Wall clock time and date at job start Wed Apr 1 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99789 * 2 1 4 4 C 1.34770 * 120.00028 * 179.97438 * 2 1 3 5 5 O 1.21276 * 120.00438 * 0.02562 * 4 2 1 6 6 C 1.50701 * 120.00004 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.47315 * 180.02562 * 6 4 2 8 8 O 1.21281 * 119.99902 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00117 * 180.02562 * 7 6 4 10 10 C 1.47022 * 125.64746 * 359.97318 * 9 7 6 11 11 C 1.54326 * 107.27070 * 178.96860 * 10 9 7 12 12 C 1.55160 * 102.94129 * 337.80395 * 11 10 9 13 13 H 1.08997 * 111.00680 * 277.39452 * 12 11 10 14 14 N 1.46498 * 111.00609 * 153.57779 * 12 11 10 15 15 C 1.34777 * 119.99828 * 86.17754 * 14 12 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 C 1.47430 * 125.64959 * 180.02562 * 9 7 6 28 28 H 1.08997 * 109.47393 * 269.99934 * 1 2 3 29 29 H 1.09003 * 109.46904 * 30.00702 * 1 2 3 30 30 H 1.09003 * 109.46922 * 150.00125 * 1 2 3 31 31 H 1.08993 * 109.47324 * 239.99544 * 3 2 1 32 32 H 1.09000 * 109.47590 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.46895 * 119.99810 * 3 2 1 34 34 H 1.09003 * 109.46910 * 60.00807 * 6 4 2 35 35 H 1.08993 * 109.47807 * 300.00714 * 6 4 2 36 36 H 1.08997 * 109.88425 * 59.54664 * 10 9 7 37 37 H 1.08997 * 110.01217 * 298.44983 * 10 9 7 38 38 H 1.09005 * 110.72050 * 219.44520 * 11 10 9 39 39 H 1.08998 * 110.87620 * 96.23989 * 11 10 9 40 40 H 0.97001 * 120.00384 * 266.46201 * 14 12 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.36562 * 85.26366 * 27 9 7 45 45 H 1.09004 * 110.35983 * 322.94166 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5326 -2.2175 0.0005 6 6 3.6459 -1.1671 0.0011 7 6 4.1483 -2.5879 0.0010 8 8 3.3602 -3.5098 0.0000 9 7 5.4733 -2.8342 0.0020 10 6 6.5340 -1.8161 0.0026 11 6 7.8849 -2.5619 0.0302 12 6 7.5047 -3.9480 0.6147 13 1 7.4559 -3.9131 1.7030 14 7 8.4412 -4.9816 0.1667 15 6 9.5839 -5.1967 0.8483 16 8 9.8344 -4.5381 1.8354 17 6 10.5504 -6.2557 0.3840 18 16 11.9757 -6.3023 1.4986 19 6 12.9134 -7.5882 0.7425 20 1 12.5408 -8.0780 -0.1451 21 6 14.1314 -7.9711 1.2870 22 7 14.5857 -7.3739 2.3685 23 14 15.1252 -9.3349 0.4858 24 1 16.0429 -8.7504 -0.5249 25 1 15.9175 -10.0444 1.5222 26 1 14.2053 -10.2940 -0.1769 27 6 6.0992 -4.1690 0.0014 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 2.8241 1.3265 -0.8899 32 1 1.4892 2.0973 -0.0005 33 1 2.8241 1.3265 0.8901 34 1 4.0088 -0.6532 0.8912 35 1 4.0096 -0.6534 -0.8887 36 1 6.4411 -1.1845 0.8861 37 1 6.4659 -1.2059 -0.8979 38 1 8.5945 -2.0506 0.6808 39 1 8.2917 -2.6659 -0.9756 40 1 8.2410 -5.5084 -0.6228 41 1 10.0548 -7.2265 0.3876 42 1 10.8863 -6.0231 -0.6266 43 1 15.4366 -7.6418 2.7491 44 1 6.1848 -4.5475 -1.0171 45 1 5.5213 -4.8591 0.6162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758576748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:15 Heat of formation + Delta-G solvation = -120.999181 kcal Electronic energy + Delta-G solvation = -26656.260886 eV Core-core repulsion = 22606.401001 eV Total energy + Delta-G solvation = -4049.859884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63668 -40.87374 -39.99049 -38.32221 -36.45231 -35.32698 -34.57212 -32.74911 -31.59286 -30.68337 -29.27623 -28.42379 -27.63541 -26.67766 -24.43866 -22.65085 -21.68642 -21.04283 -19.84145 -19.74993 -18.66468 -18.10618 -17.70831 -17.38079 -17.08997 -16.94626 -16.86704 -16.36955 -16.35157 -15.87726 -15.69792 -15.09896 -14.78909 -14.57773 -14.42399 -14.27322 -14.17879 -13.75284 -13.70554 -13.58462 -13.48287 -13.40125 -13.15431 -12.92584 -12.88064 -12.84184 -12.79585 -12.64874 -12.53604 -11.84340 -11.71961 -11.19012 -11.13207 -10.98375 -10.56196 -10.26432 -10.16096 -9.70549 -9.63595 -8.64750 -8.33908 -6.11293 1.25022 1.43038 1.43782 1.53726 1.56641 1.60001 1.66147 1.66494 2.15941 2.28241 2.43667 3.00493 3.23940 3.33098 3.44738 3.57429 3.81994 3.95156 3.99504 4.22020 4.23842 4.25701 4.31295 4.32960 4.41117 4.46543 4.53633 4.53912 4.61700 4.77586 4.82345 4.85211 4.92420 5.02392 5.03752 5.12303 5.18187 5.43225 5.46273 5.55187 6.20831 6.31108 6.42589 6.49009 7.07915 7.08959 7.22246 7.27177 8.75181 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.043928 B = 0.001575 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.255036 B =17775.837087 C =18103.028276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.624 5.624 3 C 0.067 3.933 4 C 0.499 3.501 5 O -0.561 6.561 6 C -0.144 4.144 7 C 0.521 3.479 8 O -0.557 6.557 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.140 4.140 12 C 0.135 3.865 13 H 0.081 0.919 14 N -0.705 5.705 15 C 0.541 3.459 16 O -0.559 6.559 17 C -0.131 4.131 18 S -0.148 6.148 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.260 1.260 27 C 0.109 3.891 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.418 0.582 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.840 21.977 -10.597 34.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.359 5.359 3 C -0.074 4.074 4 C 0.286 3.714 5 O -0.439 6.439 6 C -0.186 4.186 7 C 0.310 3.690 8 O -0.434 6.434 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.179 4.179 12 C 0.028 3.972 13 H 0.099 0.901 14 N -0.359 5.359 15 C 0.327 3.673 16 O -0.437 6.437 17 C -0.282 4.282 18 S 0.079 5.921 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.184 1.184 27 C -0.015 4.015 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.255 0.745 41 H 0.126 0.874 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.169 22.081 -8.838 33.909 hybrid contribution 0.347 -2.033 -1.376 2.480 sum -23.822 20.047 -10.214 32.768 Atomic orbital electron populations 1.21730 0.78977 1.03330 1.02011 1.47941 1.07565 1.06893 1.73498 1.22187 0.98138 0.83508 1.03584 1.20652 0.90635 0.83468 0.76613 1.90851 1.70782 1.32697 1.49533 1.21626 0.92342 0.94570 1.10033 1.20395 0.80314 0.92048 0.76261 1.90869 1.54995 1.47737 1.49756 1.48432 1.05069 1.08216 1.73694 1.22311 0.84023 0.90655 1.04871 1.23053 0.97342 0.94470 1.03051 1.21976 0.87388 0.88392 0.99410 0.90091 1.45554 1.19486 1.39143 1.31693 1.19984 0.81859 0.82976 0.82517 1.90697 1.75879 1.49688 1.27398 1.23382 0.98892 1.01190 1.04775 1.85534 1.17844 1.49807 1.38887 1.23218 1.08022 1.22427 1.15876 0.89946 1.26090 0.97881 0.99655 0.95365 1.70174 1.20705 1.42319 1.21509 0.84979 0.77876 0.77401 0.77887 1.19215 1.20400 1.18366 1.22199 0.91543 0.85971 1.01807 0.92753 0.87965 0.93296 0.89949 0.88559 0.90305 0.82524 0.82021 0.88767 0.87390 0.89885 0.88908 0.74466 0.87424 0.86871 0.92008 0.89329 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.41 127.77 1.33 2.20 16 2 N -0.62 -6.79 3.27 -871.91 -2.85 -9.64 16 3 C 0.07 0.02 9.74 127.77 1.24 1.26 16 4 C 0.50 9.35 7.67 87.66 0.67 10.02 16 5 O -0.56 -18.05 13.76 20.42 0.28 -17.77 16 6 C -0.14 -1.47 4.19 29.10 0.12 -1.35 16 7 C 0.52 10.85 7.84 87.66 0.69 11.54 16 8 O -0.56 -18.81 14.43 20.41 0.29 -18.51 16 9 N -0.62 -9.91 3.33 -811.75 -2.70 -12.61 16 10 C 0.10 0.87 6.49 86.73 0.56 1.43 16 11 C -0.14 -2.01 6.64 31.78 0.21 -1.80 16 12 C 0.13 2.70 3.32 46.39 0.15 2.86 16 13 H 0.08 2.06 7.73 -2.39 -0.02 2.04 16 14 N -0.70 -15.98 5.23 -435.93 -2.28 -18.26 16 15 C 0.54 18.51 7.85 87.66 0.69 19.19 16 16 O -0.56 -24.21 15.61 -3.04 -0.05 -24.25 16 17 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 18 S -0.15 -8.01 20.57 -56.49 -1.16 -9.17 16 19 C -0.55 -30.82 9.50 67.96 0.65 -30.18 16 20 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 21 C 0.01 0.84 5.49 84.86 0.47 1.31 16 22 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 23 Si 1.00 43.17 29.55 68.60 2.03 45.20 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 C 0.11 2.00 6.53 86.86 0.57 2.57 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.37 7.92 -2.39 -0.02 0.36 16 30 H 0.05 0.81 7.42 -2.39 -0.02 0.79 16 31 H 0.08 -0.25 7.85 -2.39 -0.02 -0.27 16 32 H 0.10 -0.26 7.79 -2.39 -0.02 -0.28 16 33 H 0.08 -0.18 7.85 -2.38 -0.02 -0.19 16 34 H 0.16 0.49 7.86 -2.39 -0.02 0.47 16 35 H 0.16 0.29 7.87 -2.39 -0.02 0.27 16 36 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 40 H 0.42 6.76 8.51 -92.71 -0.79 5.97 16 41 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 42 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 43 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 44 H 0.09 1.38 8.00 -2.39 -0.02 1.37 16 45 H 0.07 1.52 8.04 -2.38 -0.02 1.50 16 Total: -1.00 -96.67 392.08 1.85 -94.83 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.21 Total: 10.68 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 7.79 Total: 14.55 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -7.55 Total: -95.56 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: 0.53 Total: -60.53 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -96.67 1.85 -94.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758576748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.173 kcal (2) G-P(sol) polarization free energy of solvation -96.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds