Wall clock time and date at job start Wed Apr 1 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99781 * 2 1 4 4 O 1.21280 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99954 * 179.72531 * 3 2 1 6 6 C 1.50700 * 109.47221 * 179.97438 * 5 3 2 7 7 O 1.21284 * 119.99554 * 0.02562 * 6 5 3 8 8 N 1.34778 * 120.00154 * 179.97438 * 6 5 3 9 9 C 1.47422 * 125.64832 * 354.64359 * 8 6 5 10 10 C 1.54688 * 104.93913 * 204.06914 * 9 8 6 11 11 C 1.55151 * 101.67643 * 323.27418 * 10 9 8 12 12 C 1.47021 * 125.64595 * 174.93938 * 8 6 5 13 13 H 1.09002 * 109.88060 * 59.49472 * 12 8 6 14 14 C 1.52999 * 109.88671 * 298.32830 * 12 8 6 15 15 N 1.46502 * 109.46996 * 175.32767 * 14 12 8 16 16 C 1.34773 * 119.99480 * 184.90049 * 15 14 12 17 17 O 1.21276 * 120.00636 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99744 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47245 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99898 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99723 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00429 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00038 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46859 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47266 * 119.99864 * 24 22 20 27 27 H 1.48492 * 109.47178 * 240.00026 * 24 22 20 28 28 H 1.09003 * 109.46845 * 299.99880 * 1 2 3 29 29 H 1.08995 * 109.47197 * 60.00113 * 1 2 3 30 30 H 1.09004 * 109.46793 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00359 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47384 * 299.99803 * 5 3 2 33 33 H 1.09009 * 109.46884 * 59.99807 * 5 3 2 34 34 H 1.09005 * 110.36433 * 322.99775 * 9 8 6 35 35 H 1.08994 * 110.37301 * 85.31942 * 9 8 6 36 36 H 1.09005 * 111.10418 * 205.10118 * 10 9 8 37 37 H 1.09005 * 110.81713 * 81.31880 * 10 9 8 38 38 H 1.09005 * 110.72209 * 276.97212 * 11 10 9 39 39 H 1.09007 * 110.87130 * 153.77535 * 11 10 9 40 40 H 1.08996 * 109.46726 * 295.32687 * 14 12 8 41 41 H 1.08999 * 109.46939 * 55.32448 * 14 12 8 42 42 H 0.96997 * 120.00163 * 4.90212 * 15 14 12 43 43 H 1.09003 * 109.46762 * 300.00307 * 18 16 15 44 44 H 1.08997 * 109.47598 * 59.99762 * 18 16 15 45 45 H 0.96998 * 120.00422 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 0.0063 6 6 4.1481 2.5881 0.0043 7 8 3.3599 3.5099 -0.0011 8 7 5.4732 2.8345 0.0096 9 6 6.5354 1.8192 0.1294 10 6 7.7554 2.5833 0.6956 11 6 7.6259 3.9547 -0.0184 12 6 6.0985 4.1608 -0.0969 13 1 5.7672 4.7940 0.7261 14 6 5.7284 4.8048 -1.4344 15 7 6.2627 6.1680 -1.4845 16 6 5.9755 6.9662 -2.5318 17 8 5.2745 6.5562 -3.4325 18 6 6.5256 8.3683 -2.5836 19 16 5.9658 9.1803 -4.1013 20 6 6.7321 10.7550 -3.9063 21 1 7.3321 10.9589 -3.0317 22 6 6.5646 11.7331 -4.8766 23 7 5.8338 11.4844 -5.9428 24 14 7.3776 13.4023 -4.6703 25 1 8.1394 13.4276 -3.3958 26 1 8.3032 13.6458 -5.8057 27 1 6.3361 14.4604 -4.6451 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 4.0055 0.6556 0.8990 33 1 4.0128 0.6513 -0.8810 34 1 6.2297 1.0296 0.8159 35 1 6.7730 1.4014 -0.8489 36 1 8.6883 2.0886 0.4253 37 1 7.6740 2.6964 1.7767 38 1 8.0612 3.9123 -1.0169 39 1 8.0920 4.7447 0.5706 40 1 6.1521 4.2183 -2.2496 41 1 4.6435 4.8358 -1.5348 42 1 6.8231 6.4960 -0.7640 43 1 6.1709 8.9298 -1.7193 44 1 7.6149 8.3320 -2.5711 45 1 5.7165 12.1681 -6.6208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759031840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:38 Heat of formation + Delta-G solvation = -136.529512 kcal Electronic energy + Delta-G solvation = -27088.789842 eV Core-core repulsion = 23038.256511 eV Total energy + Delta-G solvation = -4050.533330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65865 -40.76142 -40.09527 -38.36649 -35.87791 -35.54446 -34.59827 -33.15625 -32.03076 -31.32667 -29.89251 -27.70777 -27.34661 -26.20801 -23.94031 -22.42865 -21.81401 -21.49358 -20.22919 -19.69189 -18.59699 -17.98738 -17.86530 -17.66494 -16.94505 -16.90636 -16.88276 -16.59416 -16.34371 -15.70842 -15.65211 -15.34604 -14.99491 -14.78899 -14.53718 -14.47282 -14.06261 -13.99299 -13.86058 -13.68931 -13.43635 -13.17750 -13.10023 -13.06262 -12.91977 -12.80132 -12.60629 -12.09197 -11.94396 -11.72682 -11.60602 -11.23583 -11.17120 -11.06913 -10.56981 -10.29266 -10.21880 -10.11215 -9.70390 -8.69701 -8.35764 -6.14899 1.22335 1.41134 1.42395 1.53496 1.55461 1.59284 1.67949 1.72193 2.23701 2.26419 2.53329 2.98275 3.30033 3.32952 3.57123 3.63545 3.82075 3.94806 4.00176 4.09835 4.23616 4.26886 4.34995 4.36493 4.43346 4.46622 4.49287 4.60644 4.67410 4.74308 4.85659 4.95186 4.98761 5.03046 5.16649 5.25343 5.39414 5.40870 5.42704 5.45875 6.19042 6.42594 6.47067 6.61064 7.05033 7.16170 7.19499 7.38614 8.73966 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002035 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.647534 B =13753.870795 C =15141.332537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.720 5.720 3 C 0.496 3.504 4 O -0.564 6.564 5 C -0.144 4.144 6 C 0.511 3.489 7 O -0.556 6.556 8 N -0.616 5.616 9 C 0.089 3.911 10 C -0.122 4.122 11 C -0.127 4.127 12 C 0.132 3.868 13 H 0.071 0.929 14 C 0.119 3.881 15 N -0.706 5.706 16 C 0.532 3.468 17 O -0.570 6.570 18 C -0.125 4.125 19 S -0.158 6.158 20 C -0.544 4.544 21 H 0.085 0.915 22 C 0.010 3.990 23 N -0.913 5.913 24 Si 1.003 2.997 25 H -0.255 1.255 26 H -0.272 1.272 27 H -0.275 1.275 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.117 0.883 31 H 0.423 0.577 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.418 0.582 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -32.560 20.601 38.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.375 5.375 3 C 0.282 3.718 4 O -0.441 6.441 5 C -0.186 4.186 6 C 0.300 3.700 7 O -0.433 6.433 8 N -0.352 5.352 9 C -0.032 4.032 10 C -0.160 4.160 11 C -0.165 4.165 12 C 0.027 3.973 13 H 0.089 0.911 14 C -0.006 4.006 15 N -0.361 5.361 16 C 0.317 3.683 17 O -0.448 6.448 18 C -0.277 4.277 19 S 0.069 5.931 20 C -0.692 4.692 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.824 3.176 25 H -0.178 1.178 26 H -0.197 1.197 27 H -0.201 1.201 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.135 0.865 31 H 0.261 0.739 32 H 0.187 0.813 33 H 0.177 0.823 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.256 0.744 43 H 0.127 0.873 44 H 0.137 0.863 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.680 -32.008 18.976 37.392 hybrid contribution 0.832 1.618 0.782 1.980 sum 4.512 -30.390 19.758 36.528 Atomic orbital electron populations 1.21605 0.79414 1.04187 1.00777 1.45635 1.07955 1.08419 1.75506 1.20785 0.90849 0.83896 0.76307 1.90898 1.71001 1.33221 1.48940 1.21625 0.92016 0.94559 1.10424 1.20597 0.80910 0.92176 0.76335 1.90912 1.55395 1.47872 1.49082 1.48623 1.05097 1.08519 1.72933 1.22745 0.86244 0.91173 1.02995 1.22764 0.98570 0.93907 1.00775 1.22811 0.90222 1.00417 1.03051 1.21677 0.95649 0.85566 0.94380 0.91113 1.21555 0.97888 0.82320 0.98846 1.45511 1.53474 1.13666 1.23410 1.20204 0.79528 0.86817 0.81702 1.90697 1.38978 1.75932 1.39187 1.23345 1.05460 0.94953 1.03911 1.85683 1.68873 1.13438 1.25061 1.23240 1.36551 0.98802 1.10587 0.89654 1.26200 0.95675 1.03711 0.93864 1.70205 1.38569 1.36027 1.10136 0.84846 0.77891 0.75850 0.78969 1.17823 1.19728 1.20094 0.93806 0.94335 0.86473 0.73918 0.81335 0.82304 0.86972 0.89627 0.87091 0.89736 0.89993 0.88022 0.91899 0.95022 0.74433 0.87310 0.86342 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.70 127.77 1.37 2.35 16 2 N -0.72 -7.59 5.71 -484.52 -2.77 -10.35 16 3 C 0.50 9.97 7.82 87.66 0.69 10.65 16 4 O -0.56 -20.10 14.18 20.41 0.29 -19.81 16 5 C -0.14 -1.54 5.28 29.10 0.15 -1.39 16 6 C 0.51 11.70 7.56 87.66 0.66 12.37 16 7 O -0.56 -21.14 13.36 20.40 0.27 -20.87 16 8 N -0.62 -9.86 3.07 -788.50 -2.42 -12.27 16 9 C 0.09 0.39 6.64 86.78 0.58 0.97 16 10 C -0.12 -0.41 7.07 31.91 0.23 -0.18 16 11 C -0.13 -1.19 6.08 31.78 0.19 -1.00 16 12 C 0.13 2.46 2.93 45.34 0.13 2.60 16 13 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 14 C 0.12 3.43 5.07 86.38 0.44 3.87 16 15 N -0.71 -20.60 5.41 -463.07 -2.50 -23.10 16 16 C 0.53 21.89 7.85 87.66 0.69 22.58 16 17 O -0.57 -29.73 15.86 -3.02 -0.05 -29.77 16 18 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 19 S -0.16 -9.20 20.57 -56.49 -1.16 -10.36 16 20 C -0.54 -31.99 9.50 67.95 0.65 -31.35 16 21 H 0.09 4.63 7.80 -2.91 -0.02 4.61 16 22 C 0.01 0.58 5.49 84.86 0.47 1.05 16 23 N -0.91 -57.76 13.22 21.65 0.29 -57.48 16 24 Si 1.00 44.68 29.55 68.60 2.03 46.71 16 25 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.42 0.28 8.83 -92.71 -0.82 -0.54 16 32 H 0.17 0.10 7.76 -2.39 -0.02 0.08 16 33 H 0.16 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.11 -0.22 7.51 -2.38 -0.02 -0.24 16 35 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 37 H 0.08 0.22 8.14 -2.38 -0.02 0.21 16 38 H 0.08 0.86 7.77 -2.38 -0.02 0.84 16 39 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 41 H 0.03 1.25 6.89 -2.39 -0.02 1.23 16 42 H 0.42 8.57 8.25 -92.71 -0.76 7.80 16 43 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 44 H 0.12 4.31 8.14 -2.40 -0.02 4.29 16 45 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -108.14 391.13 0.09 -108.05 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -0.56 Total: 11.60 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.67 Total: 17.66 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -7.40 Total: -103.21 kcal Atomic # 8 Polarization: -70.96 SS G_CDS: 0.51 Total: -70.45 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.16 Total: -10.36 kcal Total: -108.14 0.09 -108.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759031840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.481 kcal (2) G-P(sol) polarization free energy of solvation -108.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds