 -11.76446 -11.35374 -11.05787 -10.81497 -10.59141 -10.43047 -10.29433 -10.27750 -10.15360 -9.99080 -9.96238 -9.84262 -9.71293 -9.59942 -9.26977 -8.48990 -8.25666 -6.44484 -5.64917 -3.17793 0.17202 0.87785 1.27737 1.70145 3.00944 3.21033 3.38293 3.45467 3.50757 3.53976 3.83933 4.38303 4.57684 4.61740 4.79118 4.85367 4.88225 4.95082 5.00721 5.03433 5.21910 5.25904 5.33966 5.41027 5.49976 5.52215 5.84836 5.95745 5.99806 6.05115 6.13444 6.20510 6.54487 6.64153 6.74154 6.88596 6.99769 7.09747 7.44857 7.49459 7.78823 7.92446 8.19033 8.29933 8.57656 9.35921 9.95878 10.50152 11.40536 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002470 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.216131 B =11333.004373 C =11675.677981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.142 3.858 4 C 0.007 3.993 5 N -0.414 5.414 6 C 0.017 3.983 7 C 0.586 3.414 8 O -0.532 6.532 9 N -0.587 5.587 10 C 0.081 3.919 11 C 0.084 3.916 12 C 0.071 3.929 13 H 0.096 0.904 14 O -0.548 6.548 15 C 0.126 3.874 16 N -0.590 5.590 17 C 0.167 3.833 18 C -0.255 4.255 19 H 0.062 0.938 20 C 0.008 3.992 21 N -0.906 5.906 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.221 4.221 27 S 0.232 5.768 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.357 0.643 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.014 0.986 42 H 0.046 0.954 43 H 0.000 1.000 44 H 0.252 0.748 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.524 15.951 17.511 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.063 3.937 4 C -0.271 4.271 5 N -0.132 5.132 6 C -0.118 4.118 7 C 0.371 3.629 8 O -0.409 6.409 9 N -0.318 5.318 10 C -0.062 4.062 11 C -0.040 4.040 12 C 0.008 3.992 13 H 0.114 0.886 14 O -0.351 6.351 15 C -0.002 4.002 16 N -0.311 5.311 17 C 0.023 3.977 18 C -0.385 4.385 19 H 0.079 0.921 20 C -0.191 4.191 21 N -0.550 5.550 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.363 4.363 27 S 0.489 5.511 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.202 0.798 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.018 0.982 44 H 0.062 0.938 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.141 15.110 18.463 31.223 hybrid contribution 1.022 -0.278 -0.851 1.358 sum -19.120 14.832 17.613 29.929 Atomic orbital electron populations 1.22815 0.79867 1.03483 1.00295 1.87992 1.20372 1.26121 1.95499 1.20743 0.84252 0.86227 1.02517 1.26783 1.00902 1.07108 0.92316 1.67269 1.03229 1.12893 1.29791 1.20473 0.89874 1.07836 0.93655 1.17079 0.86353 0.77716 0.81775 1.90850 1.17470 1.49163 1.83386 1.47559 1.09025 1.69669 1.05504 1.22248 0.80013 1.02521 1.01449 1.22449 0.92957 0.99553 0.88994 1.23266 0.86181 0.92607 0.97142 0.88570 1.86654 1.41340 1.57123 1.49980 1.21301 0.96027 0.88454 0.94464 1.43594 1.46859 1.07472 1.33215 1.20713 0.89826 0.98529 0.88659 1.19138 1.16611 1.11744 0.91046 0.92051 1.25233 0.98013 1.00607 0.95263 1.70021 1.44915 1.36054 1.04051 0.86275 0.79993 0.81664 0.78754 1.21434 1.21669 1.20322 1.26698 1.06322 1.06405 0.96855 1.82762 0.94693 1.62738 1.10892 0.93475 0.89036 0.93744 0.90845 0.89893 0.92099 0.88547 0.92363 0.89173 0.90401 0.79824 0.94500 0.92550 0.96770 0.93484 0.98199 0.93793 0.79057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.37 10.69 -35.23 -0.38 -3.75 16 3 C 0.14 0.98 6.51 36.01 0.23 1.21 16 4 C 0.01 0.07 6.97 -13.61 -0.09 -0.02 16 5 N -0.41 -5.05 6.75 -8.51 -0.06 -5.11 16 6 C 0.02 0.23 6.49 -84.53 -0.55 -0.32 16 7 C 0.59 9.77 7.64 -12.59 -0.10 9.67 16 8 O -0.53 -10.47 16.35 5.24 0.09 -10.38 16 9 N -0.59 -8.89 2.84 -182.91 -0.52 -9.41 16 10 C 0.08 1.00 9.14 59.85 0.55 1.55 16 11 C 0.08 1.28 5.08 -4.04 -0.02 1.26 16 12 C 0.07 1.36 3.48 -26.73 -0.09 1.26 16 13 H 0.10 2.25 8.14 -51.93 -0.42 1.82 16 14 O -0.55 -10.25 11.54 -35.23 -0.41 -10.66 16 15 C 0.13 2.70 5.38 -4.04 -0.02 2.68 16 16 N -0.59 -15.71 2.81 -181.12 -0.51 -16.22 16 17 C 0.17 4.34 8.78 59.85 0.53 4.86 16 18 C -0.26 -7.51 9.56 -15.06 -0.14 -7.66 16 19 H 0.06 1.82 7.84 -52.48 -0.41 1.41 16 20 C 0.01 0.22 5.16 -17.43 -0.09 0.13 16 21 N -0.91 -27.66 11.03 55.49 0.61 -27.05 16 22 Si 0.90 23.12 29.56 -169.99 -5.02 18.09 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 26 C -0.22 -2.47 10.62 29.65 0.31 -2.16 16 27 S 0.23 1.83 22.92 -107.50 -2.46 -0.63 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.12 5.22 -51.93 -0.27 0.85 16 35 H 0.06 0.59 7.83 -51.93 -0.41 0.19 16 36 H 0.09 1.44 7.47 -51.93 -0.39 1.05 16 37 H 0.08 0.95 7.85 -51.93 -0.41 0.55 16 38 H 0.36 5.28 8.81 45.56 0.40 5.68 16 39 H 0.04 0.70 8.07 -51.92 -0.42 0.28 16 40 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 41 H 0.01 0.38 7.74 -51.93 -0.40 -0.02 16 42 H 0.05 1.33 7.17 -51.93 -0.37 0.96 16 43 H 0.00 -0.01 6.81 -51.93 -0.35 -0.36 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.19 1.97 8.04 -52.48 -0.42 1.55 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -37.18 387.82 -7.15 -44.33 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.96 Total: 1.19 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 1.63 Total: 13.74 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.47 Total: -57.78 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.70 Total: -24.79 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.46 Total: -0.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.18 -7.15 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755808408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.200 kcal (2) G-P(sol) polarization free energy of solvation -37.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds