Wall clock time and date at job start Wed Apr 1 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00012 * 2 1 4 4 C 1.50703 * 109.47101 * 179.97438 * 3 2 1 5 5 N 1.28649 * 124.71961 * 89.99867 * 4 3 2 6 6 C 1.33557 * 115.76442 * 180.02562 * 5 4 3 7 7 C 1.47270 * 123.13971 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99890 * 187.39547 * 7 6 5 9 9 N 1.34777 * 120.00044 * 7.38867 * 7 6 5 10 10 C 1.46501 * 119.99861 * 356.25814 * 9 7 6 11 11 C 1.46501 * 120.00009 * 176.25783 * 9 7 6 12 12 C 1.53000 * 109.47033 * 90.00080 * 11 9 7 13 13 H 1.09005 * 109.47181 * 305.00447 * 12 11 9 14 14 O 1.42904 * 109.47141 * 64.99954 * 12 11 9 15 15 C 1.52999 * 109.47381 * 185.00182 * 12 11 9 16 16 N 1.46496 * 109.47174 * 180.02562 * 15 12 11 17 17 C 1.46502 * 120.00418 * 90.00175 * 16 15 12 18 18 C 1.36938 * 119.99645 * 269.99391 * 16 15 12 19 19 H 1.08003 * 120.00031 * 32.55503 * 18 16 15 20 20 C 1.38815 * 119.99858 * 212.54955 * 18 16 15 21 21 N 1.31614 * 120.00148 * 6.19431 * 20 18 16 22 22 Si 1.86804 * 119.99618 * 186.19584 * 20 18 16 23 23 H 1.48507 * 109.47029 * 90.00255 * 22 20 18 24 24 H 1.48504 * 109.46940 * 209.99503 * 22 20 18 25 25 H 1.48490 * 109.47318 * 330.00089 * 22 20 18 26 26 C 1.35200 * 113.71796 * 0.24088 * 6 5 4 27 27 S 1.70765 * 124.72071 * 269.99912 * 4 3 2 28 28 H 1.09002 * 109.47096 * 60.00394 * 1 2 3 29 29 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47329 * 300.00041 * 1 2 3 31 31 H 1.08997 * 109.47227 * 59.99514 * 3 2 1 32 32 H 1.09002 * 109.47217 * 299.99252 * 3 2 1 33 33 H 1.08994 * 109.47196 * 276.00266 * 10 9 7 34 34 H 1.09000 * 109.46877 * 36.01228 * 10 9 7 35 35 H 1.09003 * 109.46890 * 156.00457 * 10 9 7 36 36 H 1.08995 * 109.46952 * 330.00326 * 11 9 7 37 37 H 1.08993 * 109.47157 * 209.99771 * 11 9 7 38 38 H 0.96699 * 113.99863 * 59.99972 * 14 12 11 39 39 H 1.09008 * 109.46960 * 299.99784 * 15 12 11 40 40 H 1.08998 * 109.47153 * 60.00001 * 15 12 11 41 41 H 1.08997 * 109.47467 * 85.24410 * 17 16 15 42 42 H 1.08998 * 109.47153 * 205.24538 * 17 16 15 43 43 H 1.09003 * 109.46694 * 325.24283 * 17 16 15 44 44 H 0.97001 * 119.99756 * 179.97438 * 21 20 18 45 45 H 1.08007 * 125.58660 * 179.75891 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2434 1.1283 -1.0565 6 6 5.5585 1.0237 -0.8480 7 6 6.5430 0.9449 -1.9404 8 8 7.7113 0.7159 -1.6908 9 7 6.1495 1.1263 -3.2166 10 6 4.7306 1.3204 -3.5251 11 6 7.1408 1.1295 -4.2954 12 6 7.3242 -0.2946 -4.8237 13 1 7.5823 -0.9580 -3.9981 14 8 6.1081 -0.7384 -5.4290 15 6 8.4472 -0.3126 -5.8626 16 7 8.6224 -1.6761 -6.3689 17 6 7.8650 -2.1258 -7.5395 18 6 9.4942 -2.5302 -5.7479 19 1 9.6484 -2.4630 -4.6811 20 6 10.1797 -3.4825 -6.4897 21 7 10.0862 -3.4865 -7.8025 22 14 11.2348 -4.7583 -5.6245 23 1 10.4107 -5.9541 -5.3141 24 1 12.3622 -5.1500 -6.5082 25 1 11.7702 -4.1852 -4.3636 26 6 5.9009 0.9911 0.4595 27 16 4.4816 1.1099 1.4046 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 4.2403 0.3502 -3.6055 34 1 4.2618 1.8998 -2.7298 35 1 4.6341 1.8556 -4.4698 36 1 8.0919 1.5007 -3.9137 37 1 6.7966 1.7752 -5.1032 38 1 5.8174 -0.1933 -6.1729 39 1 8.1891 0.3508 -6.6882 40 1 9.3748 0.0259 -5.4009 41 1 8.3939 -1.8366 -8.4476 42 1 7.7602 -3.2103 -7.5098 43 1 6.8772 -1.6650 -7.5320 44 1 10.5656 -4.1517 -8.3208 45 1 6.9067 0.9064 0.8438 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755808408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:20 Heat of formation + Delta-G solvation = -66.158842 kcal Electronic energy + Delta-G solvation = -27979.723968 eV Core-core repulsion = 23932.242140 eV Total energy + Delta-G solvation = -4047.481829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.83493 -40.13781 -38.93944 -38.57764 -36.87828 -35.99949 -33.35672 -32.72597 -31.37950 -29.21866 -28.23802 -27.76623 -27.55784 -26.83417 -25.36076 -23.58908 -22.34587 -21.93789 -20.69963 -19.48429 -18.76465 -17.80152 -17.63787 -17.34297 -17.19099 -16.89395 -16.76891 -16.57267 -16.29520 -16.12465 -15.57155 -15.40034 -15.03203 -14.77829 -14.63437 -14.48412 -13.97444 -13.81007 -13.67851 -13.39093 -13.13426 -13.07349 -12.89153 -12.85486 -12.64772 -12.51695 -12.33025 -12.27687 -12.11853 -12.02839 -11.83071 -11.40264 -11.23201 -10.79887 -10.72486 -10.64485 -10.53448 -10.06706 -9.60554 -8.57304 -7.87998 -5.44529 -0.63536 0.16398 0.49717 0.75529 1.39902 1.41222 1.51064 1.95354 2.14972 2.45892 2.65137 3.17227 3.24862 3.53076 3.62719 3.73256 3.91461 4.07377 4.14637 4.16626 4.20752 4.36698 4.42663 4.46763 4.56340 4.56683 4.61058 4.65106 4.70030 4.92333 4.94005 4.94106 4.99441 5.15411 5.24228 5.36066 5.55036 5.58481 5.65339 6.12023 6.19129 6.35395 6.38002 6.97750 7.01125 7.14411 7.84441 8.30671 9.14050 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002470 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.216131 B =11333.004373 C =11675.677981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.139 3.861 4 C -0.006 4.006 5 N -0.434 5.434 6 C -0.013 4.013 7 C 0.575 3.425 8 O -0.578 6.578 9 N -0.588 5.588 10 C 0.085 3.915 11 C 0.093 3.907 12 C 0.093 3.907 13 H 0.044 0.956 14 O -0.561 6.561 15 C 0.125 3.875 16 N -0.610 5.610 17 C 0.183 3.817 18 C -0.270 4.270 19 H 0.049 0.951 20 C -0.044 4.044 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.285 1.285 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.238 4.238 27 S 0.325 5.675 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.378 0.622 39 H 0.070 0.930 40 H 0.045 0.955 41 H -0.004 1.004 42 H 0.012 0.988 43 H 0.037 0.963 44 H 0.251 0.749 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.760 17.522 18.847 34.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C 0.060 3.940 4 C -0.284 4.284 5 N -0.152 5.152 6 C -0.148 4.148 7 C 0.361 3.639 8 O -0.459 6.459 9 N -0.317 5.317 10 C -0.057 4.057 11 C -0.031 4.031 12 C 0.030 3.970 13 H 0.063 0.937 14 O -0.367 6.367 15 C -0.002 4.002 16 N -0.333 5.333 17 C 0.038 3.962 18 C -0.400 4.400 19 H 0.067 0.933 20 C -0.240 4.240 21 N -0.577 5.577 22 Si 0.793 3.207 23 H -0.212 1.212 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.381 4.381 27 S 0.583 5.417 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.015 0.985 42 H 0.031 0.969 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -22.442 16.726 19.807 34.289 hybrid contribution 1.572 -0.733 -1.159 2.085 sum -20.870 15.993 18.649 32.236 Atomic orbital electron populations 1.22981 0.78167 1.04009 1.01732 1.87930 1.22321 1.27326 1.95817 1.21004 0.82335 0.85971 1.04692 1.27387 1.02406 1.05827 0.92816 1.67213 1.02513 1.14191 1.31318 1.20184 0.90354 1.10813 0.93460 1.17645 0.86476 0.76820 0.82934 1.90804 1.19470 1.51352 1.84240 1.47686 1.10070 1.68865 1.05064 1.22335 0.78123 1.01956 1.03292 1.22295 0.93333 0.97248 0.90211 1.22703 0.85563 0.93899 0.94864 0.93734 1.86610 1.40721 1.58230 1.51109 1.21476 0.96503 0.86431 0.95813 1.43828 1.46876 1.09233 1.33320 1.20479 0.91273 0.96581 0.87843 1.19306 1.17114 1.12829 0.90800 0.93347 1.25952 0.99406 1.02583 0.96014 1.70154 1.45730 1.36758 1.05105 0.85305 0.78384 0.79102 0.77880 1.21188 1.21003 1.19815 1.26966 1.08312 1.05647 0.97147 1.82399 0.91224 1.59997 1.08035 0.92696 0.89080 0.91619 0.87395 0.88991 0.93960 0.87570 0.89543 0.90205 0.86123 0.77387 0.91210 0.93656 0.98527 0.96921 0.94507 0.93976 0.79056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.47 10.69 -148.98 -1.59 -8.06 16 3 C 0.14 1.53 6.51 71.24 0.46 1.99 16 4 C -0.01 -0.11 6.97 88.58 0.62 0.51 16 5 N -0.43 -10.22 6.75 -180.84 -1.22 -11.44 16 6 C -0.01 -0.35 6.49 40.56 0.26 -0.09 16 7 C 0.57 19.78 7.64 86.62 0.66 20.44 16 8 O -0.58 -24.06 16.35 -4.16 -0.07 -24.12 16 9 N -0.59 -17.64 2.84 -850.84 -2.41 -20.06 16 10 C 0.08 1.98 9.14 127.77 1.17 3.15 16 11 C 0.09 2.75 5.08 86.38 0.44 3.19 16 12 C 0.09 3.56 3.48 30.59 0.11 3.66 16 13 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 14 O -0.56 -20.36 11.54 -148.98 -1.72 -22.08 16 15 C 0.12 5.32 5.38 86.38 0.47 5.79 16 16 N -0.61 -32.95 2.81 -726.93 -2.05 -34.99 16 17 C 0.18 9.53 8.78 127.77 1.12 10.65 16 18 C -0.27 -16.31 9.56 84.03 0.80 -15.50 16 19 H 0.05 2.99 7.84 -2.91 -0.02 2.97 16 20 C -0.04 -2.62 5.16 84.86 0.44 -2.18 16 21 N -0.93 -57.92 11.03 21.65 0.24 -57.68 16 22 Si 0.97 48.45 29.56 68.60 2.03 50.48 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 24 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 26 C -0.24 -5.24 10.62 67.12 0.71 -4.53 16 27 S 0.33 4.37 22.92 -56.49 -1.29 3.07 16 28 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 2.33 5.22 -2.39 -0.01 2.31 16 35 H 0.09 1.50 7.83 -2.39 -0.02 1.48 16 36 H 0.08 2.57 7.47 -2.39 -0.02 2.55 16 37 H 0.12 2.55 7.85 -2.39 -0.02 2.53 16 38 H 0.38 10.08 8.81 -74.06 -0.65 9.43 16 39 H 0.07 2.51 8.07 -2.38 -0.02 2.49 16 40 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 41 H 0.00 -0.19 7.74 -2.39 -0.02 -0.21 16 42 H 0.01 0.70 7.17 -2.39 -0.02 0.68 16 43 H 0.04 1.61 6.81 -2.39 -0.02 1.59 16 44 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.19 4.04 8.04 -2.91 -0.02 4.02 16 Total: -1.00 -84.59 387.82 0.78 -83.81 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.36 Total: 12.54 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 8.51 Total: 28.53 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -5.44 Total: -124.18 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -3.38 Total: -54.27 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.29 Total: 3.07 kcal Total: -84.59 0.78 -83.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755808408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.654 kcal (2) G-P(sol) polarization free energy of solvation -84.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds