Wall clock time and date at job start Wed Apr 1 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99983 * 2 1 4 4 C 1.34772 * 119.99837 * 179.97438 * 2 1 3 5 5 O 1.21279 * 120.00205 * 0.02562 * 4 2 1 6 6 C 1.50704 * 120.00045 * 180.27272 * 4 2 1 7 7 C 1.50696 * 109.47152 * 179.72670 * 6 4 2 8 8 O 1.21275 * 120.00057 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99887 * 180.02562 * 7 6 4 10 10 C 1.47068 * 136.05527 * 354.63436 * 9 7 6 11 11 C 1.53242 * 88.08429 * 207.20767 * 10 9 7 12 12 C 1.47069 * 136.06071 * 175.01839 * 9 7 6 13 13 H 1.08993 * 113.46499 * 267.62353 * 12 9 7 14 14 C 1.52997 * 113.46438 * 37.99669 * 12 9 7 15 15 N 1.46508 * 109.47019 * 184.10730 * 14 12 9 16 16 C 1.34773 * 119.99921 * 184.98676 * 15 14 12 17 17 O 1.21281 * 120.00150 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00008 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47487 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00161 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99960 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00169 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99617 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00096 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47227 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47461 * 119.99857 * 24 22 20 27 27 H 1.48511 * 109.46925 * 239.99341 * 24 22 20 28 28 H 1.08999 * 109.47024 * 270.00360 * 1 2 3 29 29 H 1.09005 * 109.47035 * 29.99768 * 1 2 3 30 30 H 1.08995 * 109.47381 * 149.99830 * 1 2 3 31 31 H 1.09003 * 109.46916 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46938 * 299.99585 * 3 2 1 33 33 H 1.08992 * 109.47310 * 59.99825 * 3 2 1 34 34 H 1.09002 * 109.46979 * 299.73058 * 6 4 2 35 35 H 1.09003 * 109.46903 * 59.72765 * 6 4 2 36 36 H 1.08997 * 113.47121 * 321.94418 * 10 9 7 37 37 H 1.09000 * 113.46382 * 92.38492 * 10 9 7 38 38 H 1.08994 * 114.32668 * 220.46863 * 11 10 9 39 39 H 1.09001 * 114.19158 * 87.73157 * 11 10 9 40 40 H 1.08997 * 109.47324 * 304.10768 * 14 12 9 41 41 H 1.09005 * 109.47153 * 64.11305 * 14 12 9 42 42 H 0.97002 * 119.99682 * 4.98190 * 15 14 12 43 43 H 1.09001 * 109.46695 * 299.99892 * 18 16 15 44 44 H 1.09001 * 109.47204 * 59.99474 * 18 16 15 45 45 H 0.97004 * 119.99904 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6458 -1.1672 0.0067 7 6 4.1481 -2.5880 0.0128 8 8 3.3600 -3.5098 0.0127 9 7 5.4732 -2.8343 0.0195 10 6 6.7003 -2.0291 -0.0725 11 6 7.3993 -3.2558 -0.6682 12 6 6.3281 -4.0271 0.1152 13 1 6.6255 -4.2672 1.1360 14 6 5.7727 -5.2369 -0.6389 15 7 6.6370 -6.3967 -0.4058 16 6 6.3998 -7.5548 -1.0530 17 8 5.4706 -7.6371 -1.8280 18 6 7.2884 -8.7479 -0.8127 19 16 6.7160 -10.1391 -1.8193 20 6 7.8982 -11.3601 -1.3542 21 1 8.6717 -11.1185 -0.6403 22 6 7.8359 -12.6321 -1.9061 23 7 6.8934 -12.9264 -2.7766 24 14 9.0896 -13.9263 -1.4136 25 1 10.0372 -13.3476 -0.4276 26 1 8.3904 -15.0872 -0.8064 27 1 9.8383 -14.3730 -2.6159 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 3.2691 1.0695 -0.0005 32 1 1.9342 1.8402 -0.8900 33 1 1.9342 1.8403 0.8899 34 1 4.0128 -0.6559 -0.8832 35 1 4.0055 -0.6509 0.8968 36 1 6.6211 -1.1952 -0.7699 37 1 7.0980 -1.7315 0.8978 38 1 8.4160 -3.4124 -0.3080 39 1 7.3081 -3.3399 -1.7511 40 1 4.7662 -5.4564 -0.2827 41 1 5.7405 -5.0165 -1.7060 42 1 7.3799 -6.3309 0.2144 43 1 8.3135 -8.4984 -1.0866 44 1 7.2506 -9.0228 0.2414 45 1 6.8496 -13.8154 -3.1621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759816738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:11 Heat of formation + Delta-G solvation = -87.023233 kcal Electronic energy + Delta-G solvation = -26729.237861 eV Core-core repulsion = 22680.851284 eV Total energy + Delta-G solvation = -4048.386577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81866 -40.90698 -40.32554 -38.67065 -36.48892 -35.78147 -34.58886 -32.74160 -31.54783 -30.30408 -28.81215 -28.47366 -27.63502 -26.67575 -24.12666 -23.29024 -21.97504 -20.65454 -19.95885 -19.51115 -18.62798 -17.87924 -17.68436 -17.42561 -17.12148 -16.99320 -16.88617 -16.65583 -16.18924 -16.06801 -15.66702 -15.32007 -14.91031 -14.66932 -14.46181 -14.36327 -14.22753 -13.83539 -13.61193 -13.47055 -13.40792 -13.31885 -13.16610 -12.98754 -12.91596 -12.89027 -12.82733 -12.59469 -12.37515 -11.75879 -11.63261 -11.16292 -11.12322 -11.01591 -10.53577 -10.27252 -10.16880 -9.72535 -9.68689 -8.68942 -8.34779 -6.14037 1.23211 1.41952 1.42277 1.52274 1.55482 1.56343 1.61274 1.68529 2.11829 2.26953 2.40037 2.99491 3.27137 3.31810 3.41289 3.62178 3.72938 3.96363 4.02069 4.07123 4.19567 4.27287 4.29834 4.37100 4.41891 4.48681 4.50787 4.53734 4.59814 4.70208 4.76400 4.79649 4.89269 4.97213 5.00797 5.05602 5.28937 5.38900 5.41841 5.50691 6.19976 6.31480 6.46477 6.73776 7.06081 7.10923 7.21503 7.28504 8.74991 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.001750 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.913336 B =15996.540017 C =16892.153795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.624 5.624 3 C 0.066 3.934 4 C 0.495 3.505 5 O -0.564 6.564 6 C -0.139 4.139 7 C 0.522 3.478 8 O -0.560 6.560 9 N -0.652 5.652 10 C 0.109 3.891 11 C -0.140 4.140 12 C 0.118 3.882 13 H 0.123 0.877 14 C 0.122 3.878 15 N -0.703 5.703 16 C 0.530 3.470 17 O -0.573 6.573 18 C -0.124 4.124 19 S -0.162 6.162 20 C -0.543 4.543 21 H 0.087 0.913 22 C 0.010 3.990 23 N -0.914 5.914 24 Si 1.003 2.997 25 H -0.253 1.253 26 H -0.276 1.276 27 H -0.273 1.273 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.033 0.967 41 H 0.051 0.949 42 H 0.421 0.579 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 39.792 10.810 41.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.359 5.359 3 C -0.075 4.075 4 C 0.282 3.718 5 O -0.441 6.441 6 C -0.181 4.181 7 C 0.312 3.688 8 O -0.437 6.437 9 N -0.389 5.389 10 C -0.012 4.012 11 C -0.178 4.178 12 C 0.014 3.986 13 H 0.141 0.859 14 C -0.003 4.003 15 N -0.359 5.359 16 C 0.316 3.684 17 O -0.451 6.451 18 C -0.275 4.275 19 S 0.065 5.935 20 C -0.691 4.691 21 H 0.105 0.895 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.825 3.175 25 H -0.177 1.177 26 H -0.201 1.201 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.260 0.740 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.185 38.614 9.432 39.767 hybrid contribution 0.971 -1.283 1.012 1.900 sum 2.156 37.331 10.443 38.824 Atomic orbital electron populations 1.21660 0.79176 1.03130 1.02072 1.47940 1.07518 1.06913 1.73560 1.22219 0.98291 0.83333 1.03677 1.20834 0.90907 0.83464 0.76592 1.90885 1.70871 1.32931 1.49394 1.21586 0.91941 0.94570 1.10006 1.20460 0.80343 0.91878 0.76136 1.90915 1.55176 1.47964 1.49641 1.49928 1.03831 1.11947 1.73240 1.23264 0.78760 0.95795 1.03330 1.23535 0.99056 0.94734 1.00468 1.23131 0.88938 0.85600 1.00892 0.85929 1.21388 0.93477 0.85640 0.99817 1.45470 1.33950 1.09945 1.46500 1.20255 0.84198 0.84354 0.79598 1.90717 1.32680 1.84067 1.37626 1.23335 1.02874 0.95792 1.05472 1.85747 1.44056 1.05760 1.57945 1.23247 1.16402 0.98565 1.30887 0.89515 1.26202 0.98516 1.00419 0.94302 1.70215 1.33985 1.22066 1.28776 0.84843 0.77395 0.76835 0.78454 1.17681 1.20125 1.19859 0.92550 0.88002 0.93684 0.87828 0.90401 0.90365 0.82302 0.81838 0.87299 0.86067 0.85486 0.89593 0.94848 0.93102 0.74036 0.86256 0.86995 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 10.48 127.77 1.34 2.45 16 2 N -0.62 -8.18 3.27 -871.91 -2.85 -11.04 16 3 C 0.07 0.08 10.60 127.77 1.35 1.44 16 4 C 0.49 10.66 7.67 87.66 0.67 11.33 16 5 O -0.56 -20.64 13.76 20.42 0.28 -20.36 16 6 C -0.14 -1.61 4.33 29.10 0.13 -1.48 16 7 C 0.52 12.21 7.99 87.66 0.70 12.91 16 8 O -0.56 -21.95 13.56 20.43 0.28 -21.67 16 9 N -0.65 -9.98 3.57 -834.22 -2.98 -12.96 16 10 C 0.11 0.27 8.41 83.09 0.70 0.97 16 11 C -0.14 -0.92 8.01 30.84 0.25 -0.67 16 12 C 0.12 1.84 4.09 41.79 0.17 2.01 16 13 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 14 C 0.12 3.51 5.39 86.38 0.47 3.97 16 15 N -0.70 -19.49 5.55 -463.05 -2.57 -22.07 16 16 C 0.53 21.48 7.85 87.66 0.69 22.17 16 17 O -0.57 -30.12 15.86 -3.03 -0.05 -30.17 16 18 C -0.12 -5.08 6.16 71.24 0.44 -4.64 16 19 S -0.16 -9.41 20.57 -56.49 -1.16 -10.58 16 20 C -0.54 -31.67 9.50 67.95 0.65 -31.02 16 21 H 0.09 4.64 7.80 -2.91 -0.02 4.61 16 22 C 0.01 0.58 5.49 84.86 0.47 1.05 16 23 N -0.91 -57.75 13.22 21.65 0.29 -57.46 16 24 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 25 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.66 8.07 -2.38 -0.02 0.64 16 30 H 0.04 0.91 7.42 -2.39 -0.02 0.90 16 31 H 0.10 -0.40 5.77 -2.39 -0.01 -0.41 16 32 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.16 0.53 7.79 -2.39 -0.02 0.51 16 35 H 0.16 0.39 7.79 -2.39 -0.02 0.37 16 36 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.09 0.87 7.95 -2.39 -0.02 0.85 16 40 H 0.03 1.31 7.05 -2.39 -0.02 1.29 16 41 H 0.05 1.67 7.89 -2.38 -0.02 1.65 16 42 H 0.42 7.44 8.48 -92.71 -0.79 6.65 16 43 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 44 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 45 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -111.07 393.79 1.49 -109.58 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.22 Total: 9.90 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 8.01 Total: 20.47 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -8.12 Total: -103.53 kcal Atomic # 8 Polarization: -72.71 SS G_CDS: 0.51 Total: -72.20 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -9.41 SS G_CDS: -1.16 Total: -10.58 kcal Total: -111.07 1.49 -109.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759816738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.555 kcal (2) G-P(sol) polarization free energy of solvation -111.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds