Wall clock time and date at job start Wed Apr 1 2020 02:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99594 * 2 1 4 4 C 1.34773 * 120.00475 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99943 * 359.97438 * 4 2 1 6 6 C 1.50702 * 120.00415 * 179.97438 * 4 2 1 7 7 C 1.50694 * 109.47232 * 179.97438 * 6 4 2 8 8 O 1.21285 * 120.00168 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00127 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00202 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.64013 * 323.31203 * 10 9 7 12 12 C 1.55154 * 110.71876 * 199.97635 * 10 9 7 13 13 C 1.54910 * 101.58031 * 206.13488 * 12 10 9 14 14 N 1.47426 * 104.83209 * 37.01037 * 13 12 10 15 15 C 1.34775 * 125.64777 * 155.89013 * 14 13 12 16 16 O 1.21276 * 120.00034 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99931 * 359.97438 * 15 14 13 18 18 S 1.81002 * 109.46947 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99831 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00399 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99809 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00022 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99832 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46839 * 90.00295 * 23 21 19 25 25 H 1.48497 * 109.47410 * 210.00190 * 23 21 19 26 26 H 1.48499 * 109.47405 * 330.00896 * 23 21 19 27 27 C 1.47019 * 108.70209 * 335.87354 * 14 13 12 28 28 H 1.09007 * 109.46853 * 239.99104 * 1 2 3 29 29 H 1.08997 * 109.47514 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47510 * 120.00088 * 1 2 3 31 31 H 1.09004 * 109.47443 * 270.00025 * 3 2 1 32 32 H 1.09000 * 109.47507 * 30.00967 * 3 2 1 33 33 H 1.09004 * 109.46891 * 150.00586 * 3 2 1 34 34 H 1.09001 * 109.47011 * 59.99237 * 6 4 2 35 35 H 1.08999 * 109.46727 * 299.99701 * 6 4 2 36 36 H 0.97006 * 119.99659 * 359.97438 * 9 7 6 37 37 H 1.09002 * 111.00945 * 88.06296 * 12 10 9 38 38 H 1.08999 * 111.00353 * 324.20833 * 12 10 9 39 39 H 1.08998 * 110.36709 * 278.17139 * 13 12 10 40 40 H 1.09005 * 110.36466 * 155.84673 * 13 12 10 41 41 H 1.09002 * 109.46910 * 299.99521 * 17 15 14 42 42 H 1.08995 * 109.47630 * 59.99841 * 17 15 14 43 43 H 0.96997 * 120.00069 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.88389 * 120.48020 * 27 14 13 45 45 H 1.09003 * 109.87977 * 241.64361 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1483 -2.5878 -0.0010 8 8 3.3602 -3.5097 0.0000 9 7 5.4734 -2.8341 -0.0020 10 6 5.9618 -4.2153 -0.0013 11 1 5.3193 -4.8497 0.6092 12 6 7.4311 -4.2777 0.4932 13 6 7.9379 -5.5672 -0.1997 14 7 7.2857 -5.5664 -1.5218 15 6 7.7392 -6.1995 -2.6218 16 8 7.1178 -6.1302 -3.6609 17 6 9.0187 -6.9936 -2.5605 18 16 9.3571 -7.7186 -4.1840 19 6 10.8625 -8.5646 -3.8335 20 1 11.2870 -8.5229 -2.8413 21 6 11.5023 -9.2854 -4.8323 22 7 10.9847 -9.3366 -6.0415 23 14 13.0986 -10.1816 -4.4609 24 1 12.7964 -11.5615 -4.0026 25 1 13.9314 -10.2392 -5.6890 26 1 13.8369 -9.4569 -3.3956 27 6 6.0584 -4.7609 -1.4416 28 1 -0.3633 -0.5140 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0284 0.5140 33 1 3.1499 1.1385 0.5138 34 1 4.0096 -0.6533 0.8888 35 1 4.0089 -0.6531 -0.8912 36 1 6.1038 -2.0967 -0.0031 37 1 7.4745 -4.3743 1.5781 38 1 7.9937 -3.4067 0.1573 39 1 7.6389 -6.4468 0.3703 40 1 9.0218 -5.5368 -0.3114 41 1 9.8409 -6.3364 -2.2771 42 1 8.9178 -7.7887 -1.8218 43 1 11.4320 -9.8400 -6.7396 44 1 6.1113 -3.9332 -2.1489 45 1 5.1912 -5.3838 -1.6609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758235916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:35 Heat of formation + Delta-G solvation = -121.816382 kcal Electronic energy + Delta-G solvation = -26784.776391 eV Core-core repulsion = 22734.881070 eV Total energy + Delta-G solvation = -4049.895321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60758 -40.99593 -39.88180 -38.39045 -36.49503 -35.31023 -34.58754 -32.75015 -31.57419 -30.87734 -29.14169 -28.40870 -27.64896 -26.68142 -24.64853 -22.57429 -21.78834 -20.72964 -20.21892 -19.60798 -18.58012 -18.23189 -17.71524 -17.43295 -17.18499 -16.88506 -16.77280 -16.62345 -16.29136 -15.89671 -15.68272 -15.33546 -14.63095 -14.54825 -14.39713 -14.25911 -14.22230 -13.92691 -13.70287 -13.50656 -13.46230 -13.33250 -13.16029 -12.92605 -12.88846 -12.84902 -12.74860 -12.62394 -12.60907 -11.87464 -11.72683 -11.16482 -11.14288 -11.05884 -10.54287 -10.28434 -10.19560 -9.78161 -9.65074 -8.69409 -8.34518 -6.14007 1.20574 1.42878 1.43588 1.51524 1.55305 1.59458 1.69411 1.75795 2.06062 2.27175 2.44431 2.99772 3.21405 3.39246 3.45075 3.50514 3.85282 3.89367 4.02559 4.16803 4.23981 4.24564 4.32770 4.35867 4.42953 4.45349 4.46788 4.51013 4.62291 4.73340 4.77748 4.83154 4.90615 4.96941 5.02480 5.08402 5.27236 5.41710 5.46552 5.54752 6.19789 6.32173 6.34912 6.57760 7.05823 7.06537 7.19179 7.36616 8.74900 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.001700 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.748349 B =16464.788300 C =16858.268622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.625 5.625 3 C 0.066 3.934 4 C 0.495 3.505 5 O -0.562 6.562 6 C -0.150 4.150 7 C 0.504 3.496 8 O -0.555 6.555 9 N -0.704 5.704 10 C 0.147 3.853 11 H 0.092 0.908 12 C -0.115 4.115 13 C 0.086 3.914 14 N -0.615 5.615 15 C 0.543 3.457 16 O -0.572 6.572 17 C -0.116 4.116 18 S -0.157 6.157 19 C -0.545 4.545 20 H 0.086 0.914 21 C 0.012 3.988 22 N -0.913 5.913 23 Si 1.001 2.999 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.255 1.255 27 C 0.097 3.903 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.424 0.576 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.170 28.109 22.569 37.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.360 5.360 3 C -0.075 4.075 4 C 0.283 3.717 5 O -0.439 6.439 6 C -0.192 4.192 7 C 0.290 3.710 8 O -0.431 6.431 9 N -0.359 5.359 10 C 0.040 3.960 11 H 0.110 0.890 12 C -0.152 4.152 13 C -0.035 4.035 14 N -0.350 5.350 15 C 0.332 3.668 16 O -0.451 6.451 17 C -0.267 4.267 18 S 0.070 5.930 19 C -0.692 4.692 20 H 0.104 0.896 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.178 1.178 27 C -0.028 4.028 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.188 0.812 35 H 0.176 0.824 36 H 0.263 0.737 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.964 26.938 20.825 36.090 hybrid contribution 1.181 -0.773 0.455 1.483 sum -10.784 26.165 21.280 35.408 Atomic orbital electron populations 1.21665 0.79150 1.03872 1.00920 1.47970 1.07468 1.07004 1.73561 1.22233 0.98381 0.83445 1.03478 1.20797 0.90938 0.83350 0.76649 1.90867 1.70940 1.32778 1.49339 1.21689 0.92108 0.94981 1.10374 1.20820 0.82490 0.91933 0.75775 1.90896 1.56112 1.47629 1.48441 1.45719 1.06642 1.08011 1.75567 1.21737 0.97418 0.84132 0.92732 0.89006 1.23083 0.91450 0.97790 1.02921 1.22760 0.99547 1.00001 0.81217 1.48378 1.25296 1.50468 1.10906 1.19943 0.85951 0.78701 0.82247 1.90694 1.59799 1.62929 1.31629 1.23287 0.97591 1.02315 1.03535 1.85691 1.31877 1.64177 1.11270 1.23201 1.09031 1.36637 1.00376 0.89594 1.26173 1.02371 0.96690 0.93999 1.70196 1.41004 1.40649 1.03060 0.84914 0.76320 0.78274 0.78210 1.19434 1.20342 1.17836 1.22339 0.86274 0.94644 0.99515 0.93557 0.87105 0.94108 0.91301 0.89112 0.88336 0.81233 0.82438 0.73725 0.85531 0.87495 0.89709 0.88220 0.86710 0.87395 0.92006 0.91961 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.16 127.77 1.30 2.31 16 2 N -0.63 -7.08 3.27 -871.87 -2.85 -9.94 16 3 C 0.07 0.02 10.21 127.77 1.30 1.32 16 4 C 0.50 9.35 7.67 87.66 0.67 10.02 16 5 O -0.56 -18.54 14.18 20.41 0.29 -18.25 16 6 C -0.15 -1.28 4.74 29.10 0.14 -1.14 16 7 C 0.50 9.43 7.82 87.65 0.69 10.11 16 8 O -0.56 -18.37 13.90 20.40 0.28 -18.08 16 9 N -0.70 -8.28 5.13 -436.93 -2.24 -10.52 16 10 C 0.15 2.46 3.24 46.18 0.15 2.61 16 11 H 0.09 1.89 7.69 -2.39 -0.02 1.87 16 12 C -0.11 -1.03 6.69 31.99 0.21 -0.82 16 13 C 0.09 1.45 6.69 86.86 0.58 2.03 16 14 N -0.62 -17.78 3.33 -811.79 -2.70 -20.48 16 15 C 0.54 21.99 7.87 87.66 0.69 22.68 16 16 O -0.57 -29.26 16.19 -3.02 -0.05 -29.31 16 17 C -0.12 -4.76 5.16 71.24 0.37 -4.39 16 18 S -0.16 -8.97 20.57 -56.49 -1.16 -10.13 16 19 C -0.54 -31.25 9.50 67.96 0.65 -30.61 16 20 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.70 13.22 21.65 0.29 -56.41 16 23 Si 1.00 43.54 29.55 68.60 2.03 45.56 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 27 C 0.10 2.64 6.62 86.73 0.57 3.22 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.11 0.43 7.79 -2.39 -0.02 0.41 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 32 H 0.09 -0.24 7.92 -2.39 -0.02 -0.25 16 33 H 0.10 -0.47 6.44 -2.38 -0.02 -0.48 16 34 H 0.17 -0.21 7.40 -2.39 -0.02 -0.23 16 35 H 0.16 0.26 8.11 -2.39 -0.02 0.24 16 36 H 0.42 1.12 8.52 -92.70 -0.79 0.33 16 37 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.11 0.56 8.00 -2.39 -0.02 0.54 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.46 7.48 -2.38 -0.02 1.44 16 41 H 0.11 4.09 7.85 -2.39 -0.02 4.07 16 42 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.06 1.77 8.03 -2.39 -0.02 1.75 16 45 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -105.01 390.87 1.88 -103.13 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.22 Total: 5.93 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.79 Total: 18.51 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -7.51 Total: -97.35 kcal Atomic # 8 Polarization: -66.17 SS G_CDS: 0.52 Total: -65.65 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.13 kcal Total: -105.01 1.88 -103.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758235916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.689 kcal (2) G-P(sol) polarization free energy of solvation -105.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds