Wall clock time and date at job start Wed Apr 1 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 N 1.30840 * 126.45769 * 269.68529 * 19 18 17 21 21 N 1.28908 * 109.73414 * 179.79519 * 20 19 18 22 22 C 1.29840 * 109.48203 * 0.41650 * 21 20 19 23 23 N 1.34690 * 126.46768 * 89.99913 * 19 18 17 24 24 C 1.46251 * 128.84552 * 0.12235 * 23 19 18 25 25 C 1.53324 * 108.72834 * 162.90900 * 24 23 19 26 26 C 1.53140 * 109.57880 * 50.29273 * 25 24 23 27 27 C 1.50797 * 128.52702 * 179.86227 * 22 21 20 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 1.08995 * 109.60175 * 282.68309 * 24 23 19 39 39 H 1.08999 * 109.59435 * 43.14017 * 24 23 19 40 40 H 1.09000 * 109.45179 * 170.32454 * 25 24 23 41 41 H 1.08995 * 109.45258 * 290.25701 * 25 24 23 42 42 H 1.09000 * 109.50163 * 50.51353 * 26 25 24 43 43 H 1.09002 * 109.49793 * 170.61750 * 26 25 24 44 44 H 1.08998 * 109.73022 * 44.41341 * 27 22 21 45 45 H 1.09004 * 109.72929 * 283.73413 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 7 7.4795 -1.2312 -2.7292 21 7 8.6822 -1.1513 -2.2721 22 6 8.6570 -1.2069 -0.9751 23 7 7.3583 -1.3248 -0.5991 24 6 6.8945 -1.4216 0.7845 25 6 8.0837 -1.7949 1.6774 26 6 9.2576 -0.8550 1.3881 27 6 9.8146 -1.1545 -0.0101 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 6.4866 -0.4618 1.1014 39 1 6.1257 -2.1906 0.8594 40 1 7.7945 -1.7029 2.7243 41 1 8.3827 -2.8228 1.4728 42 1 8.9147 0.1789 1.4293 43 1 10.0393 -1.0095 2.1319 44 1 10.5061 -0.3662 -0.3074 45 1 10.3311 -2.1144 -0.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330403484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:02 Heat of formation + Delta-G solvation = -1.973440 kcal Electronic energy + Delta-G solvation = -29576.806462 eV Core-core repulsion = 25564.400672 eV Total energy + Delta-G solvation = -4012.405790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.40752 -37.46656 -36.78782 -36.26711 -35.62147 -35.32081 -33.46660 -32.71969 -31.05415 -29.50321 -29.18079 -26.25637 -25.56872 -25.29523 -24.68787 -22.93810 -21.42943 -20.87927 -19.77267 -19.03469 -17.51337 -17.23681 -16.79950 -16.51031 -16.39298 -16.03211 -15.25183 -14.96461 -14.58641 -14.55587 -14.49402 -14.28294 -13.77110 -13.52394 -13.40991 -13.15434 -12.80968 -12.53401 -12.10080 -11.88410 -11.84880 -11.63195 -11.59114 -11.56810 -11.45315 -11.43726 -11.31764 -11.25387 -11.07381 -11.00426 -10.55202 -10.43934 -10.31674 -10.19591 -10.18351 -9.54641 -9.31215 -9.16396 -8.60456 -8.08077 -6.21225 -4.30644 1.05844 1.71802 2.33843 2.74736 3.09539 3.17557 3.19883 3.46581 3.88386 4.04511 4.13873 4.19382 4.21448 4.32292 4.34436 4.79804 4.88518 4.93229 4.94470 5.08207 5.08960 5.24640 5.30400 5.33019 5.44595 5.47452 5.51720 5.68829 5.73936 5.78398 5.91584 6.06042 6.08196 6.25509 6.56519 6.73702 6.79399 6.80098 7.00720 7.06217 7.41359 7.50342 7.68114 7.94598 8.14476 8.66267 8.71258 9.35276 10.83702 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.004982 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.473486 B = 5619.250521 C = 7829.559146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.279 1.279 12 N -0.990 5.990 13 C 0.103 3.897 14 S 2.784 3.216 15 O -0.991 6.991 16 O -0.975 6.975 17 N -1.124 6.124 18 C 0.215 3.785 19 C 0.173 3.827 20 N -0.280 5.280 21 N -0.293 5.293 22 C 0.175 3.825 23 N -0.459 5.459 24 C 0.096 3.904 25 C -0.135 4.135 26 C -0.128 4.128 27 C -0.032 4.032 28 H 0.013 0.987 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.265 0.735 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.820 -6.493 1.057 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.833 5.833 13 C -0.043 4.043 14 S 2.792 3.208 15 O -0.974 6.974 16 O -0.959 6.959 17 N -0.883 5.883 18 C 0.086 3.914 19 C -0.096 4.096 20 N -0.122 5.122 21 N -0.134 5.134 22 C -0.092 4.092 23 N -0.150 5.150 24 C -0.026 4.026 25 C -0.173 4.173 26 C -0.166 4.166 27 C -0.072 4.072 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.118 0.882 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.810 -5.950 -1.033 14.162 hybrid contribution 0.079 -0.458 2.775 2.814 sum 12.889 -6.407 1.743 14.499 Atomic orbital electron populations 1.22052 0.97871 0.99715 1.00820 1.18738 0.91984 0.92752 0.80049 0.92330 1.21289 1.32194 1.13050 0.90145 0.92087 1.24932 0.95006 0.94953 0.98925 1.69868 1.35866 1.22414 1.23992 0.86619 0.78874 0.79774 0.82374 1.21216 1.20252 1.20445 1.57755 1.64118 1.21503 1.39906 1.21244 0.99263 0.81916 1.01898 1.01864 0.72279 0.73304 0.73340 1.93561 1.85734 1.76276 1.41873 1.93608 1.83284 1.32261 1.86790 1.56153 1.32465 1.13915 1.85743 1.19386 0.82399 0.85331 1.04311 1.24455 0.97093 1.05795 0.82245 1.74534 0.95136 1.17899 1.24590 1.74084 1.14523 1.18898 1.05883 1.24714 0.86109 1.04583 0.93825 1.46024 1.07189 1.53121 1.08672 1.22200 0.98472 1.05145 0.76811 1.21938 0.94263 1.00627 1.00477 1.21725 0.98297 1.00419 0.96130 1.20225 0.92064 1.04373 0.90503 0.96804 0.94821 0.88937 0.92483 0.93589 0.93212 0.90098 0.75305 0.89631 0.87277 0.88210 0.87932 0.88638 0.90528 0.90768 0.89607 0.88248 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.97 37.16 0.33 -2.96 16 2 C 0.27 6.10 2.62 -69.09 -0.18 5.92 16 3 H 0.06 1.50 6.91 -51.93 -0.36 1.14 16 4 C -0.53 -12.27 7.99 -34.44 -0.28 -12.55 16 5 H 0.06 1.33 7.33 -52.49 -0.38 0.95 16 6 C 0.07 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.88 -22.93 11.32 55.43 0.63 -22.30 16 8 Si 0.90 18.57 29.54 -169.99 -5.02 13.55 16 9 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 12 N -0.99 -18.97 3.12 -115.85 -0.36 -19.33 16 13 C 0.10 1.67 9.28 59.85 0.56 2.22 16 14 S 2.78 52.51 6.09 -107.50 -0.66 51.85 16 15 O -0.99 -19.86 16.68 -57.17 -0.95 -20.82 16 16 O -0.98 -21.72 16.70 -57.17 -0.95 -22.67 16 17 N -1.12 -17.55 6.05 -11.65 -0.07 -17.62 16 18 C 0.21 2.95 6.65 -5.19 -0.03 2.92 16 19 C 0.17 2.51 7.46 -155.45 -1.16 1.35 16 20 N -0.28 -4.77 12.23 32.70 0.40 -4.37 16 21 N -0.29 -4.70 12.21 32.76 0.40 -4.30 16 22 C 0.18 2.20 7.75 -155.30 -1.20 1.00 16 23 N -0.46 -5.65 3.11 -110.86 -0.35 -6.00 16 24 C 0.10 0.93 6.75 -4.01 -0.03 0.90 16 25 C -0.14 -0.94 5.94 -26.49 -0.16 -1.10 16 26 C -0.13 -0.81 5.96 -26.42 -0.16 -0.97 16 27 C -0.03 -0.25 6.33 -27.60 -0.17 -0.43 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 31 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.67 7.79 -51.92 -0.40 0.27 16 34 H 0.08 1.30 7.02 -51.93 -0.36 0.94 16 35 H 0.41 6.17 8.64 -34.47 -0.30 5.87 16 36 H 0.09 1.01 7.76 -51.93 -0.40 0.61 16 37 H 0.11 1.47 7.75 -51.93 -0.40 1.07 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 0.94 7.85 -51.93 -0.41 0.53 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 42 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -32.71 375.72 -10.52 -43.23 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.67 Total: 5.32 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.58 Total: -2.21 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: 0.65 Total: -73.92 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.91 Total: -43.49 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -0.66 Total: 51.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.71 -10.52 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330403484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.262 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds