Wall clock time and date at job start Wed Apr 1 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99704 * 2 1 4 4 C 1.50700 * 109.47069 * 274.99773 * 3 2 1 5 5 H 1.07999 * 120.00433 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99696 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99931 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99672 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47565 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47443 * 120.00152 * 8 6 4 11 11 H 1.48507 * 109.46824 * 239.99598 * 8 6 4 12 12 S 1.65605 * 120.00125 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.39984 * 336.46147 * 12 2 1 14 14 O 1.42093 * 106.40136 * 203.53842 * 12 2 1 15 15 N 1.65605 * 107.21424 * 90.00182 * 12 2 1 16 16 C 1.46923 * 120.62960 * 269.97264 * 15 12 2 17 17 C 1.53187 * 108.77578 * 126.41481 * 16 15 12 18 18 C 1.53045 * 109.33790 * 54.62153 * 17 16 15 19 19 C 1.53040 * 109.53814 * 298.68474 * 18 17 16 20 20 H 1.08999 * 109.49819 * 301.34868 * 19 18 17 21 21 C 1.52999 * 109.49844 * 181.28194 * 19 18 17 22 22 N 1.46500 * 109.47084 * 65.06013 * 21 19 18 23 23 C 1.34429 * 126.81895 * 124.99739 * 22 21 19 24 24 N 1.30837 * 108.07952 * 180.02562 * 23 22 21 25 25 C 1.33246 * 109.82318 * 359.97438 * 24 23 22 26 26 N 1.30712 * 108.94935 * 0.27015 * 25 24 23 27 27 C 1.46921 * 120.63076 * 90.00434 * 15 12 2 28 28 H 1.08997 * 109.47236 * 269.99896 * 1 2 3 29 29 H 1.08996 * 109.47138 * 30.00325 * 1 2 3 30 30 H 1.09002 * 109.47000 * 149.99835 * 1 2 3 31 31 H 1.08996 * 109.47525 * 35.00255 * 3 2 1 32 32 H 1.08998 * 109.46799 * 155.00060 * 3 2 1 33 33 H 0.96999 * 119.99493 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.59005 * 246.20479 * 16 15 12 35 35 H 1.09000 * 109.58624 * 6.49028 * 16 15 12 36 36 H 1.09000 * 109.50445 * 174.58392 * 17 16 15 37 37 H 1.08997 * 109.50407 * 294.65776 * 17 16 15 38 38 H 1.08997 * 109.48981 * 178.64231 * 18 17 16 39 39 H 1.09007 * 109.43094 * 58.68660 * 18 17 16 40 40 H 1.09002 * 109.47279 * 305.06300 * 21 19 18 41 41 H 1.08995 * 109.47424 * 185.06479 * 21 19 18 42 42 H 1.08000 * 125.96300 * 0.02949 * 23 22 21 43 43 H 1.08002 * 125.52127 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.58739 * 113.79766 * 27 15 12 45 45 H 1.08996 * 109.70380 * 353.43655 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2332 6 6 3.0006 2.9504 -1.6664 7 7 3.5033 3.6470 -0.6705 8 14 3.1784 3.5667 -3.4208 9 1 2.5301 2.6074 -4.3507 10 1 2.5278 4.8956 -3.5470 11 1 4.6193 3.6869 -3.7596 12 16 2.2931 -1.4342 -0.0006 13 8 1.4114 -2.4068 0.5433 14 8 3.5759 -1.1570 0.5439 15 7 2.5382 -1.8579 -1.5827 16 6 1.5544 -2.6820 -2.2979 17 6 1.1558 -1.9633 -3.5907 18 6 2.4140 -1.6419 -4.4005 19 6 3.3207 -0.7127 -3.5903 20 1 2.7797 0.2015 -3.3460 21 6 4.5632 -0.3664 -4.4133 22 7 4.1680 0.4103 -5.5909 23 6 4.6377 1.6160 -5.9555 24 7 4.0347 1.9690 -7.0617 25 6 3.1775 1.0186 -7.4323 26 7 3.2192 0.0458 -6.5601 27 6 3.7438 -1.4173 -2.2975 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6501 2.0043 0.5894 32 1 3.1857 1.1177 0.4343 33 1 3.9667 4.4806 -0.8471 34 1 1.9944 -3.6498 -2.5387 35 1 0.6742 -2.8265 -1.6714 36 1 0.5000 -2.6066 -4.1774 37 1 0.6342 -1.0379 -3.3465 38 1 2.1314 -1.1519 -5.3322 39 1 2.9474 -2.5659 -4.6237 40 1 5.0553 -1.2851 -4.7325 41 1 5.2502 0.2211 -3.8043 42 1 5.3828 2.1925 -5.4276 43 1 2.5468 1.0493 -8.3084 44 1 4.3623 -2.2820 -2.5382 45 1 4.3094 -0.7260 -1.6728 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330716079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:55 Heat of formation + Delta-G solvation = 22.024873 kcal Electronic energy + Delta-G solvation = -30804.773369 eV Core-core repulsion = 26793.408224 eV Total energy + Delta-G solvation = -4011.365145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92836 -38.57842 -36.78681 -35.53331 -35.28502 -34.66212 -32.59602 -31.86655 -31.16869 -30.97177 -27.87116 -26.45194 -25.17611 -24.30193 -22.71255 -22.41634 -21.81528 -21.22728 -19.97324 -18.42126 -17.39735 -17.18702 -16.84324 -16.45698 -15.88369 -15.64143 -15.00879 -14.75408 -14.44743 -14.30444 -14.12002 -13.89974 -13.75809 -13.43618 -13.33369 -13.13495 -12.52910 -12.44061 -12.39600 -12.22854 -11.89318 -11.76451 -11.56722 -11.36414 -11.26343 -11.20527 -11.14172 -10.92495 -10.69928 -10.59618 -10.37931 -10.34220 -10.07628 -9.81050 -9.73394 -9.56562 -9.44227 -8.72685 -8.58860 -8.07874 -6.21875 -4.28806 1.18366 1.76542 2.44272 3.05316 3.10672 3.23389 3.27453 3.39076 4.06177 4.23554 4.44291 4.50552 4.71049 4.86243 4.96017 5.05617 5.10993 5.12719 5.22658 5.27331 5.41264 5.48244 5.52844 5.59718 5.72808 5.73459 5.91940 5.93884 6.03203 6.08574 6.19704 6.29085 6.33542 6.39481 6.43723 6.52938 6.64672 6.77375 6.83562 6.93758 7.27508 7.36602 7.56587 7.76023 8.05964 8.20203 8.76844 9.36639 10.85447 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.006051 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.534102 B = 4626.065227 C = 6118.351238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.243 3.757 4 C -0.537 4.537 5 H 0.067 0.933 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.883 3.117 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.281 1.281 12 S 2.786 3.214 13 O -0.998 6.998 14 O -0.977 6.977 15 N -1.001 6.001 16 C 0.124 3.876 17 C -0.131 4.131 18 C -0.117 4.117 19 C -0.127 4.127 20 H 0.113 0.887 21 C 0.131 3.869 22 N -0.364 5.364 23 C 0.254 3.746 24 N -0.551 5.551 25 C 0.189 3.811 26 N -0.312 5.312 27 C 0.140 3.860 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.264 0.736 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.212 0.788 43 H 0.212 0.788 44 H 0.062 0.938 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -9.187 -7.917 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.839 5.839 3 C 0.121 3.879 4 C -0.576 4.576 5 H 0.085 0.915 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.711 3.289 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.207 1.207 12 S 2.795 3.205 13 O -0.982 6.982 14 O -0.961 6.961 15 N -0.838 5.838 16 C -0.001 4.001 17 C -0.170 4.170 18 C -0.155 4.155 19 C -0.147 4.147 20 H 0.131 0.869 21 C 0.009 3.991 22 N -0.154 5.154 23 C -0.042 4.042 24 N -0.279 5.279 25 C -0.114 4.114 26 N -0.141 5.141 27 C 0.014 3.986 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.229 0.771 43 H 0.229 0.771 44 H 0.081 0.919 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.508 -9.905 -7.216 12.265 hybrid contribution 0.083 0.998 -1.152 1.526 sum -0.424 -8.907 -8.368 12.229 Atomic orbital electron populations 1.21207 0.80162 1.01984 1.00593 1.57666 1.14179 1.23486 1.88533 1.19221 0.92179 0.78969 0.97510 1.21625 1.36360 1.06723 0.92902 0.91522 1.24938 0.95438 0.96508 0.96863 1.69941 1.36681 1.15079 1.30685 0.86767 0.77919 0.79474 0.84704 1.19339 1.21114 1.20730 1.01787 0.73117 0.72661 0.72930 1.93531 1.67355 1.60405 1.76920 1.93565 1.40799 1.85283 1.76438 1.58162 1.29358 1.64741 1.31573 1.21334 0.91512 0.93331 0.93966 1.21878 0.98083 1.01047 0.96035 1.21733 0.95486 0.98792 0.99447 1.22063 0.95763 1.02302 0.94586 0.86914 1.21953 0.98178 0.96283 0.82731 1.50474 1.29341 1.15503 1.20110 1.26028 0.98607 0.86284 0.93328 1.70500 1.13245 1.30262 1.13883 1.25938 0.97861 0.88189 0.99373 1.77821 1.10401 1.24646 1.01228 1.21148 0.85966 0.98419 0.93078 0.93759 0.90884 0.93032 0.94485 0.93123 0.92601 0.91745 0.89912 0.91424 0.91323 0.88932 0.92713 0.89304 0.87595 0.77121 0.77139 0.91931 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.80 10.31 59.85 0.62 2.41 16 2 N -1.00 -19.79 3.23 -123.06 -0.40 -20.19 16 3 C 0.24 5.72 5.41 -5.19 -0.03 5.69 16 4 C -0.54 -12.89 8.99 -34.44 -0.31 -13.20 16 5 H 0.07 1.55 5.51 -52.49 -0.29 1.26 16 6 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -23.96 13.29 55.43 0.74 -23.22 16 8 Si 0.88 19.64 27.90 -169.99 -4.74 14.90 16 9 H -0.27 -5.99 6.92 56.52 0.39 -5.60 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -5.86 6.98 56.52 0.39 -5.46 16 12 S 2.79 53.51 6.07 -107.50 -0.65 52.85 16 13 O -1.00 -19.94 15.92 -57.17 -0.91 -20.85 16 14 O -0.98 -21.55 15.41 -57.17 -0.88 -22.43 16 15 N -1.00 -15.87 3.35 -113.53 -0.38 -16.25 16 16 C 0.12 1.65 6.38 -3.71 -0.02 1.63 16 17 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 18 C -0.12 -1.54 4.94 -26.69 -0.13 -1.67 16 19 C -0.13 -1.84 2.54 -90.50 -0.23 -2.07 16 20 H 0.11 2.05 5.30 -51.93 -0.28 1.78 16 21 C 0.13 1.65 6.00 -4.04 -0.02 1.62 16 22 N -0.36 -5.31 3.69 -62.63 -0.23 -5.54 16 23 C 0.25 3.82 10.78 -90.65 -0.98 2.84 16 24 N -0.55 -8.81 11.19 -15.83 -0.18 -8.98 16 25 C 0.19 2.69 13.03 -91.81 -1.20 1.49 16 26 N -0.31 -4.66 9.80 29.29 0.29 -4.37 16 27 C 0.14 2.07 5.66 -3.71 -0.02 2.05 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 31 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 32 H 0.05 1.31 6.92 -51.93 -0.36 0.95 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.09 7.12 -51.93 -0.37 0.72 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.34 5.33 -51.93 -0.28 1.07 16 39 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.11 1.21 8.09 -51.93 -0.42 0.79 16 42 H 0.21 2.69 7.91 -52.49 -0.42 2.28 16 43 H 0.21 2.17 8.06 -52.49 -0.42 1.74 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.64 7.13 -51.93 -0.37 1.27 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -31.96 367.06 -10.96 -42.92 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.56 Total: 5.12 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.58 Total: 0.52 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -0.16 Total: -78.56 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.79 Total: -43.28 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.74 Total: 14.90 kcal Atomic # 16 Polarization: 53.51 SS G_CDS: -0.65 Total: 52.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.96 -10.96 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330716079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.942 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds