Wall clock time and date at job start Wed Apr 1 2020 02:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34777 * 119.99611 * 2 1 4 4 O 1.21282 * 120.00345 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99614 * 179.97438 * 3 2 1 6 6 C 1.50696 * 109.47192 * 180.02562 * 5 3 2 7 7 O 1.21284 * 120.00109 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00137 * 179.97438 * 6 5 3 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.85127 * 336.19946 * 9 8 6 11 11 C 1.53786 * 113.61017 * 107.50857 * 9 8 6 12 12 C 1.53775 * 87.07996 * 139.98085 * 11 9 8 13 13 H 1.08999 * 113.69649 * 89.12362 * 12 11 9 14 14 C 1.53002 * 113.61376 * 220.01540 * 12 11 9 15 15 N 1.46495 * 109.47110 * 272.49812 * 14 12 11 16 16 C 1.34784 * 119.99926 * 180.02562 * 15 14 12 17 17 O 1.21276 * 119.99740 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99951 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47064 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99905 * 180.02562 * 19 18 16 21 21 H 1.08007 * 120.00242 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00164 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99543 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00176 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47242 * 60.00065 * 24 22 20 26 26 H 1.48503 * 109.47192 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47372 * 299.99745 * 24 22 20 28 28 C 1.53780 * 113.61267 * 205.00064 * 9 8 6 29 29 H 1.09002 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46835 * 299.99888 * 1 2 3 31 31 H 1.08996 * 109.46804 * 60.00064 * 1 2 3 32 32 H 0.96996 * 120.00120 * 180.02562 * 2 1 3 33 33 H 1.09004 * 109.47103 * 60.00237 * 5 3 2 34 34 H 1.09000 * 109.47247 * 300.00115 * 5 3 2 35 35 H 0.96995 * 120.00018 * 0.27749 * 8 6 5 36 36 H 1.09000 * 113.60786 * 254.52683 * 11 9 8 37 37 H 1.08992 * 113.61826 * 25.42866 * 11 9 8 38 38 H 1.08993 * 109.46993 * 32.50110 * 14 12 11 39 39 H 1.09007 * 109.46828 * 152.49611 * 14 12 11 40 40 H 0.97002 * 120.00352 * 359.97438 * 15 14 12 41 41 H 1.08998 * 109.47006 * 299.99842 * 18 16 15 42 42 H 1.08999 * 109.47156 * 59.99789 * 18 16 15 43 43 H 0.96997 * 119.99932 * 179.97438 * 23 22 20 44 44 H 1.09001 * 113.61735 * 334.56911 * 28 9 8 45 45 H 1.09000 * 113.61107 * 105.47527 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1482 2.5880 0.0011 7 8 3.3601 3.5099 0.0005 8 7 5.4733 2.8343 0.0022 9 6 5.9616 4.2156 0.0021 10 1 5.2366 4.9208 -0.4041 11 6 6.5654 4.6555 1.3463 12 6 7.6488 5.3822 0.5323 13 1 7.3868 6.4076 0.2714 14 6 9.0508 5.2618 1.1330 15 7 9.2595 6.3374 2.1054 16 6 10.4313 6.4320 2.7645 17 8 11.3128 5.6265 2.5528 18 6 10.6462 7.5388 3.7645 19 16 12.3047 7.3962 4.4752 20 6 12.2850 8.7717 5.5763 21 1 11.4070 9.3971 5.6436 22 6 13.3982 9.0522 6.3564 23 7 14.4685 8.2903 6.2740 24 14 13.3776 10.5108 7.5231 25 1 12.2816 10.3395 8.5104 26 1 14.6774 10.5925 8.2365 27 1 13.1571 11.7597 6.7505 28 6 7.3714 4.3705 -0.5922 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9501 -0.8400 -0.0004 33 1 4.0096 0.6532 -0.8892 34 1 4.0089 0.6536 0.8908 35 1 6.1036 2.0971 -0.0014 36 1 5.9222 5.3273 1.9148 37 1 6.9492 3.8288 1.9440 38 1 9.1512 4.2974 1.6307 39 1 9.7940 5.3401 0.3394 40 1 8.5545 6.9819 2.2745 41 1 10.5456 8.5030 3.2664 42 1 9.9032 7.4606 4.5582 43 1 15.2466 8.4865 6.8189 44 1 7.9757 3.4659 -0.5244 45 1 7.3791 4.8122 -1.5886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757313452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:01 Heat of formation + Delta-G solvation = -91.734232 kcal Electronic energy + Delta-G solvation = -25791.929285 eV Core-core repulsion = 21743.338424 eV Total energy + Delta-G solvation = -4048.590861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85169 -39.96087 -39.02967 -38.20556 -35.02671 -34.60770 -33.45049 -32.41867 -31.33588 -29.80569 -27.39511 -26.63708 -26.07631 -25.44443 -23.04641 -21.29855 -20.79928 -20.50751 -19.73974 -17.94957 -17.78056 -17.49519 -16.66882 -16.43754 -16.25638 -15.95916 -15.65877 -15.39158 -15.16341 -14.88258 -14.79340 -13.99233 -13.95122 -13.88212 -13.80429 -13.38678 -13.13863 -12.85501 -12.76565 -12.64340 -12.56356 -12.42113 -12.21449 -11.81936 -11.48370 -11.05661 -11.03104 -11.02495 -10.75158 -10.69148 -10.54886 -9.81610 -9.77701 -9.60158 -9.38479 -9.33927 -9.05379 -8.85460 -8.23257 -6.49127 -6.20751 -3.91306 2.16385 2.36363 2.39162 3.01728 3.08586 3.11687 3.24461 3.28470 3.32582 3.71595 4.01956 4.11328 4.21622 4.26218 4.38550 4.45459 4.48165 4.63456 4.66235 4.78601 4.98897 5.02684 5.14365 5.18213 5.20804 5.31932 5.32952 5.39448 5.47733 5.59897 5.67079 5.73587 5.82715 5.88071 5.91370 5.99843 6.15854 6.21997 6.64502 6.93570 7.12185 7.60230 7.73028 7.77258 7.95571 8.35972 8.63046 9.24529 10.86667 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.001393 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.677226 B =20091.932258 C =20549.980941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.509 3.491 4 O -0.491 6.491 5 C -0.167 4.167 6 C 0.512 3.488 7 O -0.495 6.495 8 N -0.723 5.723 9 C 0.124 3.876 10 H 0.116 0.884 11 C -0.147 4.147 12 C -0.121 4.121 13 H 0.101 0.899 14 C 0.134 3.866 15 N -0.738 5.738 16 C 0.531 3.469 17 O -0.520 6.520 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.400 0.600 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.090 0.910 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.378 -18.879 -16.307 34.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.293 3.707 4 O -0.363 6.363 5 C -0.210 4.210 6 C 0.295 3.705 7 O -0.367 6.367 8 N -0.376 5.376 9 C 0.019 3.981 10 H 0.134 0.866 11 C -0.185 4.185 12 C -0.140 4.140 13 H 0.119 0.881 14 C 0.010 3.990 15 N -0.393 5.393 16 C 0.317 3.683 17 O -0.394 6.394 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.174 4.174 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.234 0.766 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.793 -18.784 -16.602 34.563 hybrid contribution -0.759 1.230 1.108 1.821 sum -24.552 -17.554 -15.494 33.927 Atomic orbital electron populations 1.21520 0.79358 1.02180 1.02484 1.45796 1.07865 1.08465 1.77445 1.20045 0.89227 0.84049 0.77425 1.90888 1.69395 1.30432 1.45569 1.21605 0.94903 0.97734 1.06745 1.19982 0.82630 0.90597 0.77246 1.90876 1.54441 1.45362 1.45987 1.45977 1.06658 1.08656 1.76308 1.22512 0.94846 0.83568 0.97173 0.86634 1.23575 0.97436 1.00597 0.96925 1.22609 0.94635 0.99747 0.97003 0.88089 1.21224 0.94966 0.91109 0.91684 1.45997 1.17197 1.32347 1.43718 1.20308 0.81306 0.85811 0.80857 1.90695 1.42205 1.42078 1.64429 1.23536 1.07683 0.99178 1.00064 1.85370 1.07726 1.40267 1.50040 1.22838 1.03704 1.14890 1.27029 0.90978 1.24984 0.94546 0.97217 0.96762 1.70011 1.03846 1.37479 1.39011 0.86227 0.77546 0.81559 0.80190 1.19946 1.20806 1.19931 1.23330 0.95455 0.99822 0.98766 0.90623 0.92180 0.92227 0.76631 0.86026 0.85961 0.76572 0.90722 0.89337 0.91572 0.91486 0.76783 0.89229 0.89242 0.92141 0.89102 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.70 59.85 0.64 1.02 16 2 N -0.74 -3.23 5.71 -67.07 -0.38 -3.62 16 3 C 0.51 4.07 7.82 -10.99 -0.09 3.99 16 4 O -0.49 -6.84 14.18 -18.96 -0.27 -7.10 16 5 C -0.17 -0.72 6.18 -29.04 -0.18 -0.90 16 6 C 0.51 4.39 7.82 -10.99 -0.09 4.30 16 7 O -0.49 -7.05 13.78 -18.96 -0.26 -7.31 16 8 N -0.72 -4.29 5.36 -53.01 -0.28 -4.57 16 9 C 0.12 0.88 4.24 -67.11 -0.28 0.60 16 10 H 0.12 1.04 7.46 -51.93 -0.39 0.65 16 11 C -0.15 -1.11 7.43 -25.92 -0.19 -1.30 16 12 C -0.12 -0.88 3.75 -89.81 -0.34 -1.22 16 13 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 14 C 0.13 1.43 5.51 -4.04 -0.02 1.41 16 15 N -0.74 -9.54 5.56 -60.30 -0.33 -9.88 16 16 C 0.53 9.83 7.85 -10.98 -0.09 9.74 16 17 O -0.52 -11.72 15.86 5.56 0.09 -11.63 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C -0.13 -0.78 7.39 -25.92 -0.19 -0.97 16 29 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.40 0.27 8.83 -40.82 -0.36 -0.09 16 33 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.40 1.12 8.72 -40.82 -0.36 0.77 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 38 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -42.12 397.95 -9.24 -51.35 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.88 Total: -1.08 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.41 Total: 0.75 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.27 Total: -43.55 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.44 Total: -26.04 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -42.12 -9.24 -51.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757313452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.384 kcal (2) G-P(sol) polarization free energy of solvation -42.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds