Wall clock time and date at job start Wed Apr 1 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99781 * 2 1 4 4 O 1.21280 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99954 * 179.72531 * 3 2 1 6 6 C 1.50700 * 109.47221 * 179.97438 * 5 3 2 7 7 O 1.21284 * 119.99554 * 0.02562 * 6 5 3 8 8 N 1.34778 * 120.00154 * 179.97438 * 6 5 3 9 9 C 1.47422 * 125.64832 * 354.64359 * 8 6 5 10 10 C 1.54688 * 104.93913 * 204.06914 * 9 8 6 11 11 C 1.55151 * 101.67643 * 323.27418 * 10 9 8 12 12 C 1.47021 * 125.64595 * 174.93938 * 8 6 5 13 13 H 1.09002 * 109.88060 * 59.49472 * 12 8 6 14 14 C 1.52999 * 109.88671 * 298.32830 * 12 8 6 15 15 N 1.46502 * 109.46996 * 175.32767 * 14 12 8 16 16 C 1.34773 * 119.99480 * 184.90049 * 15 14 12 17 17 O 1.21276 * 120.00636 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99744 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47245 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99898 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99723 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00429 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00038 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46859 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47266 * 119.99864 * 24 22 20 27 27 H 1.48492 * 109.47178 * 240.00026 * 24 22 20 28 28 H 1.09003 * 109.46845 * 299.99880 * 1 2 3 29 29 H 1.08995 * 109.47197 * 60.00113 * 1 2 3 30 30 H 1.09004 * 109.46793 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00359 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47384 * 299.99803 * 5 3 2 33 33 H 1.09009 * 109.46884 * 59.99807 * 5 3 2 34 34 H 1.09005 * 110.36433 * 322.99775 * 9 8 6 35 35 H 1.08994 * 110.37301 * 85.31942 * 9 8 6 36 36 H 1.09005 * 111.10418 * 205.10118 * 10 9 8 37 37 H 1.09005 * 110.81713 * 81.31880 * 10 9 8 38 38 H 1.09005 * 110.72209 * 276.97212 * 11 10 9 39 39 H 1.09007 * 110.87130 * 153.77535 * 11 10 9 40 40 H 1.08996 * 109.46726 * 295.32687 * 14 12 8 41 41 H 1.08999 * 109.46939 * 55.32448 * 14 12 8 42 42 H 0.96997 * 120.00163 * 4.90212 * 15 14 12 43 43 H 1.09003 * 109.46762 * 300.00307 * 18 16 15 44 44 H 1.08997 * 109.47598 * 59.99762 * 18 16 15 45 45 H 0.96998 * 120.00422 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 0.0063 6 6 4.1481 2.5881 0.0043 7 8 3.3599 3.5099 -0.0011 8 7 5.4732 2.8345 0.0096 9 6 6.5354 1.8192 0.1294 10 6 7.7554 2.5833 0.6956 11 6 7.6259 3.9547 -0.0184 12 6 6.0985 4.1608 -0.0969 13 1 5.7672 4.7940 0.7261 14 6 5.7284 4.8048 -1.4344 15 7 6.2627 6.1680 -1.4845 16 6 5.9755 6.9662 -2.5318 17 8 5.2745 6.5562 -3.4325 18 6 6.5256 8.3683 -2.5836 19 16 5.9658 9.1803 -4.1013 20 6 6.7321 10.7550 -3.9063 21 1 7.3321 10.9589 -3.0317 22 6 6.5646 11.7331 -4.8766 23 7 5.8338 11.4844 -5.9428 24 14 7.3776 13.4023 -4.6703 25 1 8.1394 13.4276 -3.3958 26 1 8.3032 13.6458 -5.8057 27 1 6.3361 14.4604 -4.6451 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 4.0055 0.6556 0.8990 33 1 4.0128 0.6513 -0.8810 34 1 6.2297 1.0296 0.8159 35 1 6.7730 1.4014 -0.8489 36 1 8.6883 2.0886 0.4253 37 1 7.6740 2.6964 1.7767 38 1 8.0612 3.9123 -1.0169 39 1 8.0920 4.7447 0.5706 40 1 6.1521 4.2183 -2.2496 41 1 4.6435 4.8358 -1.5348 42 1 6.8231 6.4960 -0.7640 43 1 6.1709 8.9298 -1.7193 44 1 7.6149 8.3320 -2.5711 45 1 5.7165 12.1681 -6.6208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759031840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:38 Heat of formation + Delta-G solvation = -100.384978 kcal Electronic energy + Delta-G solvation = -27087.222497 eV Core-core repulsion = 23038.256511 eV Total energy + Delta-G solvation = -4048.965985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87222 -39.71466 -38.83691 -37.52039 -34.83280 -34.53357 -32.40774 -32.37890 -31.12910 -30.38715 -28.68020 -26.78940 -25.59534 -25.18335 -23.19517 -21.82611 -20.80804 -20.37262 -19.27793 -17.92034 -17.75992 -17.14675 -17.05937 -16.26248 -16.11242 -15.90678 -15.38218 -15.16678 -14.87721 -14.76452 -14.55115 -14.09643 -13.91096 -13.80047 -13.49510 -13.43510 -13.10912 -12.98884 -12.90658 -12.62600 -12.51986 -12.41560 -12.14418 -11.77661 -11.74981 -11.18075 -11.12880 -11.03342 -10.97225 -10.72016 -10.41179 -9.76569 -9.67285 -9.46628 -9.34463 -9.03429 -8.95806 -8.79533 -8.16856 -6.44385 -6.17124 -3.87192 2.26091 2.32135 2.48831 2.94543 3.17176 3.19656 3.24833 3.32344 3.39182 3.82344 3.92523 4.08949 4.23394 4.24597 4.41480 4.48648 4.63634 4.73182 4.76337 4.86937 4.91216 4.99670 5.12607 5.16497 5.17832 5.22508 5.36152 5.38041 5.46101 5.47203 5.65197 5.72338 5.77528 5.90661 5.96699 6.01409 6.15986 6.19769 6.67097 7.05384 7.18465 7.64197 7.77299 7.87979 8.04400 8.39937 8.70546 9.28032 10.90362 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002035 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.647534 B =13753.870795 C =15141.332537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.507 3.493 4 O -0.487 6.487 5 C -0.159 4.159 6 C 0.526 3.474 7 O -0.480 6.480 8 N -0.619 5.619 9 C 0.098 3.902 10 C -0.132 4.132 11 C -0.132 4.132 12 C 0.130 3.870 13 H 0.083 0.917 14 C 0.113 3.887 15 N -0.735 5.735 16 C 0.532 3.468 17 O -0.515 6.515 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.399 0.601 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.396 0.604 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 -30.228 18.123 35.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.291 3.709 4 O -0.358 6.358 5 C -0.202 4.202 6 C 0.312 3.688 7 O -0.351 6.351 8 N -0.357 5.357 9 C -0.025 4.025 10 C -0.170 4.170 11 C -0.170 4.170 12 C 0.026 3.974 13 H 0.101 0.899 14 C -0.013 4.013 15 N -0.390 5.390 16 C 0.318 3.682 17 O -0.389 6.389 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.186 -29.551 16.431 33.813 hybrid contribution 1.906 1.052 1.491 2.639 sum 2.091 -28.499 17.922 33.731 Atomic orbital electron populations 1.21520 0.79316 1.02096 1.02589 1.45764 1.07847 1.08349 1.77625 1.20032 0.89164 0.84122 0.77607 1.90916 1.69311 1.30361 1.45176 1.21559 0.94863 0.97281 1.06502 1.19638 0.80654 0.90816 0.77726 1.90933 1.53242 1.45338 1.45574 1.48468 1.04840 1.07825 1.74556 1.22331 0.87548 0.91516 1.01120 1.22729 0.97796 0.95778 1.00688 1.22799 0.93768 0.98012 1.02388 1.21701 0.92812 0.84944 0.97896 0.89857 1.21561 1.00946 0.82869 0.95883 1.45825 1.54709 1.13848 1.24638 1.20291 0.80044 0.86699 0.81180 1.90711 1.36396 1.75015 1.36769 1.23520 1.03997 0.95070 1.07669 1.85441 1.67214 1.11392 1.19356 1.22915 1.36473 0.98886 1.09965 0.90872 1.25002 0.95229 0.98960 0.94501 1.70034 1.36930 1.34333 1.08989 0.86109 0.78964 0.82151 0.78215 1.19631 1.20601 1.20591 0.92227 0.92094 0.90676 0.76749 0.86237 0.86013 0.90468 0.91003 0.89483 0.90441 0.89740 0.89520 0.91824 0.90157 0.76992 0.89197 0.89224 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.70 59.85 0.64 1.17 16 2 N -0.74 -4.45 5.71 -67.08 -0.38 -4.83 16 3 C 0.51 5.11 7.82 -10.98 -0.09 5.03 16 4 O -0.49 -7.99 14.18 -18.96 -0.27 -8.25 16 5 C -0.16 -1.04 5.28 -29.03 -0.15 -1.19 16 6 C 0.53 6.02 7.56 -10.98 -0.08 5.93 16 7 O -0.48 -8.40 13.36 -18.96 -0.25 -8.65 16 8 N -0.62 -5.43 3.07 -163.16 -0.50 -5.93 16 9 C 0.10 0.43 6.64 -2.65 -0.02 0.41 16 10 C -0.13 -0.52 7.07 -24.70 -0.17 -0.69 16 11 C -0.13 -0.82 6.08 -24.90 -0.15 -0.97 16 12 C 0.13 1.27 2.93 -66.95 -0.20 1.07 16 13 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.11 1.56 5.07 -4.04 -0.02 1.54 16 15 N -0.73 -10.73 5.41 -60.30 -0.33 -11.06 16 16 C 0.53 10.71 7.85 -10.99 -0.09 10.62 16 17 O -0.52 -12.73 15.86 5.56 0.09 -12.64 16 18 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.60 9.50 30.94 0.29 -15.30 16 21 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.78 13.22 55.49 0.73 -26.04 16 24 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.40 0.80 8.83 -40.82 -0.36 0.44 16 32 H 0.12 0.33 7.76 -51.93 -0.40 -0.07 16 33 H 0.12 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.08 0.16 7.51 -51.93 -0.39 -0.23 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.57 7.77 -51.93 -0.40 0.17 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.89 8.03 -51.93 -0.42 0.48 16 41 H 0.08 1.45 6.89 -51.93 -0.36 1.09 16 42 H 0.40 4.37 8.25 -40.82 -0.34 4.03 16 43 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -43.80 391.13 -9.02 -52.82 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.86 Total: -0.87 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 0.09 Total: 6.64 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.48 Total: -47.86 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.43 Total: -29.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -43.80 -9.02 -52.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759031840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.564 kcal (2) G-P(sol) polarization free energy of solvation -43.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds