Wall clock time and date at job start Wed Apr 1 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99537 * 2 1 4 4 C 1.34777 * 120.00199 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 2 1 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 2 1 7 7 C 1.50700 * 109.46869 * 179.72354 * 6 4 2 8 8 O 1.21277 * 120.00023 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99464 * 179.97438 * 7 6 4 10 10 C 1.47025 * 125.65408 * 0.02562 * 9 7 6 11 11 C 1.54319 * 107.27273 * 181.02053 * 10 9 7 12 12 C 1.55156 * 102.94167 * 22.19646 * 11 10 9 13 13 H 1.08998 * 111.00784 * 82.60978 * 12 11 10 14 14 N 1.46502 * 111.00439 * 206.42091 * 12 11 10 15 15 C 1.34785 * 119.99920 * 273.54620 * 14 12 11 16 16 O 1.21275 * 119.99604 * 0.02562 * 15 14 12 17 17 C 1.50699 * 119.99682 * 179.97438 * 15 14 12 18 18 S 1.80994 * 109.46854 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00096 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00038 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99890 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47162 * 59.99906 * 23 21 19 25 25 H 1.48504 * 109.47176 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47052 * 299.99843 * 23 21 19 27 27 C 1.47430 * 125.64526 * 179.71570 * 9 7 6 28 28 H 1.09004 * 109.47189 * 269.99454 * 1 2 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 1 2 3 30 30 H 1.09005 * 109.47076 * 149.99913 * 1 2 3 31 31 H 1.09005 * 109.46745 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47469 * 300.00283 * 3 2 1 33 33 H 1.08996 * 109.46798 * 60.00609 * 3 2 1 34 34 H 1.09004 * 109.46965 * 299.72211 * 6 4 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 6 4 2 36 36 H 1.08997 * 109.88284 * 300.44641 * 10 9 7 37 37 H 1.09004 * 109.87485 * 61.60630 * 10 9 7 38 38 H 1.08999 * 110.71599 * 140.55664 * 11 10 9 39 39 H 1.08994 * 110.72547 * 263.65597 * 11 10 9 40 40 H 0.97003 * 119.99961 * 93.54730 * 14 12 11 41 41 H 1.08997 * 109.47309 * 300.00024 * 17 15 14 42 42 H 1.09004 * 109.47249 * 60.00094 * 17 15 14 43 43 H 0.97001 * 120.00530 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36339 * 274.74667 * 27 9 7 45 45 H 1.08997 * 110.36747 * 37.06637 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 0.0057 7 6 4.1482 -2.5879 0.0106 8 8 3.3601 -3.5097 0.0097 9 7 5.4733 -2.8341 0.0161 10 6 6.5341 -1.8160 0.0184 11 6 7.8849 -2.5618 -0.0014 12 6 7.5075 -3.9490 -0.5850 13 1 7.4639 -3.9162 -1.6736 14 7 8.4420 -4.9818 -0.1307 15 6 9.5853 -5.2020 -0.8098 16 8 9.8405 -4.5448 -1.7966 17 6 10.5468 -6.2639 -0.3421 18 16 11.9748 -6.3162 -1.4529 19 6 12.9062 -7.6048 -0.6935 20 1 12.5297 -8.0926 0.1935 21 6 14.1243 -7.9922 -1.2345 22 7 14.5835 -7.3973 -2.3152 23 14 15.1120 -9.3579 -0.4289 24 1 14.3106 -10.6079 -0.4177 25 1 16.3648 -9.5805 -1.1946 26 1 15.4456 -8.9711 0.9655 27 6 6.0992 -4.1689 0.0272 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2691 1.0697 -0.0005 32 1 1.9341 1.8404 -0.8899 33 1 1.9341 1.8403 0.8900 34 1 4.0129 -0.6550 -0.8838 35 1 4.0055 -0.6515 0.8961 36 1 6.4452 -1.1861 -0.8666 37 1 6.4605 -1.2062 0.9189 38 1 8.5975 -2.0517 -0.6496 39 1 8.2857 -2.6610 1.0073 40 1 8.2379 -5.5071 0.6588 41 1 10.8816 -6.0312 0.6688 42 1 10.0477 -7.2330 -0.3455 43 1 15.4349 -7.6678 -2.6931 44 1 6.1807 -4.5411 1.0484 45 1 5.5237 -4.8628 -0.5854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758576749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:19 Heat of formation + Delta-G solvation = -119.313536 kcal Electronic energy + Delta-G solvation = -26657.802471 eV Core-core repulsion = 22608.015682 eV Total energy + Delta-G solvation = -4049.786789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64596 -40.87771 -39.99290 -38.31878 -36.46093 -35.32425 -34.56957 -32.77220 -31.62411 -30.68038 -29.28192 -28.40219 -27.63090 -26.67408 -24.44700 -22.64921 -21.68750 -21.05570 -19.83663 -19.72615 -18.73443 -18.10015 -17.71117 -17.35112 -17.08843 -16.95387 -16.86356 -16.36593 -16.35291 -15.88767 -15.70748 -15.10728 -14.78974 -14.57920 -14.42519 -14.35722 -14.19227 -13.75605 -13.70177 -13.57897 -13.37682 -13.32156 -13.15749 -12.93962 -12.88227 -12.86574 -12.82914 -12.65532 -12.53730 -11.84394 -11.73173 -11.15058 -11.11787 -10.98203 -10.57434 -10.26657 -10.15861 -9.70265 -9.65841 -8.64629 -8.33469 -6.11052 1.25099 1.43868 1.44669 1.52981 1.55598 1.60115 1.65857 1.66766 2.15353 2.28610 2.43376 3.00769 3.23245 3.33258 3.44211 3.57417 3.80088 3.95211 3.99912 4.22027 4.22405 4.24556 4.32019 4.33128 4.42209 4.45423 4.53978 4.54286 4.62024 4.77794 4.81827 4.83004 4.92096 5.00857 5.03887 5.12762 5.18500 5.43087 5.46503 5.52579 6.20767 6.31186 6.42609 6.49132 7.08120 7.08730 7.22386 7.26626 8.75305 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.043895 B = 0.001575 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.734113 B =17776.424006 C =18104.060349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.624 5.624 3 C 0.065 3.935 4 C 0.499 3.501 5 O -0.561 6.561 6 C -0.146 4.146 7 C 0.521 3.479 8 O -0.557 6.557 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.140 4.140 12 C 0.135 3.865 13 H 0.081 0.919 14 N -0.705 5.705 15 C 0.541 3.459 16 O -0.559 6.559 17 C -0.131 4.131 18 S -0.148 6.148 19 C -0.549 4.549 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.109 3.891 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.418 0.582 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.657 21.915 10.296 33.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.359 5.359 3 C -0.077 4.077 4 C 0.286 3.714 5 O -0.438 6.438 6 C -0.188 4.188 7 C 0.310 3.690 8 O -0.434 6.434 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.179 4.179 12 C 0.029 3.971 13 H 0.099 0.901 14 N -0.359 5.359 15 C 0.327 3.673 16 O -0.437 6.437 17 C -0.283 4.283 18 S 0.079 5.921 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.015 4.015 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.972 22.019 8.535 33.650 hybrid contribution 0.297 -2.031 1.421 2.496 sum -23.674 19.989 9.956 32.544 Atomic orbital electron populations 1.21668 0.79026 1.03205 1.02111 1.47932 1.07584 1.06869 1.73511 1.22217 0.98302 0.83489 1.03648 1.20709 0.90644 0.83474 0.76560 1.90854 1.70756 1.32689 1.49480 1.21664 0.92376 0.94670 1.10100 1.20382 0.80322 0.92026 0.76272 1.90869 1.54998 1.47740 1.49750 1.48434 1.05065 1.08237 1.73686 1.22331 0.84016 0.90662 1.04887 1.23049 0.97361 0.94465 1.03059 1.22022 0.87377 0.88393 0.99356 0.90056 1.45562 1.19489 1.39202 1.31642 1.19983 0.81851 0.82988 0.82515 1.90695 1.75720 1.49832 1.27411 1.23381 0.98936 1.01164 1.04772 1.85529 1.17911 1.49612 1.39002 1.23187 1.08127 1.22373 1.15962 0.89940 1.26088 0.97824 0.99660 0.95389 1.70168 1.20617 1.42273 1.21629 0.85037 0.77064 0.77688 0.78414 1.18881 1.20428 1.18587 1.22243 0.91511 0.85976 1.01803 0.92520 0.88240 0.93297 0.87942 0.90461 0.90407 0.82323 0.81869 0.88679 0.87372 0.89889 0.88914 0.74469 0.86889 0.87412 0.92005 0.89303 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.48 127.77 1.34 2.24 16 2 N -0.62 -6.86 3.27 -871.87 -2.85 -9.72 16 3 C 0.06 0.03 10.60 127.77 1.35 1.39 16 4 C 0.50 9.28 7.67 87.66 0.67 9.95 16 5 O -0.56 -17.95 13.76 20.40 0.28 -17.67 16 6 C -0.15 -1.44 3.69 29.10 0.11 -1.33 16 7 C 0.52 10.70 7.84 87.66 0.69 11.39 16 8 O -0.56 -18.69 14.43 20.42 0.29 -18.40 16 9 N -0.62 -9.74 3.32 -811.36 -2.70 -12.44 16 10 C 0.10 0.83 6.48 86.73 0.56 1.39 16 11 C -0.14 -1.98 6.64 31.78 0.21 -1.77 16 12 C 0.13 2.68 3.33 46.46 0.15 2.84 16 13 H 0.08 2.05 7.73 -2.39 -0.02 2.04 16 14 N -0.70 -15.91 5.23 -435.60 -2.28 -18.19 16 15 C 0.54 18.47 7.85 87.66 0.69 19.15 16 16 O -0.56 -24.16 15.61 -3.02 -0.05 -24.20 16 17 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 18 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 19 C -0.55 -30.86 9.50 67.95 0.65 -30.22 16 20 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 21 C 0.02 0.86 5.49 84.86 0.47 1.33 16 22 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 23 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 27 C 0.11 1.98 6.53 86.93 0.57 2.55 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.45 8.07 -2.39 -0.02 0.43 16 30 H 0.05 0.82 7.42 -2.38 -0.02 0.81 16 31 H 0.10 -0.42 5.77 -2.38 -0.01 -0.43 16 32 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.16 0.39 7.79 -2.38 -0.02 0.37 16 35 H 0.16 0.21 7.79 -2.39 -0.02 0.19 16 36 H 0.09 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.42 6.72 8.52 -92.71 -0.79 5.93 16 41 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 42 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.09 1.37 8.00 -2.39 -0.02 1.35 16 45 H 0.07 1.50 8.03 -2.39 -0.02 1.48 16 Total: -1.00 -96.65 391.07 1.96 -94.68 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.22 Total: 10.56 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 7.89 Total: 14.40 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -7.54 Total: -95.36 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: 0.53 Total: -60.27 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -96.65 1.96 -94.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758576749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.629 kcal (2) G-P(sol) polarization free energy of solvation -96.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds