Wall clock time and date at job start Wed Apr 1 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99983 * 2 1 4 4 C 1.34772 * 119.99837 * 179.97438 * 2 1 3 5 5 O 1.21279 * 120.00205 * 0.02562 * 4 2 1 6 6 C 1.50704 * 120.00045 * 180.27272 * 4 2 1 7 7 C 1.50696 * 109.47152 * 179.72670 * 6 4 2 8 8 O 1.21275 * 120.00057 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99887 * 180.02562 * 7 6 4 10 10 C 1.47068 * 136.05527 * 354.63436 * 9 7 6 11 11 C 1.53242 * 88.08429 * 207.20767 * 10 9 7 12 12 C 1.47069 * 136.06071 * 175.01839 * 9 7 6 13 13 H 1.08993 * 113.46499 * 267.62353 * 12 9 7 14 14 C 1.52997 * 113.46438 * 37.99669 * 12 9 7 15 15 N 1.46508 * 109.47019 * 184.10730 * 14 12 9 16 16 C 1.34773 * 119.99921 * 184.98676 * 15 14 12 17 17 O 1.21281 * 120.00150 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00008 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47487 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00161 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99960 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00169 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99617 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00096 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47227 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47461 * 119.99857 * 24 22 20 27 27 H 1.48511 * 109.46925 * 239.99341 * 24 22 20 28 28 H 1.08999 * 109.47024 * 270.00360 * 1 2 3 29 29 H 1.09005 * 109.47035 * 29.99768 * 1 2 3 30 30 H 1.08995 * 109.47381 * 149.99830 * 1 2 3 31 31 H 1.09003 * 109.46916 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46938 * 299.99585 * 3 2 1 33 33 H 1.08992 * 109.47310 * 59.99825 * 3 2 1 34 34 H 1.09002 * 109.46979 * 299.73058 * 6 4 2 35 35 H 1.09003 * 109.46903 * 59.72765 * 6 4 2 36 36 H 1.08997 * 113.47121 * 321.94418 * 10 9 7 37 37 H 1.09000 * 113.46382 * 92.38492 * 10 9 7 38 38 H 1.08994 * 114.32668 * 220.46863 * 11 10 9 39 39 H 1.09001 * 114.19158 * 87.73157 * 11 10 9 40 40 H 1.08997 * 109.47324 * 304.10768 * 14 12 9 41 41 H 1.09005 * 109.47153 * 64.11305 * 14 12 9 42 42 H 0.97002 * 119.99682 * 4.98190 * 15 14 12 43 43 H 1.09001 * 109.46695 * 299.99892 * 18 16 15 44 44 H 1.09001 * 109.47204 * 59.99474 * 18 16 15 45 45 H 0.97004 * 119.99904 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6458 -1.1672 0.0067 7 6 4.1481 -2.5880 0.0128 8 8 3.3600 -3.5098 0.0127 9 7 5.4732 -2.8343 0.0195 10 6 6.7003 -2.0291 -0.0725 11 6 7.3993 -3.2558 -0.6682 12 6 6.3281 -4.0271 0.1152 13 1 6.6255 -4.2672 1.1360 14 6 5.7727 -5.2369 -0.6389 15 7 6.6370 -6.3967 -0.4058 16 6 6.3998 -7.5548 -1.0530 17 8 5.4706 -7.6371 -1.8280 18 6 7.2884 -8.7479 -0.8127 19 16 6.7160 -10.1391 -1.8193 20 6 7.8982 -11.3601 -1.3542 21 1 8.6717 -11.1185 -0.6403 22 6 7.8359 -12.6321 -1.9061 23 7 6.8934 -12.9264 -2.7766 24 14 9.0896 -13.9263 -1.4136 25 1 10.0372 -13.3476 -0.4276 26 1 8.3904 -15.0872 -0.8064 27 1 9.8383 -14.3730 -2.6159 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 3.2691 1.0695 -0.0005 32 1 1.9342 1.8402 -0.8900 33 1 1.9342 1.8403 0.8899 34 1 4.0128 -0.6559 -0.8832 35 1 4.0055 -0.6509 0.8968 36 1 6.6211 -1.1952 -0.7699 37 1 7.0980 -1.7315 0.8978 38 1 8.4160 -3.4124 -0.3080 39 1 7.3081 -3.3399 -1.7511 40 1 4.7662 -5.4564 -0.2827 41 1 5.7405 -5.0165 -1.7060 42 1 7.3799 -6.3309 0.2144 43 1 8.3135 -8.4984 -1.0866 44 1 7.2506 -9.0228 0.2414 45 1 6.8496 -13.8154 -3.1621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759816738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:12 Heat of formation + Delta-G solvation = -51.332181 kcal Electronic energy + Delta-G solvation = -26727.690180 eV Core-core repulsion = 22680.851284 eV Total energy + Delta-G solvation = -4046.838897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09782 -40.10092 -38.88511 -37.82209 -35.79895 -34.37837 -32.38902 -31.98488 -30.13649 -29.64400 -28.16008 -27.60880 -26.15847 -25.43759 -23.34341 -22.67453 -20.52757 -19.93526 -18.93271 -18.03761 -17.73574 -16.85228 -16.76945 -16.41242 -16.36269 -16.06162 -15.37097 -15.20690 -15.07376 -14.76982 -14.64954 -13.87864 -13.84643 -13.67855 -13.54459 -13.20888 -13.15031 -13.03464 -12.97158 -12.82873 -12.50753 -12.45747 -12.35764 -12.25575 -11.89148 -11.65678 -11.04381 -10.98474 -10.97538 -10.71668 -10.33686 -9.76670 -9.64830 -9.33295 -9.12334 -9.04116 -9.03772 -8.78681 -8.17136 -6.44982 -6.17563 -3.87754 2.11152 2.24387 2.46223 2.69265 3.13726 3.18948 3.24389 3.31756 3.37703 3.81537 3.84922 3.95170 4.05609 4.24085 4.45363 4.46572 4.58654 4.67865 4.71047 4.78424 4.79377 4.85940 4.92724 4.93253 5.06986 5.16126 5.17432 5.23673 5.33563 5.36339 5.45759 5.61179 5.71009 5.83686 5.95719 5.98268 6.12567 6.18500 6.65209 6.86150 7.38171 7.63597 7.76051 7.80470 8.00407 8.39340 8.70057 9.27561 10.89932 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.001750 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.913336 B =15996.540017 C =16892.153795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.629 5.629 3 C 0.075 3.925 4 C 0.509 3.491 5 O -0.486 6.486 6 C -0.155 4.155 7 C 0.537 3.463 8 O -0.480 6.480 9 N -0.648 5.648 10 C 0.099 3.901 11 C -0.151 4.151 12 C 0.127 3.873 13 H 0.099 0.901 14 C 0.116 3.884 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.513 6.513 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 36.111 8.769 37.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.366 5.366 3 C -0.068 4.068 4 C 0.295 3.705 5 O -0.357 6.357 6 C -0.198 4.198 7 C 0.324 3.676 8 O -0.350 6.350 9 N -0.388 5.388 10 C -0.024 4.024 11 C -0.189 4.189 12 C 0.023 3.977 13 H 0.117 0.883 14 C -0.009 4.009 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.387 6.387 18 C -0.302 4.302 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.173 34.785 7.344 35.693 hybrid contribution 2.310 -0.311 1.620 2.839 sum -0.863 34.474 8.964 35.630 Atomic orbital electron populations 1.21605 0.78766 1.03250 1.01935 1.47749 1.07267 1.06065 1.75547 1.21855 0.97248 0.85509 1.02211 1.20040 0.89167 0.83674 0.77661 1.90908 1.69190 1.30004 1.45569 1.21541 0.94867 0.97129 1.06278 1.19543 0.79926 0.90673 0.77417 1.90934 1.52800 1.45380 1.45875 1.49711 1.03455 1.10739 1.74896 1.22922 0.82399 0.96100 1.00958 1.23536 0.98583 0.95198 1.01591 1.22849 0.87591 0.87504 0.99737 0.88321 1.21448 0.95342 0.83827 1.00309 1.45842 1.33910 1.11588 1.47871 1.20298 0.85092 0.83148 0.79776 1.90728 1.30244 1.83014 1.34712 1.23518 1.01825 0.98784 1.06103 1.85465 1.41818 1.01281 1.54838 1.22915 1.16465 0.98305 1.30623 0.90874 1.24999 0.96253 0.97761 0.94646 1.70036 1.31659 1.21278 1.27282 0.86112 0.80391 0.80546 0.78393 1.19637 1.20590 1.20599 0.92743 0.91235 0.90324 0.90387 0.91848 0.91901 0.86237 0.86235 0.90179 0.89515 0.88715 0.88182 0.90060 0.90952 0.76992 0.89203 0.89218 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.48 59.85 0.63 1.20 16 2 N -0.63 -4.46 3.27 -189.52 -0.62 -5.08 16 3 C 0.08 0.19 10.60 59.85 0.63 0.82 16 4 C 0.51 5.39 7.67 -10.99 -0.08 5.31 16 5 O -0.49 -8.03 13.76 -18.96 -0.26 -8.29 16 6 C -0.16 -1.08 4.33 -29.03 -0.13 -1.21 16 7 C 0.54 6.27 7.99 -10.99 -0.09 6.19 16 8 O -0.48 -8.55 13.56 -18.95 -0.26 -8.80 16 9 N -0.65 -5.65 3.57 -177.61 -0.63 -6.28 16 10 C 0.10 0.39 8.41 -8.64 -0.07 0.32 16 11 C -0.15 -0.80 8.01 -26.35 -0.21 -1.01 16 12 C 0.13 1.11 4.09 -72.40 -0.30 0.81 16 13 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 14 C 0.12 1.60 5.39 -4.04 -0.02 1.58 16 15 N -0.74 -10.39 5.55 -60.29 -0.33 -10.73 16 16 C 0.53 10.54 7.85 -10.99 -0.09 10.46 16 17 O -0.51 -12.69 15.86 5.56 0.09 -12.60 16 18 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.52 9.50 30.94 0.29 -15.23 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.69 13.22 55.49 0.73 -25.96 16 24 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 30 H 0.08 0.69 7.42 -51.93 -0.39 0.31 16 31 H 0.08 0.06 5.77 -51.93 -0.30 -0.24 16 32 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 34 H 0.12 0.46 7.79 -51.93 -0.40 0.06 16 35 H 0.12 0.43 7.79 -51.93 -0.40 0.03 16 36 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.64 7.95 -51.93 -0.41 0.23 16 40 H 0.08 1.44 7.05 -51.93 -0.37 1.08 16 41 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 42 H 0.40 4.03 8.48 -40.82 -0.35 3.68 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -43.97 393.79 -8.69 -52.66 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.80 Total: -1.96 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 0.70 Total: 8.31 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.86 Total: -48.04 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.43 Total: -29.69 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -43.97 -8.69 -52.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759816738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.325 kcal (2) G-P(sol) polarization free energy of solvation -43.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds