Wall clock time and date at job start Wed Apr 1 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99537 * 2 1 4 4 C 1.34777 * 120.00199 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 2 1 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 2 1 7 7 C 1.50700 * 109.46869 * 179.72354 * 6 4 2 8 8 O 1.21277 * 120.00023 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99464 * 179.97438 * 7 6 4 10 10 C 1.47025 * 125.65408 * 0.02562 * 9 7 6 11 11 C 1.54319 * 107.27273 * 181.02053 * 10 9 7 12 12 C 1.55156 * 102.94167 * 22.19646 * 11 10 9 13 13 H 1.08998 * 111.00784 * 82.60978 * 12 11 10 14 14 N 1.46502 * 111.00439 * 206.42091 * 12 11 10 15 15 C 1.34785 * 119.99920 * 273.54620 * 14 12 11 16 16 O 1.21275 * 119.99604 * 0.02562 * 15 14 12 17 17 C 1.50699 * 119.99682 * 179.97438 * 15 14 12 18 18 S 1.80994 * 109.46854 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00096 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00038 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99890 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47162 * 59.99906 * 23 21 19 25 25 H 1.48504 * 109.47176 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47052 * 299.99843 * 23 21 19 27 27 C 1.47430 * 125.64526 * 179.71570 * 9 7 6 28 28 H 1.09004 * 109.47189 * 269.99454 * 1 2 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 1 2 3 30 30 H 1.09005 * 109.47076 * 149.99913 * 1 2 3 31 31 H 1.09005 * 109.46745 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47469 * 300.00283 * 3 2 1 33 33 H 1.08996 * 109.46798 * 60.00609 * 3 2 1 34 34 H 1.09004 * 109.46965 * 299.72211 * 6 4 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 6 4 2 36 36 H 1.08997 * 109.88284 * 300.44641 * 10 9 7 37 37 H 1.09004 * 109.87485 * 61.60630 * 10 9 7 38 38 H 1.08999 * 110.71599 * 140.55664 * 11 10 9 39 39 H 1.08994 * 110.72547 * 263.65597 * 11 10 9 40 40 H 0.97003 * 119.99961 * 93.54730 * 14 12 11 41 41 H 1.08997 * 109.47309 * 300.00024 * 17 15 14 42 42 H 1.09004 * 109.47249 * 60.00094 * 17 15 14 43 43 H 0.97001 * 120.00530 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36339 * 274.74667 * 27 9 7 45 45 H 1.08997 * 110.36747 * 37.06637 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 0.0057 7 6 4.1482 -2.5879 0.0106 8 8 3.3601 -3.5097 0.0097 9 7 5.4733 -2.8341 0.0161 10 6 6.5341 -1.8160 0.0184 11 6 7.8849 -2.5618 -0.0014 12 6 7.5075 -3.9490 -0.5850 13 1 7.4639 -3.9162 -1.6736 14 7 8.4420 -4.9818 -0.1307 15 6 9.5853 -5.2020 -0.8098 16 8 9.8405 -4.5448 -1.7966 17 6 10.5468 -6.2639 -0.3421 18 16 11.9748 -6.3162 -1.4529 19 6 12.9062 -7.6048 -0.6935 20 1 12.5297 -8.0926 0.1935 21 6 14.1243 -7.9922 -1.2345 22 7 14.5835 -7.3973 -2.3152 23 14 15.1120 -9.3579 -0.4289 24 1 14.3106 -10.6079 -0.4177 25 1 16.3648 -9.5805 -1.1946 26 1 15.4456 -8.9711 0.9655 27 6 6.0992 -4.1689 0.0272 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2691 1.0697 -0.0005 32 1 1.9341 1.8404 -0.8899 33 1 1.9341 1.8403 0.8900 34 1 4.0129 -0.6550 -0.8838 35 1 4.0055 -0.6515 0.8961 36 1 6.4452 -1.1861 -0.8666 37 1 6.4605 -1.2062 0.9189 38 1 8.5975 -2.0517 -0.6496 39 1 8.2857 -2.6610 1.0073 40 1 8.2379 -5.5071 0.6588 41 1 10.8816 -6.0312 0.6688 42 1 10.0477 -7.2330 -0.3455 43 1 15.4349 -7.6678 -2.6931 44 1 6.1807 -4.5411 1.0484 45 1 5.5237 -4.8628 -0.5854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758576749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:20 Heat of formation + Delta-G solvation = -88.554715 kcal Electronic energy + Delta-G solvation = -26656.468668 eV Core-core repulsion = 22608.015682 eV Total energy + Delta-G solvation = -4048.452987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89767 -39.92699 -38.96944 -37.39364 -35.84252 -34.21169 -32.44665 -31.95922 -30.80068 -29.63275 -28.52441 -27.79916 -26.19542 -25.49303 -23.72560 -21.69997 -20.65783 -20.25713 -19.09545 -18.09702 -17.89209 -17.12781 -16.79428 -16.53659 -16.33330 -16.16231 -15.35983 -15.24912 -14.93144 -14.81864 -14.54665 -13.91129 -13.87044 -13.78018 -13.58024 -13.27595 -13.14228 -13.11535 -12.95131 -12.79703 -12.62190 -12.49658 -12.43944 -12.27541 -11.98922 -11.61782 -11.11822 -11.06445 -11.04805 -10.78566 -10.42515 -9.85184 -9.75365 -9.49655 -9.16397 -9.09540 -9.04288 -8.95391 -8.27482 -6.52707 -6.23463 -3.94474 2.19117 2.19829 2.40098 2.71064 2.98731 3.05101 3.22632 3.26857 3.30376 3.66131 3.89986 4.01076 4.18747 4.25894 4.41443 4.49839 4.59463 4.68808 4.76171 4.77709 4.85564 4.89443 4.90874 5.07795 5.11499 5.11831 5.13298 5.20609 5.38441 5.45129 5.51613 5.60019 5.74719 5.84465 5.85450 5.93049 5.94981 6.10658 6.51221 6.81475 7.12530 7.57298 7.59850 7.74757 7.94402 8.33150 8.51453 9.21910 10.83860 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.043895 B = 0.001575 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.734113 B =17776.424006 C =18104.060349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.629 5.629 3 C 0.074 3.926 4 C 0.511 3.489 5 O -0.490 6.490 6 C -0.159 4.159 7 C 0.529 3.471 8 O -0.493 6.493 9 N -0.621 5.621 10 C 0.100 3.900 11 C -0.146 4.146 12 C 0.138 3.862 13 H 0.104 0.896 14 N -0.730 5.730 15 C 0.536 3.464 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.075 3.925 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.104 3.896 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.074 0.926 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.690 19.934 8.038 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.365 5.365 3 C -0.069 4.069 4 C 0.297 3.703 5 O -0.362 6.362 6 C -0.202 4.202 7 C 0.316 3.684 8 O -0.364 6.364 9 N -0.359 5.359 10 C -0.023 4.023 11 C -0.185 4.185 12 C 0.031 3.969 13 H 0.122 0.878 14 N -0.385 5.385 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.019 4.019 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.996 19.955 6.233 31.826 hybrid contribution 0.431 -1.515 2.102 2.627 sum -23.565 18.440 8.336 31.062 Atomic orbital electron populations 1.21602 0.78831 1.03195 1.01917 1.47757 1.07251 1.06146 1.75393 1.21879 0.97356 0.85421 1.02284 1.20045 0.89183 0.83619 0.77469 1.90876 1.69266 1.30083 1.45972 1.21596 0.94834 0.97215 1.06537 1.19584 0.80526 0.90748 0.77584 1.90885 1.53335 1.45507 1.46721 1.48366 1.04836 1.07963 1.74723 1.22110 0.86772 0.91453 1.01945 1.23094 0.96005 0.96271 1.03098 1.21984 0.87208 0.87377 1.00351 0.87769 1.45871 1.21212 1.39242 1.32127 1.20335 0.80902 0.83721 0.82796 1.90703 1.74463 1.48261 1.25350 1.23537 1.01648 0.99359 1.05924 1.85381 1.13581 1.49088 1.35198 1.22828 1.07679 1.22307 1.15722 0.90941 1.24985 0.96596 0.97001 0.94907 1.70002 1.20048 1.40374 1.19865 0.86226 0.78908 0.81189 0.79193 1.19925 1.20799 1.19936 1.22375 0.92635 0.85330 1.01567 0.92748 0.91211 0.90419 0.90244 0.91782 0.91831 0.85977 0.86068 0.90886 0.91034 0.88900 0.89919 0.76481 0.89106 0.89073 0.92107 0.90781 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.48 59.85 0.63 1.13 16 2 N -0.63 -4.05 3.27 -189.51 -0.62 -4.67 16 3 C 0.07 0.17 10.60 59.85 0.63 0.80 16 4 C 0.51 4.98 7.67 -10.98 -0.08 4.90 16 5 O -0.49 -7.43 13.76 -18.96 -0.26 -7.70 16 6 C -0.16 -1.04 3.69 -29.03 -0.11 -1.14 16 7 C 0.53 5.77 7.84 -10.99 -0.09 5.68 16 8 O -0.49 -7.96 14.43 -18.96 -0.27 -8.23 16 9 N -0.62 -5.59 3.32 -170.38 -0.57 -6.16 16 10 C 0.10 0.61 6.48 -3.06 -0.02 0.59 16 11 C -0.15 -1.22 6.64 -24.90 -0.17 -1.39 16 12 C 0.14 1.45 3.33 -65.66 -0.22 1.23 16 13 H 0.10 1.30 7.73 -51.93 -0.40 0.90 16 14 N -0.73 -8.76 5.23 -51.61 -0.27 -9.03 16 15 C 0.54 9.29 7.85 -10.98 -0.09 9.20 16 16 O -0.51 -10.91 15.61 5.56 0.09 -10.82 16 17 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 18 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 19 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 23 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.10 1.00 6.53 -2.41 -0.02 0.99 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 30 H 0.08 0.60 7.42 -51.93 -0.39 0.21 16 31 H 0.08 0.05 5.77 -51.93 -0.30 -0.24 16 32 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 34 H 0.12 0.45 7.79 -51.93 -0.40 0.04 16 35 H 0.12 0.41 7.79 -51.93 -0.40 0.01 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 3.70 8.52 -40.82 -0.35 3.35 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 45 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -40.51 391.07 -8.46 -48.97 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.84 Total: -1.99 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 0.90 Total: 6.48 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.72 Total: -44.98 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.45 Total: -26.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -40.51 -8.46 -48.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758576749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.582 kcal (2) G-P(sol) polarization free energy of solvation -40.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds