Wall clock time and date at job start Wed Apr 1 2020 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99594 * 2 1 4 4 C 1.34773 * 120.00475 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99943 * 359.97438 * 4 2 1 6 6 C 1.50702 * 120.00415 * 179.97438 * 4 2 1 7 7 C 1.50694 * 109.47232 * 179.97438 * 6 4 2 8 8 O 1.21285 * 120.00168 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00127 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00202 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.64013 * 323.31203 * 10 9 7 12 12 C 1.55154 * 110.71876 * 199.97635 * 10 9 7 13 13 C 1.54910 * 101.58031 * 206.13488 * 12 10 9 14 14 N 1.47426 * 104.83209 * 37.01037 * 13 12 10 15 15 C 1.34775 * 125.64777 * 155.89013 * 14 13 12 16 16 O 1.21276 * 120.00034 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99931 * 359.97438 * 15 14 13 18 18 S 1.81002 * 109.46947 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99831 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00399 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99809 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00022 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99832 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46839 * 90.00295 * 23 21 19 25 25 H 1.48497 * 109.47410 * 210.00190 * 23 21 19 26 26 H 1.48499 * 109.47405 * 330.00896 * 23 21 19 27 27 C 1.47019 * 108.70209 * 335.87354 * 14 13 12 28 28 H 1.09007 * 109.46853 * 239.99104 * 1 2 3 29 29 H 1.08997 * 109.47514 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47510 * 120.00088 * 1 2 3 31 31 H 1.09004 * 109.47443 * 270.00025 * 3 2 1 32 32 H 1.09000 * 109.47507 * 30.00967 * 3 2 1 33 33 H 1.09004 * 109.46891 * 150.00586 * 3 2 1 34 34 H 1.09001 * 109.47011 * 59.99237 * 6 4 2 35 35 H 1.08999 * 109.46727 * 299.99701 * 6 4 2 36 36 H 0.97006 * 119.99659 * 359.97438 * 9 7 6 37 37 H 1.09002 * 111.00945 * 88.06296 * 12 10 9 38 38 H 1.08999 * 111.00353 * 324.20833 * 12 10 9 39 39 H 1.08998 * 110.36709 * 278.17139 * 13 12 10 40 40 H 1.09005 * 110.36466 * 155.84673 * 13 12 10 41 41 H 1.09002 * 109.46910 * 299.99521 * 17 15 14 42 42 H 1.08995 * 109.47630 * 59.99841 * 17 15 14 43 43 H 0.96997 * 120.00069 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.88389 * 120.48020 * 27 14 13 45 45 H 1.09003 * 109.87977 * 241.64361 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1483 -2.5878 -0.0010 8 8 3.3602 -3.5097 0.0000 9 7 5.4734 -2.8341 -0.0020 10 6 5.9618 -4.2153 -0.0013 11 1 5.3193 -4.8497 0.6092 12 6 7.4311 -4.2777 0.4932 13 6 7.9379 -5.5672 -0.1997 14 7 7.2857 -5.5664 -1.5218 15 6 7.7392 -6.1995 -2.6218 16 8 7.1178 -6.1302 -3.6609 17 6 9.0187 -6.9936 -2.5605 18 16 9.3571 -7.7186 -4.1840 19 6 10.8625 -8.5646 -3.8335 20 1 11.2870 -8.5229 -2.8413 21 6 11.5023 -9.2854 -4.8323 22 7 10.9847 -9.3366 -6.0415 23 14 13.0986 -10.1816 -4.4609 24 1 12.7964 -11.5615 -4.0026 25 1 13.9314 -10.2392 -5.6890 26 1 13.8369 -9.4569 -3.3956 27 6 6.0584 -4.7609 -1.4416 28 1 -0.3633 -0.5140 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0284 0.5140 33 1 3.1499 1.1385 0.5138 34 1 4.0096 -0.6533 0.8888 35 1 4.0089 -0.6531 -0.8912 36 1 6.1038 -2.0967 -0.0031 37 1 7.4745 -4.3743 1.5781 38 1 7.9937 -3.4067 0.1573 39 1 7.6389 -6.4468 0.3703 40 1 9.0218 -5.5368 -0.3114 41 1 9.8409 -6.3364 -2.2771 42 1 8.9178 -7.7887 -1.8218 43 1 11.4320 -9.8400 -6.7396 44 1 6.1113 -3.9332 -2.1489 45 1 5.1912 -5.3838 -1.6609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758235916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:36 Heat of formation + Delta-G solvation = -88.249594 kcal Electronic energy + Delta-G solvation = -26783.320826 eV Core-core repulsion = 22734.881070 eV Total energy + Delta-G solvation = -4048.439756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82469 -39.93974 -38.91950 -37.20147 -35.87020 -34.35623 -32.42300 -31.89617 -30.62996 -29.69617 -28.42207 -27.65489 -26.19295 -25.47186 -23.59645 -21.84334 -20.96661 -19.67662 -19.28674 -17.96452 -17.74367 -17.07582 -16.77571 -16.58936 -16.47960 -16.03903 -15.43349 -15.22976 -14.96434 -14.79731 -14.18977 -13.93516 -13.72190 -13.67368 -13.65534 -13.40218 -13.22469 -13.16569 -12.86819 -12.57100 -12.47997 -12.46863 -12.34627 -12.09811 -11.83389 -11.77159 -11.13213 -11.05492 -11.01525 -10.76111 -10.43772 -9.82279 -9.72848 -9.52690 -9.29888 -9.13342 -9.05962 -8.51208 -8.22134 -6.49508 -6.20778 -3.91576 2.21596 2.29577 2.42061 2.78277 3.05633 3.09626 3.22848 3.27417 3.31137 3.62996 3.94163 4.10725 4.20813 4.33366 4.37894 4.45380 4.65256 4.70495 4.72164 4.79296 4.85822 4.97155 5.07781 5.09131 5.12674 5.14274 5.15747 5.39063 5.42766 5.45222 5.60221 5.67494 5.73531 5.85458 5.93446 5.96663 6.13146 6.16004 6.41625 6.83526 7.13840 7.59937 7.65709 7.79345 8.00189 8.35799 8.57001 9.24248 10.86658 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.001700 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.748349 B =16464.788300 C =16858.268622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.629 5.629 3 C 0.076 3.924 4 C 0.510 3.490 5 O -0.488 6.488 6 C -0.163 4.163 7 C 0.511 3.489 8 O -0.488 6.488 9 N -0.725 5.725 10 C 0.137 3.863 11 H 0.106 0.894 12 C -0.137 4.137 13 C 0.102 3.898 14 N -0.626 5.626 15 C 0.548 3.452 16 O -0.513 6.513 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.099 3.901 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.914 25.213 19.259 34.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.366 5.366 3 C -0.067 4.067 4 C 0.296 3.704 5 O -0.359 6.359 6 C -0.206 4.206 7 C 0.295 3.705 8 O -0.359 6.359 9 N -0.379 5.379 10 C 0.032 3.968 11 H 0.124 0.876 12 C -0.176 4.176 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.336 3.664 16 O -0.387 6.387 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.025 4.025 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.755 23.916 17.439 33.073 hybrid contribution 2.156 -0.005 1.414 2.579 sum -12.598 23.911 18.853 32.953 Atomic orbital electron populations 1.21602 0.78777 1.02144 1.02590 1.47789 1.07206 1.06153 1.75498 1.21876 0.97373 0.85388 1.02111 1.20001 0.89187 0.83554 0.77702 1.90891 1.69300 1.30045 1.45682 1.21623 0.95060 0.97373 1.06560 1.20007 0.82404 0.90744 0.77351 1.90902 1.54303 1.45287 1.45389 1.45912 1.06862 1.08165 1.76964 1.21947 0.95443 0.83278 0.96153 0.87626 1.23074 0.94341 0.98866 1.01300 1.22271 0.98827 0.97367 0.83688 1.48453 1.25097 1.52471 1.10435 1.20057 0.86310 0.78370 0.81649 1.90719 1.58314 1.60613 1.29039 1.23506 0.96251 1.01722 1.08181 1.85441 1.30702 1.62720 1.04539 1.22860 1.09260 1.36596 0.99659 0.90914 1.24995 0.98208 0.95942 0.94430 1.70019 1.38978 1.39516 1.01724 0.86164 0.81645 0.79699 0.77952 1.20260 1.20756 1.19707 1.22241 0.88224 0.95657 0.96409 0.92101 0.90696 0.92014 0.92328 0.90829 0.90930 0.86055 0.85961 0.76447 0.89030 0.89823 0.90870 0.89714 0.89281 0.89214 0.92174 0.91307 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.16 59.85 0.61 1.14 16 2 N -0.63 -4.02 3.27 -189.51 -0.62 -4.64 16 3 C 0.08 0.15 10.21 59.85 0.61 0.76 16 4 C 0.51 4.92 7.67 -10.99 -0.08 4.84 16 5 O -0.49 -7.49 14.18 -18.96 -0.27 -7.76 16 6 C -0.16 -0.94 4.74 -29.04 -0.14 -1.08 16 7 C 0.51 5.06 7.82 -10.99 -0.09 4.97 16 8 O -0.49 -7.66 13.90 -18.96 -0.26 -7.93 16 9 N -0.72 -5.23 5.13 -52.04 -0.27 -5.50 16 10 C 0.14 1.27 3.24 -66.10 -0.21 1.06 16 11 H 0.11 1.12 7.69 -51.93 -0.40 0.72 16 12 C -0.14 -0.93 6.69 -24.58 -0.16 -1.09 16 13 C 0.10 1.02 6.69 -2.53 -0.02 1.01 16 14 N -0.63 -9.27 3.33 -170.52 -0.57 -9.84 16 15 C 0.55 10.92 7.87 -10.98 -0.09 10.83 16 16 O -0.51 -12.46 16.19 5.56 0.09 -12.37 16 17 C -0.15 -3.02 5.16 36.01 0.19 -2.84 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 27 C 0.10 1.33 6.62 -3.07 -0.02 1.31 16 28 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.07 0.21 7.79 -51.93 -0.40 -0.19 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.07 0.05 7.92 -51.93 -0.41 -0.36 16 33 H 0.07 0.02 6.44 -51.93 -0.33 -0.31 16 34 H 0.12 0.25 7.40 -51.93 -0.38 -0.13 16 35 H 0.12 0.37 8.11 -51.93 -0.42 -0.05 16 36 H 0.40 1.47 8.52 -40.82 -0.35 1.12 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.47 8.00 -51.93 -0.42 0.05 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 41 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -42.69 390.87 -8.55 -51.24 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -6.83 Total: -3.93 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 0.79 Total: 7.89 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.72 Total: -45.57 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.44 Total: -28.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -42.69 -8.55 -51.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758235916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.010 kcal (2) G-P(sol) polarization free energy of solvation -42.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds