Wall clock time and date at job start Wed Apr 1 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 C 1.50699 * 109.47102 * 240.00221 * 2 1 3 5 5 H 1.08001 * 120.00121 * 239.99632 * 4 2 1 6 6 C 1.37883 * 119.99804 * 60.00162 * 4 2 1 7 7 N 1.31511 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99773 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47201 * 89.99674 * 8 6 4 10 10 H 1.48500 * 109.46733 * 209.99897 * 8 6 4 11 11 H 1.48499 * 109.46932 * 329.99364 * 8 6 4 12 12 N 1.46505 * 109.47228 * 120.00492 * 2 1 3 13 13 C 1.46494 * 120.00309 * 59.99976 * 12 2 1 14 14 S 1.65605 * 119.99527 * 239.99942 * 12 2 1 15 15 O 1.42096 * 106.40590 * 336.45948 * 14 12 2 16 16 O 1.42108 * 106.39755 * 203.53861 * 14 12 2 17 17 N 1.65597 * 107.21939 * 90.00151 * 14 12 2 18 18 C 1.46499 * 119.99926 * 64.71969 * 17 14 12 19 19 H 1.09008 * 109.47522 * 335.27388 * 18 17 14 20 20 C 1.52996 * 109.47213 * 95.27634 * 18 17 14 21 21 C 1.50697 * 109.47249 * 215.27890 * 18 17 14 22 22 N 1.30510 * 126.37162 * 315.02351 * 21 18 17 23 23 N 1.28567 * 109.66918 * 179.97438 * 22 21 18 24 24 C 1.30676 * 109.63509 * 359.95664 * 23 22 21 25 25 N 1.35166 * 107.33461 * 359.87553 * 24 23 22 26 26 C 1.46794 * 111.15283 * 180.02562 * 25 24 23 27 27 C 1.54436 * 105.55595 * 17.22923 * 26 25 24 28 28 C 1.51347 * 142.71621 * 180.25708 * 24 23 22 29 29 H 1.09002 * 109.47103 * 299.99110 * 1 2 3 30 30 H 1.08997 * 109.47761 * 59.99841 * 1 2 3 31 31 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99601 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47247 * 270.00097 * 13 12 2 34 34 H 1.09005 * 109.46794 * 30.00043 * 13 12 2 35 35 H 1.08998 * 109.47246 * 150.00145 * 13 12 2 36 36 H 0.97001 * 120.00224 * 245.00182 * 17 14 12 37 37 H 1.08996 * 109.47409 * 300.00056 * 20 18 17 38 38 H 1.09006 * 109.46787 * 60.00195 * 20 18 17 39 39 H 1.09005 * 109.47504 * 179.97438 * 20 18 17 40 40 H 1.08997 * 110.23285 * 136.24904 * 26 25 24 41 41 H 1.08998 * 110.23477 * 258.12485 * 26 25 24 42 42 H 1.09001 * 110.95858 * 92.50313 * 27 26 25 43 43 H 1.08991 * 110.95853 * 216.21147 * 27 26 25 44 44 H 1.08997 * 110.47437 * 282.14605 * 28 24 23 45 45 H 1.08996 * 110.47392 * 44.76070 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3427 -2.1614 -4.4119 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7580 -3.7123 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1829 1.5749 16 8 3.7119 -0.8791 2.9814 17 7 1.9608 0.8089 3.3998 18 6 1.1466 -0.0354 4.2776 19 1 0.9851 -1.0035 3.8032 20 6 1.8720 -0.2350 5.6098 21 6 -0.1824 0.6309 4.5241 22 7 -0.3755 1.8883 4.8154 23 7 -1.6336 2.1111 4.9585 24 6 -2.3005 1.0043 4.7637 25 7 -1.4006 0.0365 4.4799 26 6 -2.0643 -1.2514 4.2441 27 6 -3.5474 -0.9108 3.9801 28 6 -3.7009 0.4310 4.7373 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7087 1.1615 -3.4843 33 1 0.7376 -2.1445 1.9993 34 1 1.5296 -2.5969 0.4706 35 1 2.4629 -2.5820 1.9862 36 1 1.9054 1.7749 3.4682 37 1 2.8332 -0.7170 5.4315 38 1 2.0333 0.7331 6.0842 39 1 1.2660 -0.8628 6.2631 40 1 -1.6306 -1.7453 3.3746 41 1 -1.9735 -1.8889 5.1235 42 1 -3.7351 -0.7867 2.9136 43 1 -4.2033 -1.6712 4.4037 44 1 -4.0651 0.2675 5.7515 45 1 -4.3736 1.0927 4.1917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331367606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:42 Heat of formation + Delta-G solvation = -9.665783 kcal Electronic energy + Delta-G solvation = -29950.853277 eV Core-core repulsion = 25938.113922 eV Total energy + Delta-G solvation = -4012.739355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.44142 -38.52621 -38.24934 -37.99852 -37.42406 -36.95367 -34.56239 -33.22657 -31.18198 -30.99200 -30.29616 -28.44598 -27.29653 -27.04139 -25.04840 -23.36198 -22.72169 -22.12414 -21.56154 -20.34565 -19.03476 -18.65796 -18.36963 -17.94813 -17.69496 -17.10209 -16.75476 -16.13805 -15.64709 -15.38123 -15.18438 -15.00309 -14.87118 -14.58744 -14.25659 -14.24709 -14.02313 -13.84708 -13.58619 -13.50417 -13.24782 -13.20049 -13.04965 -12.83360 -12.72159 -12.69716 -12.63730 -12.47740 -12.44498 -12.28728 -12.17921 -12.16564 -11.97153 -11.40260 -11.23633 -11.01048 -10.86354 -10.53017 -10.12956 -9.72598 -8.13935 -6.28410 -0.45130 0.72639 1.41438 1.44330 1.45373 1.53869 1.71020 2.00895 2.40766 2.49808 2.74907 3.14632 3.15242 3.36197 3.46146 3.53713 3.84739 3.95205 3.98944 4.05475 4.27231 4.38443 4.47192 4.54465 4.67233 4.69352 4.71029 4.81232 4.85317 4.88237 4.92158 4.98964 5.03853 5.10705 5.13580 5.18552 5.22291 5.24337 5.56959 5.58351 5.78800 5.84786 5.87841 6.09836 6.24574 6.79819 7.41146 7.65820 8.90597 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.004325 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.154370 B = 6472.024745 C = 7712.436543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.275 3.725 3 H 0.016 0.984 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.266 1.266 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.995 5.995 13 C 0.086 3.914 14 S 2.795 3.205 15 O -1.015 7.015 16 O -0.992 6.992 17 N -1.114 6.114 18 C 0.246 3.754 19 H 0.112 0.888 20 C -0.159 4.159 21 C 0.186 3.814 22 N -0.314 5.314 23 N -0.335 5.335 24 C 0.157 3.843 25 N -0.487 5.487 26 C 0.082 3.918 27 C -0.116 4.116 28 C -0.038 4.038 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.421 0.579 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.145 0.855 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.112 -10.541 16.761 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.170 3.830 3 H 0.034 0.966 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.784 3.216 9 H -0.191 1.191 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.837 5.837 13 C -0.059 4.059 14 S 2.804 3.196 15 O -0.999 6.999 16 O -0.975 6.975 17 N -0.875 5.875 18 C 0.136 3.864 19 H 0.130 0.870 20 C -0.219 4.219 21 C -0.083 4.083 22 N -0.154 5.154 23 N -0.175 5.175 24 C -0.112 4.112 25 N -0.178 5.178 26 C -0.037 4.037 27 C -0.154 4.154 28 C -0.078 4.078 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.256 0.744 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.145 0.855 42 H 0.105 0.895 43 H 0.163 0.837 44 H 0.146 0.854 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.768 -9.221 16.880 22.044 hybrid contribution -0.014 -0.388 -1.423 1.475 sum -10.782 -9.609 15.457 21.155 Atomic orbital electron populations 1.21808 0.96954 1.00130 0.99438 1.18357 0.92047 0.91160 0.81393 0.96610 1.21628 1.31692 1.13145 0.91085 0.91872 1.25686 0.95154 0.95635 1.01862 1.69999 1.37393 1.23799 1.24389 0.85551 0.78918 0.78353 0.78788 1.19145 1.21330 1.19718 1.57561 1.69911 1.21280 1.34990 1.21614 1.00648 0.80386 1.03251 1.01354 0.73587 0.72459 0.72184 1.93566 1.75710 1.57655 1.73001 1.93525 1.69259 1.60520 1.74220 1.56074 1.60972 1.18345 1.52063 1.19053 0.82212 0.91746 0.93368 0.86992 1.22284 1.01646 1.03605 0.94369 1.24504 0.88450 0.90771 1.04617 1.74207 1.09316 1.12636 1.19282 1.73858 0.98092 1.23339 1.22185 1.26962 0.97040 0.86086 1.01115 1.47479 1.05527 1.14055 1.50784 1.23042 0.93974 0.81120 1.05598 1.22945 0.93101 0.96804 1.02542 1.21057 0.85403 0.96408 1.04918 0.96564 0.91780 0.93172 0.92677 0.91444 0.90397 0.90195 0.74384 0.89888 0.91625 0.89097 0.87742 0.85491 0.89472 0.83660 0.85385 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.97 71.98 0.65 -4.88 16 2 C 0.27 13.48 2.62 44.24 0.12 13.59 16 3 H 0.02 0.92 6.91 -2.39 -0.02 0.91 16 4 C -0.54 -28.44 7.99 25.60 0.20 -28.24 16 5 H 0.06 3.27 7.33 -2.91 -0.02 3.25 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -51.79 11.32 21.45 0.24 -51.55 16 8 Si 0.96 42.62 29.54 68.60 2.03 44.64 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -1.00 -39.38 3.12 -520.46 -1.62 -41.01 16 13 C 0.09 2.60 9.06 127.77 1.16 3.76 16 14 S 2.80 109.18 6.04 -56.49 -0.34 108.84 16 15 O -1.02 -49.85 16.70 -128.00 -2.14 -51.99 16 16 O -0.99 -37.85 16.04 -128.00 -2.05 -39.90 16 17 N -1.11 -35.86 5.52 -172.53 -0.95 -36.81 16 18 C 0.25 6.34 3.35 44.24 0.15 6.48 16 19 H 0.11 2.42 6.59 -2.38 -0.02 2.40 16 20 C -0.16 -3.44 9.50 71.98 0.68 -2.76 16 21 C 0.19 5.20 7.12 137.94 0.98 6.19 16 22 N -0.31 -10.82 11.98 -50.09 -0.60 -11.42 16 23 N -0.33 -11.12 12.22 -49.74 -0.61 -11.73 16 24 C 0.16 3.71 8.69 138.24 1.20 4.91 16 25 N -0.49 -10.42 3.62 -499.98 -1.81 -12.23 16 26 C 0.08 0.81 7.77 86.81 0.67 1.48 16 27 C -0.12 -0.62 7.19 31.71 0.23 -0.40 16 28 C -0.04 -0.40 6.86 30.68 0.21 -0.19 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 31 H 0.05 1.99 7.67 -2.39 -0.02 1.98 16 32 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.07 1.51 7.40 -2.39 -0.02 1.50 16 34 H 0.08 2.52 7.02 -2.38 -0.02 2.50 16 35 H 0.08 2.19 7.02 -2.39 -0.02 2.18 16 36 H 0.42 14.00 8.64 -96.74 -0.84 13.17 16 37 H 0.08 1.85 7.67 -2.39 -0.02 1.83 16 38 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -81.36 375.73 -0.97 -82.33 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.18 Total: 19.54 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 6.70 Total: 1.29 kcal Atomic # 7 Polarization: -159.40 SS G_CDS: -5.35 Total: -164.76 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: -4.19 Total: -91.89 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 109.18 SS G_CDS: -0.34 Total: 108.84 kcal Total: -81.36 -0.97 -82.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331367606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.664 kcal (2) G-P(sol) polarization free energy of solvation -81.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds