Wall clock time and date at job start Wed Apr 1 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 119.99950 * 2 1 4 4 C 1.50702 * 109.46957 * 274.99534 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 S 1.65604 * 119.99536 * 179.97438 * 2 1 3 13 13 O 1.42092 * 106.40380 * 23.54255 * 12 2 1 14 14 O 1.42101 * 106.39783 * 156.46152 * 12 2 1 15 15 N 1.65603 * 107.21518 * 270.00010 * 12 2 1 16 16 C 1.46924 * 120.62941 * 90.00735 * 15 12 2 17 17 C 1.53197 * 108.77630 * 126.36231 * 16 15 12 18 18 C 1.53044 * 109.30732 * 54.63588 * 17 16 15 19 19 C 1.53039 * 109.53823 * 298.63198 * 18 17 16 20 20 H 1.09006 * 109.49776 * 301.41541 * 19 18 17 21 21 C 1.50703 * 109.49926 * 181.35384 * 19 18 17 22 22 N 1.30514 * 126.34287 * 299.69554 * 21 19 18 23 23 N 1.28598 * 109.67090 * 179.82322 * 22 21 19 24 24 C 1.30516 * 109.67393 * 0.44103 * 23 22 21 25 25 N 1.35490 * 126.34943 * 119.99731 * 21 19 18 26 26 C 1.46502 * 126.97723 * 0.02562 * 25 21 19 27 27 C 1.46924 * 120.62848 * 269.72031 * 15 12 2 28 28 H 1.09007 * 109.47205 * 90.00530 * 1 2 3 29 29 H 1.08999 * 109.47284 * 210.00239 * 1 2 3 30 30 H 1.08996 * 109.47487 * 330.00317 * 1 2 3 31 31 H 1.09004 * 109.47166 * 154.99800 * 3 2 1 32 32 H 1.08994 * 109.47507 * 34.99507 * 3 2 1 33 33 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 34 34 H 1.08991 * 109.58403 * 246.15123 * 16 15 12 35 35 H 1.09005 * 109.58529 * 6.43605 * 16 15 12 36 36 H 1.08993 * 109.49767 * 174.58529 * 17 16 15 37 37 H 1.09001 * 109.50032 * 294.68436 * 17 16 15 38 38 H 1.08998 * 109.46280 * 58.65720 * 18 17 16 39 39 H 1.09000 * 109.45665 * 178.62743 * 18 17 16 40 40 H 1.07996 * 126.34961 * 179.73137 * 24 23 22 41 41 H 1.08994 * 109.47504 * 89.99978 * 26 25 21 42 42 H 1.09002 * 109.47080 * 209.99669 * 26 25 21 43 43 H 1.08996 * 109.47135 * 329.99557 * 26 25 21 44 44 H 1.08996 * 109.59173 * 353.42246 * 27 15 12 45 45 H 1.08997 * 109.58714 * 113.84877 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1937 -2.2332 6 6 2.9953 2.9534 -1.6660 7 7 3.4981 3.6499 -0.6701 8 14 3.1670 3.5730 -3.4197 9 1 2.0025 4.4301 -3.7582 10 1 4.4172 4.3647 -3.5448 11 1 3.2180 2.4171 -4.3505 12 16 2.2929 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8580 1.5827 16 6 1.5539 -2.6817 2.2980 17 6 2.2704 -3.8948 2.8997 18 6 3.4371 -3.4150 3.7662 19 6 4.4358 -2.6451 2.8990 20 1 4.7944 -3.2904 2.0970 21 6 5.6005 -2.2016 3.7464 22 7 5.5446 -1.4180 4.7886 23 7 6.7256 -1.2536 5.2704 24 6 7.5896 -1.9173 4.5518 25 7 6.9003 -2.5379 3.5642 26 6 7.4490 -3.3976 2.5124 27 6 3.7466 -1.4226 2.2957 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 3.1858 1.1176 0.4344 32 1 1.6501 2.0042 0.5893 33 1 3.9583 4.4854 -0.8464 34 1 1.0966 -2.0952 3.0948 35 1 0.7839 -3.0171 1.6031 36 1 1.5712 -4.4629 3.5131 37 1 2.6493 -4.5283 2.0976 38 1 3.0603 -2.7617 4.5532 39 1 3.9337 -4.2751 4.2151 40 1 8.6563 -1.9633 4.7143 41 1 7.7127 -2.7897 1.6470 42 1 8.3390 -3.9046 2.8851 43 1 6.7035 -4.1381 2.2227 44 1 4.4243 -0.9296 1.5988 45 1 3.4718 -0.7313 3.0923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045741661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:35 Heat of formation + Delta-G solvation = -17.446890 kcal Electronic energy + Delta-G solvation = -29509.976430 eV Core-core repulsion = 25496.899661 eV Total energy + Delta-G solvation = -4013.076769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.13331 -39.64695 -38.38910 -37.24145 -36.88554 -36.01598 -34.53897 -34.26244 -32.82294 -30.32557 -29.69893 -28.45054 -26.83000 -25.62761 -25.12662 -24.20852 -23.40415 -22.29096 -20.96110 -19.84604 -19.07681 -18.40560 -18.31874 -17.98262 -17.46635 -17.17340 -16.58356 -16.23035 -15.90303 -15.72396 -15.42500 -15.15731 -15.02523 -14.77364 -14.65291 -14.25250 -14.08841 -13.99291 -13.84415 -13.60501 -13.33639 -13.16452 -13.09044 -13.00788 -12.97033 -12.61887 -12.49968 -12.43475 -12.41304 -12.00839 -11.97678 -11.86890 -11.79300 -11.59628 -11.31772 -11.10208 -10.62716 -10.35782 -10.04548 -9.78632 -8.22774 -6.35712 -0.42907 0.82898 1.37149 1.39015 1.49978 1.58151 1.86159 1.96588 2.37075 2.50882 3.07718 3.14288 3.34814 3.53216 3.64871 3.82618 3.87436 3.96336 4.04069 4.09933 4.17960 4.23343 4.35564 4.43067 4.50363 4.65783 4.66764 4.73266 4.73992 4.81294 4.86749 4.95040 5.02433 5.06245 5.07106 5.12257 5.15596 5.18969 5.38264 5.42286 5.56020 5.67342 5.90958 5.94826 6.06950 6.72614 7.33514 7.72699 8.84785 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004047 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.848857 B = 6916.609966 C = 8365.345163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.007 6.007 3 C 0.273 3.727 4 C -0.550 4.550 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.958 3.042 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.272 1.272 12 S 2.792 3.208 13 O -0.998 6.998 14 O -1.005 7.005 15 N -1.000 6.000 16 C 0.103 3.897 17 C -0.122 4.122 18 C -0.097 4.097 19 C -0.005 4.005 20 H 0.104 0.896 21 C 0.177 3.823 22 N -0.327 5.327 23 N -0.350 5.350 24 C 0.162 3.838 25 N -0.474 5.474 26 C 0.059 3.941 27 C 0.135 3.865 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.012 0.988 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.263 0.737 41 H 0.086 0.914 42 H 0.129 0.871 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -19.306 9.644 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.848 5.848 3 C 0.150 3.850 4 C -0.589 4.589 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.197 1.197 12 S 2.802 3.198 13 O -0.982 6.982 14 O -0.989 6.989 15 N -0.840 5.840 16 C -0.021 4.021 17 C -0.161 4.161 18 C -0.135 4.135 19 C -0.028 4.028 20 H 0.123 0.877 21 C -0.093 4.093 22 N -0.166 5.166 23 N -0.188 5.188 24 C -0.126 4.126 25 N -0.164 5.164 26 C -0.082 4.082 27 C 0.008 3.992 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.278 0.722 41 H 0.104 0.896 42 H 0.147 0.853 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.060 -18.736 9.974 21.445 hybrid contribution 0.874 0.476 -1.590 1.876 sum 3.933 -18.260 8.384 20.474 Atomic orbital electron populations 1.21470 0.77919 1.03402 1.01870 1.57642 1.15860 1.22173 1.89112 1.18592 0.90192 0.80297 0.95955 1.21812 1.36448 1.06595 0.94038 0.92974 1.25779 0.94689 0.96699 1.01609 1.70028 1.37921 1.15602 1.32942 0.85559 0.78200 0.78374 0.79633 1.18954 1.20311 1.19702 1.01449 0.72434 0.72351 0.73550 1.93505 1.67280 1.60125 1.77263 1.93545 1.42650 1.85463 1.77278 1.58090 1.29363 1.65381 1.31211 1.21840 0.90350 0.92242 0.97645 1.21888 0.97710 0.96664 0.99868 1.21464 0.95020 0.99722 0.97339 1.19876 0.89818 0.97181 0.95923 0.87748 1.24783 0.86755 0.99464 0.98262 1.74128 1.16324 1.16447 1.09747 1.74149 0.96441 1.22219 1.26024 1.27247 1.02414 0.95213 0.87727 1.46468 1.06671 1.38100 1.25153 1.22556 1.02516 0.94277 0.88898 1.21131 0.85430 0.95939 0.96692 0.93619 0.89552 0.90502 0.97029 0.95672 0.92358 0.89651 0.88542 0.87089 0.90928 0.91075 0.89907 0.72178 0.89564 0.85257 0.87892 0.91556 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.34 10.33 127.77 1.32 4.66 16 2 N -1.01 -42.71 3.23 -543.24 -1.75 -44.46 16 3 C 0.27 14.33 5.12 85.64 0.44 14.77 16 4 C -0.55 -31.85 9.38 25.60 0.24 -31.61 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.68 5.46 84.66 0.46 1.14 16 7 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 8 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 9 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 12 S 2.79 110.32 6.05 -56.49 -0.34 109.98 16 13 O -1.00 -39.24 15.80 -128.00 -2.02 -41.26 16 14 O -1.01 -48.30 15.69 -128.00 -2.01 -50.31 16 15 N -1.00 -29.70 3.35 -513.86 -1.72 -31.43 16 16 C 0.10 2.18 6.48 86.36 0.56 2.74 16 17 C -0.12 -1.89 6.08 30.67 0.19 -1.71 16 18 C -0.10 -1.73 5.15 30.62 0.16 -1.57 16 19 C -0.01 -0.12 2.68 -11.61 -0.03 -0.15 16 20 H 0.10 2.04 6.89 -2.38 -0.02 2.02 16 21 C 0.18 4.55 6.55 137.98 0.90 5.45 16 22 N -0.33 -10.51 12.21 -50.16 -0.61 -11.12 16 23 N -0.35 -10.57 12.21 -60.00 -0.73 -11.30 16 24 C 0.16 3.23 12.74 180.11 2.30 5.52 16 25 N -0.47 -9.09 3.15 -542.09 -1.71 -10.79 16 26 C 0.06 0.55 10.91 127.77 1.39 1.94 16 27 C 0.14 4.12 5.72 86.22 0.49 4.62 16 28 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.09 2.27 7.79 -2.39 -0.02 2.26 16 30 H 0.08 2.43 7.94 -2.39 -0.02 2.41 16 31 H 0.01 0.66 7.61 -2.38 -0.02 0.65 16 32 H 0.03 1.35 7.96 -2.39 -0.02 1.33 16 33 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.99 6.92 -2.38 -0.02 1.98 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.26 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.10 0.75 7.18 -2.39 -0.02 0.73 16 44 H 0.07 2.42 6.91 -2.39 -0.02 2.40 16 45 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -84.26 379.09 0.82 -83.44 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.99 Total: 9.54 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 8.42 Total: 5.79 kcal Atomic # 7 Polarization: -158.14 SS G_CDS: -6.24 Total: -164.38 kcal Atomic # 8 Polarization: -87.54 SS G_CDS: -4.03 Total: -91.57 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 110.32 SS G_CDS: -0.34 Total: 109.98 kcal Total: -84.26 0.82 -83.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045741661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.992 kcal (2) G-P(sol) polarization free energy of solvation -84.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds