Wall clock time and date at job start Wed Apr 1 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99510 * 2 1 4 4 C 1.46899 * 111.00075 * 123.94616 * 2 1 3 5 5 C 1.53008 * 109.46531 * 66.04982 * 4 2 1 6 6 C 1.53000 * 109.46582 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.46739 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00211 * 269.99828 * 7 6 5 9 9 C 1.50693 * 109.47419 * 270.00050 * 8 7 6 10 10 H 1.08004 * 120.00170 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00055 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99970 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00144 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46807 * 89.99946 * 13 11 9 15 15 H 1.48496 * 109.47231 * 210.00144 * 13 11 9 16 16 H 1.48497 * 109.47024 * 330.00412 * 13 11 9 17 17 C 1.34779 * 119.99625 * 90.00597 * 7 6 5 18 18 O 1.21281 * 120.00487 * 359.97438 * 17 7 6 19 19 C 1.50701 * 119.99795 * 179.97438 * 17 7 6 20 20 S 1.80999 * 109.47322 * 179.97438 * 19 17 7 21 21 C 1.76195 * 100.00123 * 180.02562 * 20 19 17 22 22 N 1.30186 * 125.68116 * 359.97438 * 21 20 19 23 23 N 1.40171 * 108.03223 * 179.76756 * 22 21 20 24 24 H 0.97000 * 126.29276 * 180.30063 * 23 22 21 25 25 C 1.34907 * 107.41037 * 0.41477 * 23 22 21 26 26 O 1.21833 * 126.20953 * 179.85281 * 25 23 22 27 27 N 1.34782 * 107.57546 * 359.59122 * 25 23 22 28 28 H 0.97000 * 125.83347 * 180.22760 * 27 25 23 29 29 H 1.08994 * 109.47554 * 296.04596 * 1 2 3 30 30 H 1.09002 * 109.47025 * 56.05504 * 1 2 3 31 31 H 1.09004 * 109.46588 * 176.04837 * 1 2 3 32 32 H 1.09007 * 109.46775 * 183.95515 * 3 2 1 33 33 H 1.09007 * 109.47135 * 303.94753 * 3 2 1 34 34 H 1.08993 * 109.47530 * 63.95250 * 3 2 1 35 35 H 1.08996 * 109.47368 * 306.05377 * 4 2 1 36 36 H 1.08996 * 109.47349 * 186.04844 * 4 2 1 37 37 H 1.08996 * 109.46971 * 60.00152 * 5 4 2 38 38 H 1.08996 * 109.47191 * 299.99959 * 5 4 2 39 39 H 1.08996 * 109.47148 * 60.00499 * 6 5 4 40 40 H 1.08996 * 109.47519 * 299.99997 * 6 5 4 41 41 H 1.09001 * 109.47227 * 30.00595 * 8 7 6 42 42 H 1.09006 * 109.47154 * 149.99851 * 8 7 6 43 43 H 0.96999 * 120.00319 * 180.02562 * 12 11 9 44 44 H 1.09003 * 109.47033 * 59.99953 * 19 17 7 45 45 H 1.09004 * 109.47363 * 299.99999 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7658 1.1377 5 6 1.6315 -2.2425 0.9704 6 6 2.1804 -3.0403 2.1550 7 7 1.8313 -4.4541 1.9953 8 6 0.5749 -4.9655 2.5484 9 6 0.8043 -5.4419 3.9595 10 1 1.7876 -5.3705 4.4005 11 6 -0.2414 -5.9680 4.6881 12 7 -1.4389 -6.0545 4.1513 13 14 0.0427 -6.5579 6.4376 14 1 -0.1899 -5.4358 7.3822 15 1 -0.8963 -7.6665 6.7449 16 1 1.4403 -7.0401 6.5766 17 6 2.6663 -5.2843 1.3395 18 8 3.7064 -4.8610 0.8812 19 6 2.3076 -6.7388 1.1756 20 16 3.6188 -7.5840 0.2577 21 6 2.9576 -9.2165 0.2129 22 7 1.8250 -9.5916 0.7337 23 7 1.6618 -10.9601 0.4780 24 1 0.9074 -11.5081 0.7451 25 6 2.7481 -11.3753 -0.2057 26 8 2.9607 -12.5083 -0.6000 27 7 3.5528 -10.3079 -0.3784 28 1 4.4060 -10.3087 -0.8400 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0828 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8525 34 1 1.7043 1.8724 0.9232 35 1 1.5611 -0.3871 2.0628 36 1 3.0797 -0.6609 1.1757 37 1 2.0659 -2.6213 0.0453 38 1 0.5473 -2.3474 0.9324 39 1 1.7463 -2.6617 3.0804 40 1 3.2646 -2.9353 2.1927 41 1 -0.1715 -4.1711 2.5498 42 1 0.2203 -5.7959 1.9377 43 1 -2.1747 -6.4242 4.6640 44 1 1.3692 -6.8220 0.6274 45 1 2.1967 -7.1986 2.1577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287637758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:50 Heat of formation + Delta-G solvation = -14.066937 kcal Electronic energy + Delta-G solvation = -27423.695435 eV Core-core repulsion = 23410.765232 eV Total energy + Delta-G solvation = -4012.930203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.44266 -40.85269 -38.61812 -38.53759 -36.90036 -34.85688 -34.76479 -33.27843 -31.89304 -30.60090 -29.22542 -28.45359 -26.87798 -24.90917 -24.68966 -23.86094 -23.58199 -21.76107 -20.80317 -19.84892 -18.60010 -18.10381 -18.05581 -17.69360 -17.67657 -17.15813 -16.71313 -16.58818 -16.48516 -16.24744 -15.90825 -15.57904 -15.12665 -14.65391 -14.57138 -14.35205 -14.16731 -13.73440 -13.49343 -13.36229 -13.26168 -13.12203 -13.09172 -12.71857 -12.62546 -12.56254 -12.38050 -12.30603 -12.27600 -12.08497 -11.81502 -11.67804 -11.67111 -11.43294 -10.96771 -10.56106 -10.42870 -9.52107 -9.28728 -8.86259 -8.18687 -6.32015 -0.27788 0.55396 0.61692 1.20472 1.42196 1.44582 1.46130 1.52942 1.60296 2.23641 2.44327 2.74040 3.07075 3.13611 3.47406 3.63219 3.98266 4.04904 4.17343 4.26670 4.30232 4.42891 4.48539 4.50557 4.54714 4.66729 4.70001 4.78291 4.84713 4.92750 5.03572 5.04979 5.18060 5.23627 5.27925 5.32829 5.65581 5.75331 5.80321 6.06302 6.08568 6.14573 6.20546 6.49003 6.80141 6.92175 7.15804 7.40757 8.86763 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.008115 B = 0.003318 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3449.706649 B = 8436.530346 C =11064.789581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.115 4.115 6 C 0.122 3.878 7 N -0.586 5.586 8 C 0.250 3.750 9 C -0.545 4.545 10 H 0.056 0.944 11 C 0.029 3.971 12 N -0.916 5.916 13 Si 0.947 3.053 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.270 1.270 17 C 0.534 3.466 18 O -0.572 6.572 19 C -0.141 4.141 20 S 0.124 5.876 21 C 0.243 3.757 22 N -0.293 5.293 23 N -0.534 5.534 24 H 0.465 0.535 25 C 0.653 3.347 26 O -0.589 6.589 27 N -0.621 5.621 28 H 0.455 0.545 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.025 0.975 42 H 0.034 0.966 43 H 0.266 0.734 44 H 0.129 0.871 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 5.550 -7.501 11.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.154 4.154 6 C -0.001 4.001 7 N -0.315 5.315 8 C 0.130 3.870 9 C -0.584 4.584 10 H 0.075 0.925 11 C -0.172 4.172 12 N -0.555 5.555 13 Si 0.773 3.227 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.195 1.195 17 C 0.321 3.679 18 O -0.454 6.454 19 C -0.292 4.292 20 S 0.349 5.651 21 C -0.144 4.144 22 N -0.123 5.123 23 N -0.286 5.286 24 H 0.316 0.684 25 C 0.348 3.652 26 O -0.465 6.465 27 N -0.276 5.276 28 H 0.301 0.699 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.147 0.853 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.810 5.429 -8.258 12.002 hybrid contribution -1.327 -1.150 1.971 2.640 sum 5.483 4.279 -6.287 9.375 Atomic orbital electron populations 1.22446 0.87021 1.02297 1.00912 1.61971 1.08628 1.14871 1.43345 1.22423 1.01091 0.87775 1.01018 1.21975 1.00527 0.92424 0.91467 1.21763 1.00782 0.94595 0.98213 1.21376 1.00832 0.79452 0.98482 1.48059 1.21715 1.09077 1.52698 1.19169 0.80234 0.94697 0.92944 1.21652 0.95742 1.41706 0.99258 0.92539 1.25518 0.94753 0.95549 1.01411 1.69988 1.01139 1.45709 1.38616 0.85716 0.78085 0.78033 0.80831 1.20176 1.21134 1.19491 1.19588 0.83389 0.86834 0.78107 1.90650 1.25472 1.77817 1.51469 1.23762 1.02521 0.96179 1.06774 1.86201 1.23626 0.86869 1.68392 1.26614 0.93431 0.97782 0.96565 1.77735 1.16352 0.93512 1.24746 1.46654 1.21765 1.07007 1.53215 0.68432 1.16801 0.82181 0.84451 0.81779 1.91132 1.77843 1.18103 1.59453 1.43398 1.24182 1.06560 1.53455 0.69899 0.95471 0.90248 0.91983 0.90890 0.90385 0.95335 0.94325 0.90076 0.92363 0.92382 0.90360 0.90503 0.95663 0.94759 0.92444 0.85309 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.32 127.69 1.19 1.64 16 2 N -0.56 -12.79 5.02 -948.82 -4.76 -17.55 16 3 C 0.02 0.43 9.57 127.69 1.22 1.65 16 4 C 0.06 1.54 4.96 86.31 0.43 1.97 16 5 C -0.11 -3.27 5.46 30.60 0.17 -3.10 16 6 C 0.12 3.91 5.41 86.38 0.47 4.38 16 7 N -0.59 -21.66 2.46 -826.16 -2.03 -23.69 16 8 C 0.25 10.73 4.96 85.63 0.43 11.15 16 9 C -0.55 -25.98 9.28 25.60 0.24 -25.74 16 10 H 0.06 2.73 7.81 -2.91 -0.02 2.70 16 11 C 0.03 1.42 5.46 84.65 0.46 1.88 16 12 N -0.92 -47.81 13.29 21.45 0.28 -47.52 16 13 Si 0.95 39.95 29.54 68.60 2.03 41.98 16 14 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 C 0.53 19.11 7.69 87.66 0.67 19.79 16 18 O -0.57 -21.67 15.44 -3.03 -0.05 -21.72 16 19 C -0.14 -4.46 4.22 71.24 0.30 -4.15 16 20 S 0.12 3.15 21.45 -56.49 -1.21 1.94 16 21 C 0.24 6.18 8.33 179.50 1.49 7.68 16 22 N -0.29 -8.44 11.98 -56.73 -0.68 -9.12 16 23 N -0.53 -13.90 7.39 -184.36 -1.36 -15.26 16 24 H 0.47 9.89 8.96 -213.27 -1.91 7.98 16 25 C 0.65 17.99 9.41 179.01 1.68 19.68 16 26 O -0.59 -19.56 18.06 -4.77 -0.09 -19.65 16 27 N -0.62 -13.88 6.09 -323.75 -1.97 -15.85 16 28 H 0.46 7.22 8.96 -92.71 -0.83 6.39 16 29 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 31 H 0.06 1.44 6.47 -2.38 -0.02 1.42 16 32 H 0.07 1.18 8.12 -2.38 -0.02 1.16 16 33 H 0.08 1.15 8.12 -2.38 -0.02 1.13 16 34 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 36 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.74 6.55 -2.39 -0.02 1.72 16 39 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 40 H 0.08 2.45 7.42 -2.39 -0.02 2.43 16 41 H 0.03 1.16 8.07 -2.39 -0.02 1.14 16 42 H 0.03 1.52 6.44 -2.38 -0.02 1.51 16 43 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 44 H 0.13 3.96 7.40 -2.39 -0.02 3.95 16 45 H 0.13 4.39 8.00 -2.39 -0.02 4.37 16 Total: -1.00 -61.59 393.56 -2.80 -64.39 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -1.71 Total: 25.25 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: 8.75 Total: 36.82 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -10.52 Total: -129.00 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.13 Total: -41.37 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.21 Total: 1.94 kcal Total: -61.59 -2.80 -64.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287637758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.319 kcal (2) G-P(sol) polarization free energy of solvation -61.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds