Wall clock time and date at job start Wed Apr 1 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34777 * 119.99611 * 2 1 4 4 O 1.21282 * 120.00345 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99614 * 179.97438 * 3 2 1 6 6 C 1.50696 * 109.47192 * 180.02562 * 5 3 2 7 7 O 1.21284 * 120.00109 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00137 * 179.97438 * 6 5 3 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.85127 * 336.19946 * 9 8 6 11 11 C 1.53786 * 113.61017 * 107.50857 * 9 8 6 12 12 C 1.53775 * 87.07996 * 139.98085 * 11 9 8 13 13 H 1.08999 * 113.69649 * 89.12362 * 12 11 9 14 14 C 1.53002 * 113.61376 * 220.01540 * 12 11 9 15 15 N 1.46495 * 109.47110 * 272.49812 * 14 12 11 16 16 C 1.34784 * 119.99926 * 180.02562 * 15 14 12 17 17 O 1.21276 * 119.99740 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99951 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47064 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99905 * 180.02562 * 19 18 16 21 21 H 1.08007 * 120.00242 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00164 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99543 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00176 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47242 * 60.00065 * 24 22 20 26 26 H 1.48503 * 109.47192 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47372 * 299.99745 * 24 22 20 28 28 C 1.53780 * 113.61267 * 205.00064 * 9 8 6 29 29 H 1.09002 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46835 * 299.99888 * 1 2 3 31 31 H 1.08996 * 109.46804 * 60.00064 * 1 2 3 32 32 H 0.96996 * 120.00120 * 180.02562 * 2 1 3 33 33 H 1.09004 * 109.47103 * 60.00237 * 5 3 2 34 34 H 1.09000 * 109.47247 * 300.00115 * 5 3 2 35 35 H 0.96995 * 120.00018 * 0.27749 * 8 6 5 36 36 H 1.09000 * 113.60786 * 254.52683 * 11 9 8 37 37 H 1.08992 * 113.61826 * 25.42866 * 11 9 8 38 38 H 1.08993 * 109.46993 * 32.50110 * 14 12 11 39 39 H 1.09007 * 109.46828 * 152.49611 * 14 12 11 40 40 H 0.97002 * 120.00352 * 359.97438 * 15 14 12 41 41 H 1.08998 * 109.47006 * 299.99842 * 18 16 15 42 42 H 1.08999 * 109.47156 * 59.99789 * 18 16 15 43 43 H 0.96997 * 119.99932 * 179.97438 * 23 22 20 44 44 H 1.09001 * 113.61735 * 334.56911 * 28 9 8 45 45 H 1.09000 * 113.61107 * 105.47527 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1482 2.5880 0.0011 7 8 3.3601 3.5099 0.0005 8 7 5.4733 2.8343 0.0022 9 6 5.9616 4.2156 0.0021 10 1 5.2366 4.9208 -0.4041 11 6 6.5654 4.6555 1.3463 12 6 7.6488 5.3822 0.5323 13 1 7.3868 6.4076 0.2714 14 6 9.0508 5.2618 1.1330 15 7 9.2595 6.3374 2.1054 16 6 10.4313 6.4320 2.7645 17 8 11.3128 5.6265 2.5528 18 6 10.6462 7.5388 3.7645 19 16 12.3047 7.3962 4.4752 20 6 12.2850 8.7717 5.5763 21 1 11.4070 9.3971 5.6436 22 6 13.3982 9.0522 6.3564 23 7 14.4685 8.2903 6.2740 24 14 13.3776 10.5108 7.5231 25 1 12.2816 10.3395 8.5104 26 1 14.6774 10.5925 8.2365 27 1 13.1571 11.7597 6.7505 28 6 7.3714 4.3705 -0.5922 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9501 -0.8400 -0.0004 33 1 4.0096 0.6532 -0.8892 34 1 4.0089 0.6536 0.8908 35 1 6.1036 2.0971 -0.0014 36 1 5.9222 5.3273 1.9148 37 1 6.9492 3.8288 1.9440 38 1 9.1512 4.2974 1.6307 39 1 9.7940 5.3401 0.3394 40 1 8.5545 6.9819 2.2745 41 1 10.5456 8.5030 3.2664 42 1 9.9032 7.4606 4.5582 43 1 15.2466 8.4865 6.8189 44 1 7.9757 3.4659 -0.5244 45 1 7.3791 4.8122 -1.5886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757313452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:00 Heat of formation + Delta-G solvation = -126.233803 kcal Electronic energy + Delta-G solvation = -25793.425298 eV Core-core repulsion = 21743.338424 eV Total energy + Delta-G solvation = -4050.086875 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47652 -40.79281 -40.13508 -38.98404 -35.77067 -35.48817 -34.57976 -34.28087 -31.89909 -31.15741 -28.32890 -27.61605 -27.15712 -26.63279 -23.76303 -21.90539 -21.83702 -21.30437 -20.53607 -19.74257 -18.43005 -18.03751 -17.75783 -17.48224 -16.94731 -16.87399 -16.70910 -16.63086 -16.28760 -16.10691 -15.65948 -15.60229 -14.77113 -14.74512 -14.49768 -14.45179 -14.36430 -14.01113 -13.58292 -13.38065 -13.17815 -13.16165 -13.06405 -12.99536 -12.86296 -12.75859 -12.62985 -12.18178 -11.79345 -11.64059 -11.36642 -11.18188 -11.12506 -10.89918 -10.47329 -10.27702 -10.08507 -10.06949 -9.92601 -8.65814 -8.34139 -6.12095 1.27983 1.44122 1.47418 1.57565 1.63919 1.64385 1.75474 1.94630 2.27345 2.34178 2.62803 2.99941 3.32543 3.51348 3.58120 3.62179 3.83114 3.87791 4.04381 4.06357 4.30415 4.31555 4.41632 4.43419 4.48108 4.52530 4.55583 4.62632 4.74275 4.81529 4.88070 4.91303 4.96433 5.07079 5.13258 5.32827 5.42025 5.48059 5.51865 5.67429 6.20052 6.53411 6.59558 6.66750 7.07175 7.27153 7.31799 7.44939 8.74874 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.001393 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.677226 B =20091.932258 C =20549.980941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.724 5.724 3 C 0.498 3.502 4 O -0.562 6.562 5 C -0.154 4.154 6 C 0.503 3.497 7 O -0.561 6.561 8 N -0.707 5.707 9 C 0.121 3.879 10 H 0.094 0.906 11 C -0.146 4.146 12 C -0.112 4.112 13 H 0.109 0.891 14 C 0.134 3.866 15 N -0.713 5.713 16 C 0.533 3.467 17 O -0.566 6.566 18 C -0.132 4.132 19 S -0.149 6.149 20 C -0.549 4.549 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.263 1.263 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.119 4.119 29 H 0.113 0.887 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.422 0.578 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.419 0.581 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.415 0.585 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.107 0.893 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.205 -19.885 -16.659 36.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.378 5.378 3 C 0.283 3.717 4 O -0.439 6.439 5 C -0.196 4.196 6 C 0.289 3.711 7 O -0.437 6.437 8 N -0.361 5.361 9 C 0.016 3.984 10 H 0.112 0.888 11 C -0.184 4.184 12 C -0.131 4.131 13 H 0.127 0.873 14 C 0.010 3.990 15 N -0.367 5.367 16 C 0.318 3.682 17 O -0.445 6.445 18 C -0.283 4.283 19 S 0.078 5.922 20 C -0.697 4.697 21 H 0.100 0.900 22 C -0.189 4.189 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.158 4.158 29 H 0.131 0.869 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.259 0.741 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.257 0.743 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.251 0.749 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.125 0.875 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.629 -19.874 -16.980 35.915 hybrid contribution -0.609 1.444 1.136 1.935 sum -25.238 -18.430 -15.844 35.038 Atomic orbital electron populations 1.21598 0.79462 1.04064 1.00877 1.45701 1.07992 1.08600 1.75526 1.20780 0.90883 0.83795 0.76196 1.90869 1.70986 1.33013 1.49059 1.21661 0.92060 0.95415 1.10466 1.20759 0.82702 0.91793 0.75858 1.90863 1.56131 1.47625 1.49102 1.45850 1.06411 1.08833 1.74959 1.22355 0.95040 0.83990 0.97040 0.88839 1.23566 0.97282 1.00555 0.97045 1.22545 0.92247 1.00801 0.97494 0.87268 1.21397 0.96784 0.89954 0.90819 1.45797 1.15578 1.32798 1.42481 1.20022 0.82326 0.84879 0.80929 1.90682 1.44132 1.43621 1.66045 1.23393 1.02972 1.01017 1.00923 1.85518 1.14262 1.41149 1.51295 1.23187 1.04325 1.14985 1.27217 0.90026 1.26100 0.93914 1.00387 0.98543 1.70174 1.04704 1.39612 1.40218 0.85024 0.77922 0.77479 0.77699 1.18749 1.20299 1.18708 1.23280 0.94164 0.99885 0.98461 0.86877 0.93974 0.93809 0.74075 0.81782 0.82162 0.74345 0.91831 0.89057 0.91867 0.91954 0.74862 0.87335 0.87410 0.91967 0.87487 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.70 127.77 1.37 2.04 16 2 N -0.72 -5.05 5.71 -484.51 -2.77 -7.81 16 3 C 0.50 7.60 7.82 87.66 0.69 8.29 16 4 O -0.56 -16.54 14.18 20.40 0.29 -16.25 16 5 C -0.15 -0.91 6.18 29.10 0.18 -0.73 16 6 C 0.50 8.12 7.82 87.66 0.69 8.81 16 7 O -0.56 -16.67 13.78 20.40 0.28 -16.39 16 8 N -0.71 -6.95 5.36 -440.03 -2.36 -9.31 16 9 C 0.12 1.56 4.24 45.52 0.19 1.76 16 10 H 0.09 1.70 7.46 -2.39 -0.02 1.68 16 11 C -0.15 -1.98 7.43 31.12 0.23 -1.75 16 12 C -0.11 -1.39 3.75 -10.27 -0.04 -1.43 16 13 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 14 C 0.13 2.59 5.51 86.38 0.48 3.06 16 15 N -0.71 -17.11 5.56 -463.06 -2.57 -19.68 16 16 C 0.53 19.29 7.85 87.66 0.69 19.97 16 17 O -0.57 -25.74 15.86 -3.02 -0.05 -25.78 16 18 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 19 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 20 C -0.55 -31.50 9.50 67.95 0.65 -30.85 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.02 0.88 5.49 84.86 0.47 1.35 16 23 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 24 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 28 C -0.12 -1.08 7.39 31.12 0.23 -0.85 16 29 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.42 -0.82 8.83 -92.71 -0.82 -1.64 16 33 H 0.16 -0.43 8.14 -2.38 -0.02 -0.45 16 34 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.42 0.91 8.72 -92.71 -0.81 0.10 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.21 7.90 -2.39 -0.02 1.19 16 38 H 0.06 1.32 7.84 -2.39 -0.02 1.30 16 39 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.41 7.42 8.47 -92.71 -0.79 6.63 16 41 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.11 0.67 8.07 -2.39 -0.02 0.65 16 45 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -99.08 397.95 -1.15 -100.23 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -1.37 Total: 9.53 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.25 Total: 4.90 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -7.41 Total: -92.46 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: 0.52 Total: -58.42 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -99.08 -1.15 -100.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757313452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.000 kcal (2) G-P(sol) polarization free energy of solvation -99.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds