Wall clock time and date at job start Wed Apr 1 2020 02:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99841 * 2 1 4 4 C 1.50703 * 109.47049 * 275.56649 * 3 2 1 5 5 H 1.08001 * 119.99728 * 4.72332 * 4 3 2 6 6 C 1.37873 * 120.00308 * 184.71590 * 4 3 2 7 7 N 1.31514 * 119.99774 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00214 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47312 * 60.00114 * 8 6 4 10 10 H 1.48496 * 109.47228 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47179 * 299.99800 * 8 6 4 12 12 S 1.65603 * 120.00234 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40316 * 159.57202 * 12 2 1 14 14 O 1.42102 * 106.39755 * 26.65419 * 12 2 1 15 15 N 1.65592 * 107.21895 * 273.11309 * 12 2 1 16 16 C 1.46503 * 120.00169 * 62.77598 * 15 12 2 17 17 C 1.50696 * 109.47643 * 164.44635 * 16 15 12 18 18 N 1.30692 * 126.42657 * 270.00118 * 17 16 15 19 19 N 1.28760 * 109.69790 * 179.61365 * 18 17 16 20 20 C 1.30098 * 109.58614 * 359.68713 * 19 18 17 21 21 N 1.35126 * 126.43424 * 89.99311 * 17 16 15 22 22 C 1.46313 * 127.25033 * 1.30755 * 21 17 16 23 23 C 1.53122 * 109.39401 * 207.60068 * 22 21 17 24 24 C 1.52807 * 109.69387 * 270.76003 * 23 22 21 25 25 C 1.52562 * 110.51333 * 61.40745 * 24 23 22 26 26 C 1.50680 * 127.31822 * 180.94838 * 20 19 18 27 27 H 1.09001 * 109.46785 * 270.00135 * 1 2 3 28 28 H 1.08998 * 109.46984 * 30.00080 * 1 2 3 29 29 H 1.09000 * 109.46967 * 150.00645 * 1 2 3 30 30 H 1.08996 * 109.47440 * 35.57209 * 3 2 1 31 31 H 1.08998 * 109.47120 * 155.57315 * 3 2 1 32 32 H 0.97002 * 120.00172 * 179.97438 * 7 6 4 33 33 H 0.97004 * 120.00517 * 242.77575 * 15 12 2 34 34 H 1.09003 * 109.47152 * 44.44246 * 16 15 12 35 35 H 1.09007 * 109.46872 * 284.44496 * 16 15 12 36 36 H 1.09003 * 109.48740 * 87.61840 * 22 21 17 37 37 H 1.09005 * 109.49805 * 327.58092 * 22 21 17 38 38 H 1.08994 * 109.43793 * 150.68873 * 23 22 21 39 39 H 1.08998 * 109.39619 * 30.79783 * 23 22 21 40 40 H 1.09007 * 109.26352 * 301.14336 * 24 23 22 41 41 H 1.09004 * 109.26471 * 181.68133 * 24 23 22 42 42 H 1.08997 * 109.46053 * 273.40486 * 25 24 23 43 43 H 1.09004 * 109.45222 * 153.45493 * 25 24 23 44 44 H 1.08996 * 109.52878 * 107.01280 * 26 20 19 45 45 H 1.08992 * 109.53470 * 346.85761 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3293 1.7727 -1.4141 5 1 1.8446 1.2455 -2.2226 6 6 3.0684 2.9068 -1.6758 7 7 3.6589 3.5485 -0.6914 8 14 3.2311 3.5318 -3.4286 9 1 1.8845 3.8489 -3.9681 10 1 4.0710 4.7563 -3.4415 11 1 3.8679 2.4866 -4.2697 12 16 2.2931 -1.4341 0.0006 13 8 3.6000 -1.1431 -0.4753 14 8 1.4386 -2.3910 -0.6105 15 7 2.4638 -1.9009 1.5802 16 6 1.2784 -2.1952 2.3893 17 6 1.6901 -2.9474 3.6285 18 7 1.7788 -4.2452 3.7550 19 7 2.1669 -4.5395 4.9469 20 6 2.3485 -3.4466 5.6288 21 7 2.0368 -2.4068 4.8174 22 6 2.0640 -0.9872 5.1706 23 6 3.1044 -0.7566 6.2701 24 6 2.4515 -0.9275 7.6410 25 6 1.9120 -2.3453 7.8032 26 6 2.8187 -3.3275 7.0554 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6553 2.0014 0.5978 31 1 3.1894 1.1156 0.4250 32 1 4.1792 4.3461 -0.8755 33 1 3.3486 -1.9795 1.9699 34 1 0.5842 -2.8031 1.8091 35 1 0.7929 -1.2620 2.6752 36 1 1.0810 -0.6832 5.5306 37 1 2.3272 -0.3986 4.2917 38 1 3.5064 0.2528 6.1831 39 1 3.9128 -1.4795 6.1609 40 1 1.6308 -0.2168 7.7395 41 1 3.1905 -0.7326 8.4182 42 1 0.9031 -2.3989 7.3941 43 1 1.8888 -2.6060 8.8613 44 1 3.8449 -2.9605 7.0714 45 1 2.7734 -4.3042 7.5369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046797613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:08 Heat of formation + Delta-G solvation = 1.204357 kcal Electronic energy + Delta-G solvation = -28940.399626 eV Core-core repulsion = 24928.131636 eV Total energy + Delta-G solvation = -4012.267990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.51551 -38.16873 -36.71451 -35.85176 -35.54295 -35.21982 -34.14049 -32.49417 -32.01832 -30.23949 -27.84994 -27.07669 -26.10135 -25.14282 -24.95914 -22.36855 -21.54368 -20.82892 -20.46933 -19.12632 -17.58005 -17.22076 -16.98059 -16.67609 -16.41464 -15.91335 -15.63332 -15.48827 -15.09192 -14.75164 -14.37734 -14.03209 -13.79214 -13.51656 -13.38012 -13.33711 -13.26269 -12.51700 -12.39431 -12.30354 -12.20523 -11.78165 -11.69066 -11.66380 -11.47413 -11.45105 -11.33311 -11.22193 -11.10516 -11.09996 -10.76917 -10.56032 -10.43711 -10.29417 -10.09921 -9.84938 -9.57113 -9.27208 -8.49351 -8.16732 -6.12296 -4.16396 1.02320 1.60898 2.20855 2.67017 3.30563 3.34381 3.38997 3.47981 3.82780 3.96377 4.03698 4.10591 4.14561 4.30093 4.40632 4.56197 4.62283 4.66687 4.78982 4.93681 4.99190 5.08246 5.12036 5.20558 5.23360 5.30449 5.41369 5.48991 5.53950 5.61825 5.64255 5.69909 5.73583 5.77653 5.87436 5.97459 6.21637 6.47638 6.63047 6.89837 7.14702 7.31366 7.53151 7.85282 8.13885 8.57933 8.85939 9.49459 10.96332 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.003110 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.610597 B = 9002.034222 C =10077.816919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.782 3.218 13 O -0.957 6.957 14 O -0.990 6.990 15 N -1.131 6.131 16 C 0.213 3.787 17 C 0.167 3.833 18 N -0.275 5.275 19 N -0.294 5.294 20 C 0.181 3.819 21 N -0.460 5.460 22 C 0.097 3.903 23 C -0.141 4.141 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.036 4.036 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.414 0.586 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 -6.618 20.060 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.199 1.199 12 S 2.789 3.211 13 O -0.941 6.941 14 O -0.973 6.973 15 N -0.890 5.890 16 C 0.084 3.916 17 C -0.102 4.102 18 N -0.116 5.116 19 N -0.134 5.134 20 C -0.086 4.086 21 N -0.152 5.152 22 C -0.025 4.025 23 C -0.179 4.179 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.076 4.076 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.247 0.753 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.542 -8.348 18.901 21.155 hybrid contribution 0.429 2.067 -0.129 2.115 sum -4.113 -6.281 18.771 20.217 Atomic orbital electron populations 1.21418 0.80142 1.03883 1.00112 1.57654 1.14328 1.23306 1.88558 1.19073 0.91136 0.78524 0.97759 1.21459 1.31963 1.10369 0.93419 0.92117 1.24924 0.94927 0.96491 0.97552 1.69896 1.33122 1.18994 1.31432 0.86568 0.78175 0.78190 0.84607 1.20127 1.21149 1.19945 1.02051 0.73569 0.72941 0.72531 1.93658 1.38615 1.84553 1.77262 1.93546 1.68876 1.60945 1.73955 1.56417 1.13356 1.85787 1.33425 1.19400 0.88136 0.97917 0.86140 1.24568 1.04963 0.91705 0.88924 1.74434 1.16544 1.09787 1.10880 1.74193 1.17097 1.22827 0.99311 1.24686 1.03457 0.83618 0.96869 1.46153 1.49450 1.09074 1.10514 1.22165 1.01962 0.77410 1.01001 1.22031 0.97967 1.04268 0.93623 1.21618 1.01010 0.96883 0.96710 1.21621 0.99250 0.94218 1.01081 1.20220 0.99887 1.02190 0.85277 0.94394 0.90165 0.91346 0.94977 0.94004 0.92605 0.75346 0.87079 0.89965 0.88905 0.87771 0.88888 0.90028 0.91078 0.90809 0.91602 0.90131 0.88858 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.69 59.85 0.64 2.05 16 2 N -1.00 -19.22 3.23 -123.05 -0.40 -19.62 16 3 C 0.26 6.08 5.10 -5.19 -0.03 6.05 16 4 C -0.53 -14.52 9.38 -34.44 -0.32 -14.84 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -25.40 13.29 55.43 0.74 -24.66 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 S 2.78 53.40 6.09 -107.50 -0.65 52.75 16 13 O -0.96 -22.54 16.99 -57.17 -0.97 -23.51 16 14 O -0.99 -20.38 16.34 -57.17 -0.93 -21.32 16 15 N -1.13 -16.46 6.04 -11.65 -0.07 -16.53 16 16 C 0.21 2.62 6.48 -5.19 -0.03 2.59 16 17 C 0.17 2.19 7.44 -155.18 -1.15 1.03 16 18 N -0.28 -4.41 12.22 32.75 0.40 -4.00 16 19 N -0.29 -4.39 12.21 32.73 0.40 -3.99 16 20 C 0.18 2.01 6.94 -155.32 -1.08 0.94 16 21 N -0.46 -4.82 3.06 -110.89 -0.34 -5.16 16 22 C 0.10 0.70 6.11 -4.08 -0.02 0.67 16 23 C -0.14 -0.78 5.55 -26.77 -0.15 -0.93 16 24 C -0.12 -0.52 5.67 -27.05 -0.15 -0.68 16 25 C -0.12 -0.62 5.68 -26.87 -0.15 -0.77 16 26 C -0.04 -0.25 5.54 -27.81 -0.15 -0.40 16 27 H 0.04 0.45 8.05 -51.93 -0.42 0.03 16 28 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 29 H 0.07 1.02 7.05 -51.93 -0.37 0.65 16 30 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 31 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.41 5.64 8.65 -34.47 -0.30 5.34 16 34 H 0.11 1.39 7.79 -51.93 -0.40 0.98 16 35 H 0.08 0.79 7.81 -51.92 -0.41 0.38 16 36 H 0.09 0.53 7.82 -51.93 -0.41 0.13 16 37 H 0.10 0.78 7.92 -51.93 -0.41 0.36 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.52 5.69 -51.93 -0.30 0.22 16 40 H 0.07 0.27 8.09 -51.92 -0.42 -0.15 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.41 7.84 -51.93 -0.41 0.01 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.53 6.33 -51.93 -0.33 0.20 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -36.59 375.78 -10.52 -47.11 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.63 Total: -0.54 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.71 Total: -2.61 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: 0.73 Total: -73.96 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -1.91 Total: -44.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 53.40 SS G_CDS: -0.65 Total: 52.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.59 -10.52 -47.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046797613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.315 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds