Wall clock time and date at job start Wed Apr 1 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99393 * 2 1 4 4 C 1.52993 * 109.47303 * 269.99334 * 3 2 1 5 5 N 1.46504 * 109.47303 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99786 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00120 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99796 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.40601 * 59.82374 * 8 6 5 10 10 C 1.53069 * 109.40001 * 179.57300 * 8 6 5 11 11 C 1.53367 * 108.41202 * 169.03571 * 10 8 6 12 12 C 1.52918 * 108.66253 * 292.44234 * 11 10 8 13 13 N 1.45757 * 110.48892 * 50.76699 * 12 11 10 14 14 C 1.33356 * 124.10124 * 340.94187 * 13 12 11 15 15 O 1.21279 * 118.24260 * 182.20373 * 14 13 12 16 16 C 1.34771 * 120.00690 * 179.97438 * 2 1 3 17 17 O 1.21281 * 120.00398 * 180.02562 * 16 2 1 18 18 C 1.50702 * 119.99698 * 0.02562 * 16 2 1 19 19 S 1.81002 * 109.47279 * 179.97438 * 18 16 2 20 20 C 1.76203 * 99.99786 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00453 * 359.72125 * 20 19 18 22 22 C 1.38805 * 119.99580 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00030 * 359.71792 * 22 20 19 24 24 Si 1.86798 * 119.99665 * 179.72429 * 22 20 19 25 25 H 1.48490 * 109.47339 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 119.99872 * 24 22 20 27 27 H 1.48504 * 109.46636 * 239.99431 * 24 22 20 28 28 H 1.08997 * 109.47121 * 269.99938 * 1 2 3 29 29 H 1.08991 * 109.47586 * 30.00003 * 1 2 3 30 30 H 1.09000 * 109.46785 * 150.00023 * 1 2 3 31 31 H 1.08994 * 109.47562 * 30.00172 * 3 2 1 32 32 H 1.09002 * 109.46916 * 149.99837 * 3 2 1 33 33 H 1.08994 * 109.47496 * 300.00879 * 4 3 2 34 34 H 1.09002 * 109.46723 * 60.00385 * 4 3 2 35 35 H 0.96991 * 119.99988 * 0.02562 * 5 4 3 36 36 H 1.08999 * 109.67380 * 288.75498 * 10 8 6 37 37 H 1.08992 * 109.67732 * 49.29576 * 10 8 6 38 38 H 1.08999 * 109.59913 * 172.69616 * 11 10 8 39 39 H 1.09002 * 109.75438 * 52.28146 * 11 10 8 40 40 H 1.08996 * 109.30499 * 290.45404 * 12 11 10 41 41 H 1.09008 * 109.13293 * 170.96708 * 12 11 10 42 42 H 0.96995 * 117.95256 * 160.92655 * 13 12 11 43 43 H 1.09002 * 109.47315 * 59.99436 * 18 16 2 44 44 H 1.09004 * 109.46949 * 300.00089 * 18 16 2 45 45 H 0.97000 * 119.99668 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 7 3.1854 2.9790 -1.4424 6 6 3.5220 3.5628 -2.6097 7 8 3.2178 3.0382 -3.6600 8 6 4.2764 4.8673 -2.6097 9 1 5.2274 4.7357 -2.0935 10 6 4.5394 5.3025 -4.0534 11 6 5.0548 6.7469 -4.0377 12 6 3.9232 7.6653 -3.5744 13 7 3.3351 7.1663 -2.3376 14 6 3.4645 5.9130 -1.9006 15 8 2.8959 5.6009 -0.8759 16 6 2.1390 -1.1671 0.0005 17 8 3.3518 -1.1670 0.0010 18 6 1.3855 -2.4722 0.0005 19 16 2.5618 -3.8480 0.0005 20 6 1.4417 -5.2081 -0.0003 21 1 0.3765 -5.0305 0.0040 22 6 1.9286 -6.5080 0.0001 23 7 3.2270 -6.7245 -0.0047 24 14 0.7411 -7.9500 0.0070 25 1 -0.6542 -7.4422 0.0121 26 1 0.9622 -8.7791 -1.2049 27 1 0.9717 -8.7751 1.2200 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1386 0.5139 33 1 3.0415 0.9509 -1.9562 34 1 1.5000 1.8407 -1.9563 35 1 3.4283 3.3987 -0.6025 36 1 5.2885 4.6506 -4.5026 37 1 3.6142 5.2491 -4.6271 38 1 5.3708 7.0333 -5.0408 39 1 5.8974 6.8299 -3.3512 40 1 3.1552 7.7085 -4.3466 41 1 4.3215 8.6659 -3.4058 42 1 2.8174 7.7844 -1.7986 43 1 0.7591 -2.5302 -0.8896 44 1 0.7585 -2.5298 0.8903 45 1 3.5671 -7.6329 -0.0048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758944246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:57 Heat of formation + Delta-G solvation = -140.796317 kcal Electronic energy + Delta-G solvation = -27044.000045 eV Core-core repulsion = 22993.281692 eV Total energy + Delta-G solvation = -4050.718353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02056 -40.95508 -40.04055 -37.65251 -37.12674 -35.64017 -34.59192 -34.15710 -32.04643 -30.95953 -29.51671 -27.71114 -27.49538 -25.97057 -24.07823 -23.74825 -22.05536 -20.75994 -20.11502 -19.55865 -18.70659 -18.24444 -18.04434 -17.63000 -17.47822 -16.90576 -16.83940 -16.55024 -16.16808 -15.97656 -15.73096 -15.24726 -15.21008 -14.94195 -14.59030 -14.41231 -14.35167 -14.28029 -14.18922 -13.59131 -13.27947 -13.17119 -13.08728 -13.01748 -12.91114 -12.64382 -12.45263 -12.40707 -12.25890 -11.96335 -11.70952 -11.24653 -11.16434 -10.96424 -10.85912 -10.27623 -10.22540 -10.08707 -9.82820 -8.68387 -8.35463 -6.13872 1.18584 1.24378 1.41099 1.42406 1.49249 1.53283 1.56678 1.87739 2.25537 2.27340 2.41536 2.98760 3.24725 3.39585 3.46513 3.65276 3.70578 3.80024 3.84586 3.98174 4.15381 4.19299 4.22126 4.29787 4.32324 4.46704 4.49313 4.65303 4.68334 4.74631 4.82954 4.84544 4.92402 5.04832 5.07389 5.22245 5.32468 5.41496 5.48679 5.75810 6.17863 6.18843 6.20164 6.38360 7.02909 7.05756 7.07394 7.11016 8.74132 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.028671 B = 0.001796 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.363126 B =15588.711921 C =16029.083693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.609 5.609 3 C 0.114 3.886 4 C 0.113 3.887 5 N -0.703 5.703 6 C 0.521 3.479 7 O -0.575 6.575 8 C -0.122 4.122 9 H 0.153 0.847 10 C -0.106 4.106 11 C -0.132 4.132 12 C 0.100 3.900 13 N -0.704 5.704 14 C 0.528 3.472 15 O -0.581 6.581 16 C 0.530 3.470 17 O -0.561 6.561 18 C -0.124 4.124 19 S -0.154 6.154 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.418 0.582 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.410 0.590 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 34.723 -5.542 35.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C -0.010 4.010 4 C -0.013 4.013 5 N -0.355 5.355 6 C 0.307 3.693 7 O -0.455 6.455 8 C -0.145 4.145 9 H 0.171 0.829 10 C -0.144 4.144 11 C -0.169 4.169 12 C -0.023 4.023 13 N -0.354 5.354 14 C 0.313 3.687 15 O -0.462 6.462 16 C 0.318 3.682 17 O -0.439 6.439 18 C -0.275 4.275 19 S 0.073 5.927 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.256 0.744 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.247 0.753 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.834 33.953 -5.887 34.469 hybrid contribution -1.727 -0.892 0.486 2.003 sum -2.561 33.061 -5.400 33.597 Atomic orbital electron populations 1.22151 0.76476 1.04770 1.03808 1.47724 1.08662 1.04249 1.73666 1.21541 0.99008 0.85397 0.95022 1.21535 0.96445 0.85029 0.98278 1.45828 1.57073 1.23033 1.09615 1.20496 0.79092 0.86406 0.83304 1.90717 1.56038 1.66176 1.32543 1.21512 1.00937 0.90429 1.01664 0.82927 1.21551 1.02960 0.98286 0.91604 1.21957 0.97998 0.92016 1.04936 1.21758 0.96382 0.99165 0.84969 1.45384 1.53782 1.10446 1.25821 1.19583 0.80751 0.83915 0.84415 1.90738 1.48818 1.80024 1.26595 1.20228 0.87345 0.85545 0.75089 1.90683 1.15603 1.87441 1.50134 1.23380 1.02737 0.94800 1.06547 1.85592 1.12702 0.97350 1.97033 1.23233 0.94643 0.92590 1.58800 0.89831 1.26153 0.97631 1.01729 0.93723 1.70197 1.14127 1.22427 1.48056 0.84884 0.78171 0.76680 0.78075 1.17947 1.19981 1.19852 0.90330 0.88513 0.90500 0.86240 0.90472 0.94279 0.91272 0.74421 0.89915 0.91638 0.86962 0.89592 0.90556 0.87107 0.75334 0.87419 0.87111 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.24 127.77 1.31 2.60 16 2 N -0.61 -16.79 2.87 -846.80 -2.43 -19.23 16 3 C 0.11 2.72 5.52 86.38 0.48 3.19 16 4 C 0.11 3.00 6.00 86.38 0.52 3.52 16 5 N -0.70 -16.49 5.04 -463.07 -2.33 -18.83 16 6 C 0.52 12.87 7.06 87.66 0.62 13.49 16 7 O -0.58 -18.67 15.79 -3.04 -0.05 -18.72 16 8 C -0.12 -1.86 2.78 -12.43 -0.03 -1.90 16 9 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 10 C -0.11 -1.24 4.78 30.74 0.15 -1.09 16 11 C -0.13 -0.44 6.02 30.69 0.18 -0.25 16 12 C 0.10 0.24 7.17 86.49 0.62 0.86 16 13 N -0.70 -5.93 5.45 -467.30 -2.55 -8.47 16 14 C 0.53 8.19 7.28 87.71 0.64 8.83 16 15 O -0.58 -12.68 15.56 -3.03 -0.05 -12.72 16 16 C 0.53 20.65 7.69 87.66 0.67 21.32 16 17 O -0.56 -26.89 15.44 -3.03 -0.05 -26.93 16 18 C -0.12 -5.08 4.71 71.24 0.34 -4.75 16 19 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 20 C -0.54 -31.60 9.50 67.96 0.65 -30.95 16 21 H 0.08 4.49 7.80 -2.92 -0.02 4.47 16 22 C 0.01 0.71 5.49 84.86 0.47 1.17 16 23 N -0.91 -56.79 13.22 21.65 0.29 -56.51 16 24 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 30 H 0.08 1.47 6.44 -2.39 -0.02 1.46 16 31 H 0.12 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.08 2.11 7.42 -2.39 -0.02 2.09 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.42 8.35 7.14 -92.72 -0.66 7.69 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.01 7.72 -2.39 -0.02 1.00 16 38 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.09 0.17 8.13 -2.39 -0.02 0.15 16 40 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.11 -0.31 8.14 -2.38 -0.02 -0.33 16 42 H 0.41 2.64 8.80 -92.71 -0.82 1.82 16 43 H 0.11 4.04 7.40 -2.39 -0.02 4.02 16 44 H 0.11 4.08 8.11 -2.39 -0.02 4.06 16 45 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -89.23 387.61 -0.16 -89.38 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.45 Total: 19.69 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.60 Total: 16.05 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -7.03 Total: -103.03 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -0.14 Total: -58.38 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -89.23 -0.16 -89.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758944246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.413 kcal (2) G-P(sol) polarization free energy of solvation -89.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds