Wall clock time and date at job start Wed Apr 1 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99789 * 2 1 4 4 C 1.34770 * 120.00028 * 179.97438 * 2 1 3 5 5 O 1.21276 * 120.00438 * 0.02562 * 4 2 1 6 6 C 1.50701 * 120.00004 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.47315 * 180.02562 * 6 4 2 8 8 O 1.21281 * 119.99902 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00117 * 180.02562 * 7 6 4 10 10 C 1.47022 * 125.64746 * 359.97318 * 9 7 6 11 11 C 1.54326 * 107.27070 * 178.96860 * 10 9 7 12 12 C 1.55160 * 102.94129 * 337.80395 * 11 10 9 13 13 H 1.08997 * 111.00680 * 277.39452 * 12 11 10 14 14 N 1.46498 * 111.00609 * 153.57779 * 12 11 10 15 15 C 1.34777 * 119.99828 * 86.17754 * 14 12 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 C 1.47430 * 125.64959 * 180.02562 * 9 7 6 28 28 H 1.08997 * 109.47393 * 269.99934 * 1 2 3 29 29 H 1.09003 * 109.46904 * 30.00702 * 1 2 3 30 30 H 1.09003 * 109.46922 * 150.00125 * 1 2 3 31 31 H 1.08993 * 109.47324 * 239.99544 * 3 2 1 32 32 H 1.09000 * 109.47590 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.46895 * 119.99810 * 3 2 1 34 34 H 1.09003 * 109.46910 * 60.00807 * 6 4 2 35 35 H 1.08993 * 109.47807 * 300.00714 * 6 4 2 36 36 H 1.08997 * 109.88425 * 59.54664 * 10 9 7 37 37 H 1.08997 * 110.01217 * 298.44983 * 10 9 7 38 38 H 1.09005 * 110.72050 * 219.44520 * 11 10 9 39 39 H 1.08998 * 110.87620 * 96.23989 * 11 10 9 40 40 H 0.97001 * 120.00384 * 266.46201 * 14 12 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.36562 * 85.26366 * 27 9 7 45 45 H 1.09004 * 110.35983 * 322.94166 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5326 -2.2175 0.0005 6 6 3.6459 -1.1671 0.0011 7 6 4.1483 -2.5879 0.0010 8 8 3.3602 -3.5098 0.0000 9 7 5.4733 -2.8342 0.0020 10 6 6.5340 -1.8161 0.0026 11 6 7.8849 -2.5619 0.0302 12 6 7.5047 -3.9480 0.6147 13 1 7.4559 -3.9131 1.7030 14 7 8.4412 -4.9816 0.1667 15 6 9.5839 -5.1967 0.8483 16 8 9.8344 -4.5381 1.8354 17 6 10.5504 -6.2557 0.3840 18 16 11.9757 -6.3023 1.4986 19 6 12.9134 -7.5882 0.7425 20 1 12.5408 -8.0780 -0.1451 21 6 14.1314 -7.9711 1.2870 22 7 14.5857 -7.3739 2.3685 23 14 15.1252 -9.3349 0.4858 24 1 16.0429 -8.7504 -0.5249 25 1 15.9175 -10.0444 1.5222 26 1 14.2053 -10.2940 -0.1769 27 6 6.0992 -4.1690 0.0014 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 2.8241 1.3265 -0.8899 32 1 1.4892 2.0973 -0.0005 33 1 2.8241 1.3265 0.8901 34 1 4.0088 -0.6532 0.8912 35 1 4.0096 -0.6534 -0.8887 36 1 6.4411 -1.1845 0.8861 37 1 6.4659 -1.2059 -0.8979 38 1 8.5945 -2.0506 0.6808 39 1 8.2917 -2.6659 -0.9756 40 1 8.2410 -5.5084 -0.6228 41 1 10.0548 -7.2265 0.3876 42 1 10.8863 -6.0231 -0.6266 43 1 15.4366 -7.6418 2.7491 44 1 6.1848 -4.5475 -1.0171 45 1 5.5213 -4.8591 0.6162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758576748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:16 Heat of formation + Delta-G solvation = -90.221221 kcal Electronic energy + Delta-G solvation = -26654.926253 eV Core-core repulsion = 22606.401001 eV Total energy + Delta-G solvation = -4048.525252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87853 -39.92102 -38.96516 -37.39021 -35.83905 -34.20849 -32.44751 -31.91561 -30.77175 -29.63015 -28.52756 -27.82120 -26.20421 -25.49454 -23.71083 -21.69405 -20.64368 -20.25139 -19.11562 -18.02122 -17.88077 -17.13788 -16.78646 -16.57617 -16.32688 -16.16030 -15.33563 -15.22967 -14.92691 -14.81907 -14.51990 -13.90989 -13.86416 -13.68414 -13.57067 -13.29124 -13.25950 -13.15612 -12.98750 -12.77263 -12.61933 -12.46226 -12.44260 -12.25486 -11.98744 -11.61735 -11.10942 -11.07783 -11.04022 -10.77896 -10.44450 -9.84272 -9.73996 -9.49420 -9.15068 -9.09960 -9.04078 -8.94909 -8.27031 -6.52671 -6.23738 -3.94552 2.19515 2.21684 2.40298 2.71971 2.98944 3.05511 3.21304 3.27240 3.31434 3.66397 3.90882 4.03173 4.18564 4.27000 4.46484 4.48794 4.57378 4.69592 4.72730 4.80759 4.86839 4.89780 4.91615 5.07084 5.11721 5.12822 5.13481 5.21647 5.37914 5.45579 5.52053 5.60201 5.75413 5.84699 5.85976 5.93747 5.95795 6.10799 6.51495 6.81471 7.13334 7.57579 7.60089 7.75654 7.95285 8.33308 8.51677 9.21856 10.83688 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.043928 B = 0.001575 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.255036 B =17775.837087 C =18103.028276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.629 5.629 3 C 0.078 3.922 4 C 0.512 3.488 5 O -0.491 6.491 6 C -0.157 4.157 7 C 0.529 3.471 8 O -0.493 6.493 9 N -0.621 5.621 10 C 0.101 3.899 11 C -0.146 4.146 12 C 0.137 3.863 13 H 0.104 0.896 14 N -0.730 5.730 15 C 0.536 3.464 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.104 3.896 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.074 0.926 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.834 19.974 -8.325 32.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.366 5.366 3 C -0.066 4.066 4 C 0.297 3.703 5 O -0.362 6.362 6 C -0.200 4.200 7 C 0.315 3.685 8 O -0.365 6.365 9 N -0.359 5.359 10 C -0.023 4.023 11 C -0.185 4.185 12 C 0.030 3.970 13 H 0.122 0.878 14 N -0.384 5.384 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.019 4.019 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.155 19.994 -6.523 32.027 hybrid contribution 0.464 -1.513 -2.065 2.602 sum -23.691 18.481 -8.588 31.250 Atomic orbital electron populations 1.21656 0.78853 1.03160 1.01925 1.47769 1.07205 1.06182 1.75440 1.21830 0.97510 0.85369 1.01862 1.20005 0.89218 0.83569 0.77472 1.90874 1.69308 1.30074 1.45991 1.21571 0.94707 0.97141 1.06581 1.19599 0.80513 0.90778 0.77563 1.90885 1.53342 1.45521 1.46743 1.48363 1.04843 1.07933 1.74731 1.22095 0.86745 0.91440 1.01971 1.23097 0.96015 0.96264 1.03091 1.21940 0.87225 0.87387 1.00404 0.87806 1.45864 1.21211 1.39181 1.32177 1.20335 0.80921 0.83709 0.82794 1.90705 1.74632 1.48110 1.25335 1.23538 1.01586 0.99399 1.05931 1.85386 1.13541 1.49285 1.35070 1.22870 1.07572 1.22359 1.15657 0.90891 1.24989 0.96634 0.97007 0.94895 1.70013 1.20093 1.40427 1.19750 0.86168 0.79607 0.80853 0.78874 1.20269 1.20738 1.19683 1.22330 0.92659 0.85333 1.01570 0.92737 0.91212 0.90467 0.91950 0.90233 0.91879 0.86029 0.86130 0.90913 0.91021 0.88896 0.89920 0.76483 0.89073 0.89107 0.92165 0.90809 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.41 59.85 0.62 1.11 16 2 N -0.63 -4.03 3.27 -189.52 -0.62 -4.65 16 3 C 0.08 0.17 9.74 59.85 0.58 0.75 16 4 C 0.51 5.01 7.67 -10.99 -0.08 4.92 16 5 O -0.49 -7.46 13.76 -18.96 -0.26 -7.72 16 6 C -0.16 -1.05 4.19 -29.03 -0.12 -1.17 16 7 C 0.53 5.82 7.84 -10.99 -0.09 5.73 16 8 O -0.49 -8.00 14.43 -18.96 -0.27 -8.28 16 9 N -0.62 -5.65 3.33 -170.51 -0.57 -6.22 16 10 C 0.10 0.63 6.49 -3.06 -0.02 0.61 16 11 C -0.15 -1.23 6.64 -24.89 -0.17 -1.40 16 12 C 0.14 1.45 3.32 -65.77 -0.22 1.23 16 13 H 0.10 1.31 7.73 -51.93 -0.40 0.90 16 14 N -0.73 -8.79 5.23 -51.72 -0.27 -9.06 16 15 C 0.54 9.30 7.85 -10.98 -0.09 9.22 16 16 O -0.51 -10.93 15.61 5.55 0.09 -10.84 16 17 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.10 1.01 6.53 -2.52 -0.02 1.00 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16 30 H 0.08 0.59 7.42 -51.93 -0.39 0.20 16 31 H 0.06 0.06 7.85 -51.93 -0.41 -0.34 16 32 H 0.08 0.06 7.79 -51.93 -0.40 -0.34 16 33 H 0.06 0.08 7.85 -51.93 -0.41 -0.33 16 34 H 0.12 0.47 7.86 -51.93 -0.41 0.06 16 35 H 0.12 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 3.71 8.51 -40.82 -0.35 3.36 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 45 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -40.57 392.08 -8.59 -49.16 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.92 Total: -2.06 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 0.83 Total: 6.50 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.72 Total: -45.05 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.45 Total: -26.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.57 -8.59 -49.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758576748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.062 kcal (2) G-P(sol) polarization free energy of solvation -40.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds