Wall clock time and date at job start Wed Apr 1 2020 02:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 119.99950 * 2 1 4 4 C 1.50702 * 109.46957 * 274.99534 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 S 1.65604 * 119.99536 * 179.97438 * 2 1 3 13 13 O 1.42092 * 106.40380 * 23.54255 * 12 2 1 14 14 O 1.42101 * 106.39783 * 156.46152 * 12 2 1 15 15 N 1.65603 * 107.21518 * 270.00010 * 12 2 1 16 16 C 1.46924 * 120.62941 * 90.00735 * 15 12 2 17 17 C 1.53197 * 108.77630 * 126.36231 * 16 15 12 18 18 C 1.53044 * 109.30732 * 54.63588 * 17 16 15 19 19 C 1.53039 * 109.53823 * 298.63198 * 18 17 16 20 20 H 1.09006 * 109.49776 * 301.41541 * 19 18 17 21 21 C 1.50703 * 109.49926 * 181.35384 * 19 18 17 22 22 N 1.30514 * 126.34287 * 299.69554 * 21 19 18 23 23 N 1.28598 * 109.67090 * 179.82322 * 22 21 19 24 24 C 1.30516 * 109.67393 * 0.44103 * 23 22 21 25 25 N 1.35490 * 126.34943 * 119.99731 * 21 19 18 26 26 C 1.46502 * 126.97723 * 0.02562 * 25 21 19 27 27 C 1.46924 * 120.62848 * 269.72031 * 15 12 2 28 28 H 1.09007 * 109.47205 * 90.00530 * 1 2 3 29 29 H 1.08999 * 109.47284 * 210.00239 * 1 2 3 30 30 H 1.08996 * 109.47487 * 330.00317 * 1 2 3 31 31 H 1.09004 * 109.47166 * 154.99800 * 3 2 1 32 32 H 1.08994 * 109.47507 * 34.99507 * 3 2 1 33 33 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 34 34 H 1.08991 * 109.58403 * 246.15123 * 16 15 12 35 35 H 1.09005 * 109.58529 * 6.43605 * 16 15 12 36 36 H 1.08993 * 109.49767 * 174.58529 * 17 16 15 37 37 H 1.09001 * 109.50032 * 294.68436 * 17 16 15 38 38 H 1.08998 * 109.46280 * 58.65720 * 18 17 16 39 39 H 1.09000 * 109.45665 * 178.62743 * 18 17 16 40 40 H 1.07996 * 126.34961 * 179.73137 * 24 23 22 41 41 H 1.08994 * 109.47504 * 89.99978 * 26 25 21 42 42 H 1.09002 * 109.47080 * 209.99669 * 26 25 21 43 43 H 1.08996 * 109.47135 * 329.99557 * 26 25 21 44 44 H 1.08996 * 109.59173 * 353.42246 * 27 15 12 45 45 H 1.08997 * 109.58714 * 113.84877 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1937 -2.2332 6 6 2.9953 2.9534 -1.6660 7 7 3.4981 3.6499 -0.6701 8 14 3.1670 3.5730 -3.4197 9 1 2.0025 4.4301 -3.7582 10 1 4.4172 4.3647 -3.5448 11 1 3.2180 2.4171 -4.3505 12 16 2.2929 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8580 1.5827 16 6 1.5539 -2.6817 2.2980 17 6 2.2704 -3.8948 2.8997 18 6 3.4371 -3.4150 3.7662 19 6 4.4358 -2.6451 2.8990 20 1 4.7944 -3.2904 2.0970 21 6 5.6005 -2.2016 3.7464 22 7 5.5446 -1.4180 4.7886 23 7 6.7256 -1.2536 5.2704 24 6 7.5896 -1.9173 4.5518 25 7 6.9003 -2.5379 3.5642 26 6 7.4490 -3.3976 2.5124 27 6 3.7466 -1.4226 2.2957 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 3.1858 1.1176 0.4344 32 1 1.6501 2.0042 0.5893 33 1 3.9583 4.4854 -0.8464 34 1 1.0966 -2.0952 3.0948 35 1 0.7839 -3.0171 1.6031 36 1 1.5712 -4.4629 3.5131 37 1 2.6493 -4.5283 2.0976 38 1 3.0603 -2.7617 4.5532 39 1 3.9337 -4.2751 4.2151 40 1 8.6563 -1.9633 4.7143 41 1 7.7127 -2.7897 1.6470 42 1 8.3390 -3.9046 2.8851 43 1 6.7035 -4.1381 2.2227 44 1 4.4243 -0.9296 1.5988 45 1 3.4718 -0.7313 3.0923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045741661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:36 Heat of formation + Delta-G solvation = 8.526883 kcal Electronic energy + Delta-G solvation = -29508.850123 eV Core-core repulsion = 25496.899661 eV Total energy + Delta-G solvation = -4011.950462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.23216 -38.63212 -36.74525 -35.48969 -35.21618 -35.20848 -33.23504 -32.43388 -31.87363 -29.34640 -27.84102 -27.77507 -25.12705 -24.55078 -24.10404 -22.54476 -22.26934 -21.38698 -19.97935 -18.48633 -17.55064 -17.19330 -16.71407 -16.48399 -16.34842 -15.80992 -15.33043 -14.94962 -14.80841 -14.51216 -14.28996 -13.92860 -13.78032 -13.56377 -13.37924 -13.25718 -13.15701 -12.68498 -12.43516 -12.10143 -11.78346 -11.71346 -11.62389 -11.58231 -11.44214 -11.21615 -11.13689 -11.10455 -10.85617 -10.72488 -10.67132 -10.50854 -10.39227 -10.30815 -10.01848 -9.77002 -9.33655 -8.89287 -8.44105 -8.05753 -6.05839 -4.10165 1.10156 1.69027 2.31079 2.82619 3.31298 3.37432 3.38347 3.43530 3.96420 4.12009 4.28971 4.41794 4.44522 4.57716 4.60944 4.74931 4.81629 4.87547 5.01840 5.06357 5.18752 5.21233 5.28421 5.32279 5.38518 5.52718 5.63069 5.71075 5.74533 5.82348 5.86453 5.95291 6.03422 6.05905 6.15347 6.23311 6.33432 6.49349 6.64727 6.73163 7.21969 7.38733 7.59477 7.91024 8.20376 8.66508 8.92007 9.54914 11.02627 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004047 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.848857 B = 6916.609966 C = 8365.345163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 S 2.780 3.220 13 O -0.994 6.994 14 O -0.962 6.962 15 N -1.011 6.011 16 C 0.116 3.884 17 C -0.129 4.129 18 C -0.104 4.104 19 C -0.011 4.011 20 H 0.089 0.911 21 C 0.186 3.814 22 N -0.285 5.285 23 N -0.297 5.297 24 C 0.145 3.855 25 N -0.476 5.476 26 C 0.068 3.932 27 C 0.133 3.867 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.218 0.782 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -17.191 9.669 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.839 5.839 3 C 0.136 3.864 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.978 6.978 14 O -0.946 6.946 15 N -0.848 5.848 16 C -0.010 4.010 17 C -0.168 4.168 18 C -0.142 4.142 19 C -0.034 4.034 20 H 0.107 0.893 21 C -0.082 4.082 22 N -0.125 5.125 23 N -0.136 5.136 24 C -0.142 4.142 25 N -0.166 5.166 26 C -0.075 4.075 27 C 0.006 3.994 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.991 -16.602 10.014 19.617 hybrid contribution 0.876 -0.119 -1.649 1.871 sum 3.866 -16.720 8.365 19.092 Atomic orbital electron populations 1.21213 0.79985 1.01165 1.01437 1.57685 1.14339 1.23414 1.88459 1.19071 0.90957 0.78718 0.97693 1.21479 1.36248 1.06216 0.92903 0.92229 1.24933 0.95124 0.96495 0.97448 1.69925 1.37369 1.15169 1.30914 0.86522 0.77554 0.78846 0.84699 1.20560 1.21062 1.19728 1.02051 0.73512 0.72813 0.72734 1.93521 1.67383 1.60466 1.76399 1.93607 1.40594 1.84958 1.75456 1.58482 1.28511 1.65323 1.32531 1.21429 0.90741 0.91448 0.97360 1.21872 0.97645 0.97733 0.99569 1.21488 0.95225 0.99611 0.97890 1.19891 0.89675 0.98495 0.95340 0.89277 1.24682 0.85352 0.99539 0.98603 1.74247 1.15232 1.14897 1.08100 1.74261 0.95845 1.19677 1.23802 1.26411 1.01129 0.97559 0.89105 1.46209 1.07614 1.38157 1.24658 1.22178 1.00840 0.94578 0.89888 1.21216 0.85833 0.94439 0.97925 0.93135 0.93051 0.91399 0.94617 0.94645 0.92665 0.91226 0.88953 0.90254 0.91381 0.90099 0.91823 0.76601 0.89317 0.88868 0.88993 0.88501 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.33 59.85 0.62 2.48 16 2 N -1.00 -20.79 3.23 -123.06 -0.40 -21.18 16 3 C 0.26 6.50 5.12 -5.20 -0.03 6.48 16 4 C -0.53 -14.96 9.38 -34.44 -0.32 -15.28 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 S 2.78 54.41 6.05 -107.50 -0.65 53.76 16 13 O -0.99 -19.97 15.80 -57.17 -0.90 -20.87 16 14 O -0.96 -22.33 15.69 -57.17 -0.90 -23.23 16 15 N -1.01 -15.14 3.35 -113.77 -0.38 -15.53 16 16 C 0.12 1.34 6.48 -3.71 -0.02 1.31 16 17 C -0.13 -1.19 6.08 -26.61 -0.16 -1.36 16 18 C -0.10 -1.03 5.15 -26.69 -0.14 -1.17 16 19 C -0.01 -0.13 2.68 -91.87 -0.25 -0.38 16 20 H 0.09 0.93 6.89 -51.93 -0.36 0.57 16 21 C 0.19 2.42 6.55 -154.99 -1.01 1.40 16 22 N -0.28 -4.48 12.21 32.79 0.40 -4.08 16 23 N -0.30 -4.46 12.21 29.68 0.36 -4.09 16 24 C 0.15 1.55 12.74 -89.95 -1.15 0.41 16 25 N -0.48 -4.90 3.15 -122.69 -0.39 -5.29 16 26 C 0.07 0.40 10.91 59.85 0.65 1.05 16 27 C 0.13 1.97 5.72 -3.93 -0.02 1.95 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 30 H 0.07 1.09 7.94 -51.93 -0.41 0.67 16 31 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 32 H 0.04 0.91 7.96 -51.93 -0.41 0.50 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.07 6.92 -51.93 -0.36 0.71 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.22 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.46 7.18 -51.93 -0.37 0.08 16 44 H 0.10 1.65 6.91 -51.93 -0.36 1.29 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -37.37 379.09 -10.20 -47.57 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.85 Total: -2.66 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.93 Total: -1.42 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: 0.33 Total: -75.76 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -1.80 Total: -44.10 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 54.41 SS G_CDS: -0.65 Total: 53.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.37 -10.20 -47.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045741661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.099 kcal (2) G-P(sol) polarization free energy of solvation -37.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds