Wall clock time and date at job start Wed Apr 1 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 N 1.30840 * 126.45769 * 269.68529 * 19 18 17 21 21 N 1.28908 * 109.73414 * 179.79519 * 20 19 18 22 22 C 1.29840 * 109.48203 * 0.41650 * 21 20 19 23 23 N 1.34690 * 126.46768 * 89.99913 * 19 18 17 24 24 C 1.46251 * 128.84552 * 0.12235 * 23 19 18 25 25 C 1.53324 * 108.72834 * 162.90900 * 24 23 19 26 26 C 1.53140 * 109.57880 * 50.29273 * 25 24 23 27 27 C 1.50797 * 128.52702 * 179.86227 * 22 21 20 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 1.08995 * 109.60175 * 282.68309 * 24 23 19 39 39 H 1.08999 * 109.59435 * 43.14017 * 24 23 19 40 40 H 1.09000 * 109.45179 * 170.32454 * 25 24 23 41 41 H 1.08995 * 109.45258 * 290.25701 * 25 24 23 42 42 H 1.09000 * 109.50163 * 50.51353 * 26 25 24 43 43 H 1.09002 * 109.49793 * 170.61750 * 26 25 24 44 44 H 1.08998 * 109.73022 * 44.41341 * 27 22 21 45 45 H 1.09004 * 109.72929 * 283.73413 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 7 7.4795 -1.2312 -2.7292 21 7 8.6822 -1.1513 -2.2721 22 6 8.6570 -1.2069 -0.9751 23 7 7.3583 -1.3248 -0.5991 24 6 6.8945 -1.4216 0.7845 25 6 8.0837 -1.7949 1.6774 26 6 9.2576 -0.8550 1.3881 27 6 9.8146 -1.1545 -0.0101 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 6.4866 -0.4618 1.1014 39 1 6.1257 -2.1906 0.8594 40 1 7.7945 -1.7029 2.7243 41 1 8.3827 -2.8228 1.4728 42 1 8.9147 0.1789 1.4293 43 1 10.0393 -1.0095 2.1319 44 1 10.5061 -0.3662 -0.3074 45 1 10.3311 -2.1144 -0.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330403484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:01 Heat of formation + Delta-G solvation = -24.736360 kcal Electronic energy + Delta-G solvation = -29577.793536 eV Core-core repulsion = 25564.400672 eV Total energy + Delta-G solvation = -4013.392864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.42192 -38.40865 -38.20155 -37.89652 -36.95566 -36.82191 -34.47573 -34.35662 -31.93474 -30.90627 -30.41728 -27.38780 -27.19086 -26.93508 -25.42016 -23.73657 -22.65219 -22.41536 -20.55484 -20.45204 -18.91485 -18.59833 -18.27328 -17.97662 -17.47632 -17.29100 -16.77861 -16.10659 -15.77681 -15.30511 -15.25457 -15.18844 -15.07279 -14.83520 -14.65665 -14.47589 -14.26505 -13.70720 -13.47138 -13.30231 -13.23954 -13.19357 -13.14658 -12.95444 -12.71940 -12.64756 -12.62068 -12.20511 -12.13633 -12.09220 -12.08417 -11.89297 -11.87866 -11.46549 -11.18709 -11.11059 -10.68053 -10.44324 -10.23486 -9.67175 -8.03961 -6.19496 -0.43266 0.68136 1.43182 1.49274 1.53289 1.59691 1.63929 2.05400 2.49785 2.56731 2.95633 3.25083 3.29516 3.42245 3.52049 3.65011 3.74708 3.91398 4.03550 4.17811 4.26252 4.36389 4.42697 4.56027 4.57645 4.73506 4.78623 4.82847 4.83836 4.91173 4.97590 4.99926 5.05393 5.07001 5.14057 5.18383 5.25194 5.29886 5.61550 5.65977 5.82815 5.83808 5.91499 6.13305 6.31948 6.89494 7.50327 7.59467 9.00584 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.004982 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.473486 B = 5619.250521 C = 7829.559146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.272 3.728 3 H 0.024 0.976 4 C -0.525 4.525 5 H 0.079 0.921 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.299 1.299 10 H -0.271 1.271 11 H -0.257 1.257 12 N -0.991 5.991 13 C 0.094 3.906 14 S 2.802 3.198 15 O -1.002 7.002 16 O -1.014 7.014 17 N -1.117 6.117 18 C 0.213 3.787 19 C 0.167 3.833 20 N -0.320 5.320 21 N -0.336 5.336 22 C 0.185 3.815 23 N -0.456 5.456 24 C 0.085 3.915 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.033 4.033 28 H 0.015 0.985 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.418 0.582 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.557 -8.605 2.728 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.168 3.832 3 H 0.042 0.958 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.226 1.226 10 H -0.196 1.196 11 H -0.181 1.181 12 N -0.834 5.834 13 C -0.051 4.051 14 S 2.811 3.189 15 O -0.985 6.985 16 O -0.998 6.998 17 N -0.878 5.878 18 C 0.085 3.915 19 C -0.103 4.103 20 N -0.161 5.161 21 N -0.176 5.176 22 C -0.083 4.083 23 N -0.146 5.146 24 C -0.036 4.036 25 C -0.168 4.168 26 C -0.160 4.160 27 C -0.072 4.072 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.251 0.749 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 14.560 -8.088 0.622 16.668 hybrid contribution -0.430 0.197 2.217 2.267 sum 14.130 -7.891 2.838 16.431 Atomic orbital electron populations 1.21960 0.98139 1.00117 0.99778 1.18439 0.91794 0.91503 0.81468 0.95847 1.21576 1.31637 1.13110 0.90069 0.90328 1.25737 0.95243 0.95532 1.01999 1.70036 1.37535 1.24207 1.24257 0.85620 0.79480 0.78438 0.78145 1.22555 1.19630 1.18140 1.57585 1.64518 1.22685 1.38595 1.21498 1.00740 0.80211 1.02660 1.01110 0.72635 0.72150 0.72999 1.93542 1.86253 1.76257 1.42484 1.93552 1.84246 1.34785 1.87232 1.55826 1.31287 1.15133 1.85539 1.19580 0.82195 0.84237 1.05532 1.24444 0.97117 1.05974 0.82802 1.74426 0.96030 1.19331 1.26311 1.73996 1.14479 1.21151 1.07939 1.25566 0.87353 1.01878 0.93550 1.46195 1.06926 1.52330 1.09151 1.22518 1.00190 1.05137 0.75774 1.21980 0.93177 1.01118 1.00536 1.21739 0.98886 0.99738 0.95670 1.20526 0.90640 1.05818 0.90202 0.96586 0.93565 0.91277 0.92964 0.93087 0.90333 0.89737 0.74876 0.87224 0.87052 0.88867 0.87220 0.87002 0.89655 0.91660 0.86699 0.87402 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.41 8.97 71.98 0.65 -5.76 16 2 C 0.27 12.39 2.62 44.24 0.12 12.51 16 3 H 0.02 1.24 6.91 -2.39 -0.02 1.23 16 4 C -0.52 -23.76 7.99 25.60 0.20 -23.56 16 5 H 0.08 3.21 7.33 -2.91 -0.02 3.19 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -48.40 11.32 21.45 0.24 -48.15 16 8 Si 0.96 36.75 29.54 68.60 2.03 38.77 16 9 H -0.30 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 11 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 12 N -0.99 -37.06 3.12 -520.45 -1.62 -38.69 16 13 C 0.09 2.84 9.28 127.77 1.19 4.02 16 14 S 2.80 105.03 6.09 -56.49 -0.34 104.69 16 15 O -1.00 -39.40 16.68 -128.00 -2.14 -41.53 16 16 O -1.01 -46.16 16.70 -128.00 -2.14 -48.30 16 17 N -1.12 -34.23 6.05 -190.78 -1.15 -35.39 16 18 C 0.21 5.55 6.65 85.64 0.57 6.12 16 19 C 0.17 4.70 7.46 138.14 1.03 5.74 16 20 N -0.32 -10.91 12.23 -50.46 -0.62 -11.52 16 21 N -0.34 -10.69 12.21 -50.28 -0.61 -11.30 16 22 C 0.19 4.38 7.75 138.14 1.07 5.45 16 23 N -0.46 -10.49 3.11 -504.67 -1.57 -12.06 16 24 C 0.09 1.43 6.75 86.53 0.58 2.01 16 25 C -0.13 -1.33 5.94 30.75 0.18 -1.15 16 26 C -0.12 -1.12 5.96 30.80 0.18 -0.94 16 27 C -0.03 -0.42 6.33 30.03 0.19 -0.23 16 28 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.05 1.93 7.67 -2.39 -0.02 1.91 16 30 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 31 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.90 7.79 -2.38 -0.02 1.88 16 34 H 0.08 2.50 7.02 -2.39 -0.02 2.48 16 35 H 0.42 12.44 8.64 -96.75 -0.84 11.60 16 36 H 0.11 2.32 7.76 -2.39 -0.02 2.30 16 37 H 0.11 2.86 7.75 -2.39 -0.02 2.84 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 1.67 7.85 -2.39 -0.02 1.66 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 42 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 43 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -71.80 375.72 -1.34 -73.14 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.18 Total: 24.99 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.41 Total: 5.35 kcal Atomic # 7 Polarization: -151.78 SS G_CDS: -5.34 Total: -157.11 kcal Atomic # 8 Polarization: -85.55 SS G_CDS: -4.27 Total: -89.83 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: 105.03 SS G_CDS: -0.34 Total: 104.69 kcal Total: -71.80 -1.34 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330403484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.402 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds