Wall clock time and date at job start Wed Apr 1 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 C 1.50699 * 109.47102 * 240.00221 * 2 1 3 5 5 H 1.08001 * 120.00121 * 239.99632 * 4 2 1 6 6 C 1.37883 * 119.99804 * 60.00162 * 4 2 1 7 7 N 1.31511 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99773 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47201 * 89.99674 * 8 6 4 10 10 H 1.48500 * 109.46733 * 209.99897 * 8 6 4 11 11 H 1.48499 * 109.46932 * 329.99364 * 8 6 4 12 12 N 1.46505 * 109.47228 * 120.00492 * 2 1 3 13 13 C 1.46494 * 120.00309 * 59.99976 * 12 2 1 14 14 S 1.65605 * 119.99527 * 239.99942 * 12 2 1 15 15 O 1.42096 * 106.40590 * 336.45948 * 14 12 2 16 16 O 1.42108 * 106.39755 * 203.53861 * 14 12 2 17 17 N 1.65597 * 107.21939 * 90.00151 * 14 12 2 18 18 C 1.46499 * 119.99926 * 64.71969 * 17 14 12 19 19 H 1.09008 * 109.47522 * 335.27388 * 18 17 14 20 20 C 1.52996 * 109.47213 * 95.27634 * 18 17 14 21 21 C 1.50697 * 109.47249 * 215.27890 * 18 17 14 22 22 N 1.30510 * 126.37162 * 315.02351 * 21 18 17 23 23 N 1.28567 * 109.66918 * 179.97438 * 22 21 18 24 24 C 1.30676 * 109.63509 * 359.95664 * 23 22 21 25 25 N 1.35166 * 107.33461 * 359.87553 * 24 23 22 26 26 C 1.46794 * 111.15283 * 180.02562 * 25 24 23 27 27 C 1.54436 * 105.55595 * 17.22923 * 26 25 24 28 28 C 1.51347 * 142.71621 * 180.25708 * 24 23 22 29 29 H 1.09002 * 109.47103 * 299.99110 * 1 2 3 30 30 H 1.08997 * 109.47761 * 59.99841 * 1 2 3 31 31 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99601 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47247 * 270.00097 * 13 12 2 34 34 H 1.09005 * 109.46794 * 30.00043 * 13 12 2 35 35 H 1.08998 * 109.47246 * 150.00145 * 13 12 2 36 36 H 0.97001 * 120.00224 * 245.00182 * 17 14 12 37 37 H 1.08996 * 109.47409 * 300.00056 * 20 18 17 38 38 H 1.09006 * 109.46787 * 60.00195 * 20 18 17 39 39 H 1.09005 * 109.47504 * 179.97438 * 20 18 17 40 40 H 1.08997 * 110.23285 * 136.24904 * 26 25 24 41 41 H 1.08998 * 110.23477 * 258.12485 * 26 25 24 42 42 H 1.09001 * 110.95858 * 92.50313 * 27 26 25 43 43 H 1.08991 * 110.95853 * 216.21147 * 27 26 25 44 44 H 1.08997 * 110.47437 * 282.14605 * 28 24 23 45 45 H 1.08996 * 110.47392 * 44.76070 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3427 -2.1614 -4.4119 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7580 -3.7123 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1829 1.5749 16 8 3.7119 -0.8791 2.9814 17 7 1.9608 0.8089 3.3998 18 6 1.1466 -0.0354 4.2776 19 1 0.9851 -1.0035 3.8032 20 6 1.8720 -0.2350 5.6098 21 6 -0.1824 0.6309 4.5241 22 7 -0.3755 1.8883 4.8154 23 7 -1.6336 2.1111 4.9585 24 6 -2.3005 1.0043 4.7637 25 7 -1.4006 0.0365 4.4799 26 6 -2.0643 -1.2514 4.2441 27 6 -3.5474 -0.9108 3.9801 28 6 -3.7009 0.4310 4.7373 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7087 1.1615 -3.4843 33 1 0.7376 -2.1445 1.9993 34 1 1.5296 -2.5969 0.4706 35 1 2.4629 -2.5820 1.9862 36 1 1.9054 1.7749 3.4682 37 1 2.8332 -0.7170 5.4315 38 1 2.0333 0.7331 6.0842 39 1 1.2660 -0.8628 6.2631 40 1 -1.6306 -1.7453 3.3746 41 1 -1.9735 -1.8889 5.1235 42 1 -3.7351 -0.7867 2.9136 43 1 -4.2033 -1.6712 4.4037 44 1 -4.0651 0.2675 5.7515 45 1 -4.3736 1.0927 4.1917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331367606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:42 Heat of formation + Delta-G solvation = 16.663393 kcal Electronic energy + Delta-G solvation = -29949.711559 eV Core-core repulsion = 25938.113922 eV Total energy + Delta-G solvation = -4011.597636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.50228 -37.56997 -36.89861 -36.38701 -36.11141 -35.28731 -32.64265 -32.36279 -30.17752 -29.40468 -29.18567 -27.71641 -25.62959 -25.22743 -24.02760 -22.75684 -21.29292 -20.86779 -20.63914 -18.87729 -17.61809 -17.21067 -17.01239 -16.82513 -16.15193 -15.88491 -15.18037 -14.91573 -14.55697 -14.27970 -13.95513 -13.77176 -13.61684 -13.50009 -13.40458 -13.36046 -12.73268 -12.46450 -12.09676 -12.05882 -11.93470 -11.81829 -11.76248 -11.51896 -11.46677 -11.41182 -11.32570 -11.27201 -10.98235 -10.86910 -10.55502 -10.40792 -10.30416 -10.22900 -10.12214 -9.61035 -9.33787 -9.10817 -8.50256 -8.07566 -6.11328 -4.18698 1.08413 1.67426 2.25588 2.76366 3.24598 3.32563 3.35740 3.42069 3.46310 3.89554 3.99518 4.16629 4.28911 4.36107 4.39900 4.59223 4.82627 4.88009 4.97308 5.01903 5.15769 5.20269 5.27076 5.31643 5.40303 5.50320 5.57515 5.65508 5.75260 5.88073 5.98581 6.06526 6.15708 6.23865 6.55488 6.66734 6.69237 6.73003 6.96719 7.09208 7.40322 7.56291 7.72800 7.98861 8.21540 8.67299 8.83240 9.47251 10.94370 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.004325 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.154370 B = 6472.024745 C = 7712.436543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.989 5.989 13 C 0.095 3.905 14 S 2.777 3.223 15 O -0.966 6.966 16 O -0.992 6.992 17 N -1.120 6.120 18 C 0.251 3.749 19 H 0.094 0.906 20 C -0.164 4.164 21 C 0.196 3.804 22 N -0.274 5.274 23 N -0.279 5.279 24 C 0.154 3.846 25 N -0.488 5.488 26 C 0.098 3.902 27 C -0.129 4.129 28 C -0.039 4.039 29 H 0.005 0.995 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.029 0.971 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.422 0.578 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.300 -7.426 15.802 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.166 3.834 3 H 0.077 0.923 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.832 5.832 13 C -0.052 4.052 14 S 2.786 3.214 15 O -0.950 6.950 16 O -0.975 6.975 17 N -0.879 5.879 18 C 0.140 3.860 19 H 0.112 0.888 20 C -0.224 4.224 21 C -0.072 4.072 22 N -0.114 5.114 23 N -0.120 5.120 24 C -0.113 4.113 25 N -0.180 5.180 26 C -0.024 4.024 27 C -0.167 4.167 28 C -0.079 4.079 29 H 0.024 0.976 30 H 0.111 0.889 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.257 0.743 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.943 -6.057 15.907 19.227 hybrid contribution -0.525 -1.328 -1.217 1.877 sum -9.468 -7.385 14.689 18.973 Atomic orbital electron populations 1.22073 0.98368 0.99332 1.00423 1.18734 0.91163 0.93121 0.80387 0.92297 1.21307 1.31780 1.13096 0.89972 0.91847 1.24918 0.94925 0.94970 0.99040 1.69863 1.36385 1.22586 1.23868 0.86486 0.79279 0.79267 0.82323 1.20684 1.21074 1.19776 1.57718 1.69901 1.19691 1.35892 1.21338 0.98242 0.82730 1.02859 1.02095 0.73665 0.73288 0.72371 1.93634 1.74076 1.55844 1.71471 1.93534 1.68978 1.60605 1.74405 1.56378 1.60806 1.18180 1.52506 1.18738 0.82557 0.91823 0.92876 0.88773 1.22314 1.01583 1.03463 0.95038 1.24529 0.87364 0.90944 1.04354 1.74337 1.08439 1.10809 1.17816 1.73998 0.97749 1.20800 1.19436 1.25962 0.94686 0.86927 1.03755 1.47160 1.06587 1.12468 1.51784 1.22497 0.93254 0.82787 1.03909 1.22865 0.93855 0.97104 1.02881 1.20698 0.88636 0.95675 1.02841 0.97587 0.88898 0.95069 0.92628 0.95265 0.89513 0.91610 0.74338 0.89573 0.90864 0.91811 0.88136 0.88578 0.88780 0.87729 0.88084 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.97 37.15 0.33 -2.87 16 2 C 0.27 6.51 2.62 -69.08 -0.18 6.33 16 3 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 4 C -0.52 -13.78 7.99 -34.44 -0.28 -14.06 16 5 H 0.06 1.65 7.33 -52.49 -0.38 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.99 -19.86 3.12 -115.86 -0.36 -20.22 16 13 C 0.09 1.55 9.06 59.84 0.54 2.09 16 14 S 2.78 54.02 6.04 -107.50 -0.65 53.37 16 15 O -0.97 -22.83 16.70 -57.17 -0.95 -23.78 16 16 O -0.99 -19.41 16.04 -57.17 -0.92 -20.33 16 17 N -1.12 -17.97 5.52 -5.88 -0.03 -18.00 16 18 C 0.25 3.41 3.35 -69.09 -0.23 3.17 16 19 H 0.09 1.15 6.59 -51.92 -0.34 0.81 16 20 C -0.16 -1.91 9.50 37.16 0.35 -1.55 16 21 C 0.20 2.82 7.12 -154.89 -1.10 1.72 16 22 N -0.27 -4.62 11.98 32.82 0.39 -4.23 16 23 N -0.28 -4.58 12.22 32.93 0.40 -4.18 16 24 C 0.15 1.93 8.69 -154.84 -1.35 0.59 16 25 N -0.49 -5.75 3.62 -109.38 -0.40 -6.15 16 26 C 0.10 0.68 7.77 -3.13 -0.02 0.65 16 27 C -0.13 -0.63 7.19 -25.01 -0.18 -0.81 16 28 C -0.04 -0.26 6.86 -26.60 -0.18 -0.45 16 29 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 31 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.03 0.38 7.40 -51.93 -0.38 0.00 16 34 H 0.09 1.49 7.02 -51.93 -0.36 1.13 16 35 H 0.07 0.99 7.02 -51.93 -0.36 0.63 16 36 H 0.42 6.73 8.64 -34.47 -0.30 6.43 16 37 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -35.77 375.73 -10.18 -45.95 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.55 Total: 3.70 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.39 Total: -3.56 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: 0.63 Total: -76.83 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.87 Total: -44.11 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 54.02 SS G_CDS: -0.65 Total: 53.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.77 -10.18 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331367606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.615 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds