Wall clock time and date at job start Wed Apr 1 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 C 1.53001 * 109.47061 * 240.00139 * 2 1 3 5 5 N 1.46501 * 109.47203 * 294.58804 * 4 2 1 6 6 N 1.39929 * 125.75671 * 96.01191 * 5 4 2 7 7 C 1.30456 * 108.89773 * 179.85008 * 6 5 4 8 8 C 1.41297 * 108.01617 * 0.40648 * 7 6 5 9 9 C 1.47432 * 126.40961 * 179.70646 * 8 7 6 10 10 O 1.21604 * 119.99937 * 180.02562 * 9 8 7 11 11 N 1.34784 * 119.99794 * 0.04347 * 9 8 7 12 12 C 1.47059 * 136.06142 * 359.62507 * 11 9 8 13 13 C 1.53228 * 88.08661 * 207.20770 * 12 11 9 14 14 O 1.42904 * 114.19916 * 87.72725 * 13 12 11 15 15 C 1.50700 * 114.32902 * 220.47381 * 13 12 11 16 16 H 1.07995 * 120.00273 * 93.75578 * 15 13 12 17 17 C 1.37881 * 119.99766 * 273.75760 * 15 13 12 18 18 N 1.31512 * 119.99981 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00114 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46966 * 59.99619 * 19 17 15 21 21 H 1.48503 * 109.47304 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46979 * 300.00013 * 19 17 15 23 23 C 1.47068 * 136.05379 * 180.02562 * 11 9 8 24 24 C 1.34261 * 125.74878 * 276.31938 * 5 4 2 25 25 C 1.50697 * 126.29363 * 359.95943 * 24 5 4 26 26 F 1.39905 * 109.47220 * 220.33982 * 25 24 5 27 27 F 1.39900 * 109.47394 * 340.33647 * 25 24 5 28 28 H 1.08993 * 109.47473 * 55.49864 * 1 2 3 29 29 H 1.08999 * 109.46625 * 175.50688 * 1 2 3 30 30 H 1.08999 * 109.46671 * 295.49651 * 1 2 3 31 31 H 1.08996 * 109.47447 * 120.00143 * 2 1 3 32 32 H 1.09001 * 109.47274 * 60.00069 * 3 2 1 33 33 H 1.08998 * 109.47405 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47481 * 300.00301 * 3 2 1 35 35 H 1.09005 * 109.47136 * 54.58495 * 4 2 1 36 36 H 1.08996 * 109.47161 * 174.58507 * 4 2 1 37 37 H 1.07996 * 125.98975 * 180.11292 * 7 6 5 38 38 H 1.09002 * 113.46752 * 321.94628 * 12 11 9 39 39 H 1.09002 * 113.46778 * 92.37325 * 12 11 9 40 40 H 0.96696 * 113.99557 * 86.30764 * 14 13 12 41 41 H 0.97005 * 120.00075 * 180.02562 * 18 17 15 42 42 H 1.09003 * 113.46067 * 267.61899 * 23 11 9 43 43 H 1.08999 * 113.46886 * 37.99847 * 23 11 9 44 44 H 1.08996 * 109.47611 * 100.33930 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6609 -2.1349 -1.1860 6 7 0.5341 -2.7070 -1.7868 7 6 0.5177 -3.9847 -1.5236 8 6 1.6451 -4.2808 -0.7248 9 6 2.0164 -5.6041 -0.1915 10 8 3.0177 -5.7269 0.4876 11 7 1.2463 -6.6780 -0.4570 12 6 0.0043 -6.9322 -1.2022 13 6 -0.2534 -8.1185 -0.2672 14 8 -0.9567 -7.7790 0.9296 15 6 -0.8024 -9.3424 -0.9540 16 1 -0.1314 -10.1167 -1.2954 17 6 -2.1614 -9.4736 -1.1464 18 7 -2.9785 -8.5309 -0.7302 19 14 -2.8419 -10.9904 -1.9983 20 1 -2.4706 -12.2017 -1.2236 21 1 -4.3212 -10.8895 -2.0816 22 1 -2.2749 -11.0854 -3.3675 23 6 1.2745 -8.1099 -0.1228 24 6 2.3331 -3.0990 -0.5368 25 6 3.6051 -2.9232 0.2519 26 9 4.4578 -4.0054 0.0089 27 9 4.2352 -1.7364 -0.1376 28 1 -0.3634 0.5820 -0.8468 29 1 -0.3632 -1.0245 -0.0805 30 1 -0.3633 0.4424 0.9276 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.5996 -0.2664 -2.1366 36 1 3.1256 -0.6380 -1.2991 37 1 -0.2293 -4.6912 -1.8539 38 1 -0.7324 -6.1350 -1.1029 39 1 0.1722 -7.2247 -2.2387 40 1 -1.9190 -7.7854 0.8354 41 1 -3.9346 -8.6234 -0.8653 42 1 1.7845 -8.7196 -0.8687 43 1 1.6166 -8.3121 0.8922 44 1 3.3700 -2.8777 1.3153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331622944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:05 Heat of formation + Delta-G solvation = -66.227456 kcal Electronic energy + Delta-G solvation = -31278.280733 eV Core-core repulsion = 26676.955542 eV Total energy + Delta-G solvation = -4601.325191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.16073 -47.07453 -41.50283 -39.38519 -37.26944 -36.65056 -34.01967 -32.47700 -32.18965 -31.25209 -28.96462 -27.49050 -26.96223 -26.06845 -25.27392 -25.03338 -22.26610 -21.29517 -20.39609 -19.93750 -18.71409 -17.71601 -17.58392 -17.21483 -16.92276 -16.30807 -15.81416 -15.42147 -15.32900 -15.06735 -14.92400 -14.61590 -14.29122 -13.98325 -13.76427 -13.64189 -13.40984 -13.21911 -13.09533 -12.73672 -12.59277 -12.55177 -12.36331 -12.26387 -11.92691 -11.63192 -11.57742 -11.55145 -11.29008 -11.16255 -11.05394 -10.98059 -10.85398 -10.48827 -10.25623 -9.63870 -9.60383 -9.20107 -8.77902 -8.73745 -8.37585 -7.80244 -6.40837 -4.51048 1.24538 2.08694 2.27562 3.16306 3.22363 3.24479 3.36644 3.55982 3.83984 3.92442 4.17444 4.20263 4.36736 4.52825 4.60482 4.73940 4.76250 4.82494 5.04047 5.08959 5.18124 5.27369 5.31443 5.37880 5.49562 5.54762 5.59784 5.65966 5.72530 5.87663 5.91599 6.03735 6.19896 6.35680 6.42276 6.49683 6.59108 6.64998 6.72566 7.10962 7.44601 7.62551 7.80175 8.50108 8.54113 8.81677 9.20373 9.48959 10.65714 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.003049 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.923892 B = 9181.998359 C =10209.351133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.336 5.336 6 N -0.278 5.278 7 C 0.079 3.921 8 C -0.228 4.228 9 C 0.605 3.395 10 O -0.555 6.555 11 N -0.627 5.627 12 C 0.067 3.933 13 C 0.241 3.759 14 O -0.571 6.571 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.909 3.091 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.111 3.889 24 C 0.052 3.948 25 C 0.347 3.653 26 F -0.159 7.159 27 F -0.203 7.203 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.202 0.798 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.394 0.606 41 H 0.274 0.726 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.920 16.720 -0.706 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.201 4.201 4 C -0.005 4.005 5 N -0.116 5.116 6 N -0.098 5.098 7 C -0.107 4.107 8 C -0.243 4.243 9 C 0.395 3.605 10 O -0.436 6.436 11 N -0.360 5.360 12 C -0.056 4.056 13 C 0.199 3.801 14 O -0.384 6.384 15 C -0.572 4.572 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.011 4.011 24 C -0.081 4.081 25 C 0.291 3.709 26 F -0.139 7.139 27 F -0.184 7.184 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.219 0.781 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.250 0.750 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.428 18.053 -0.701 19.534 hybrid contribution -0.657 -1.341 -0.531 1.584 sum 6.771 16.713 -1.232 18.074 Atomic orbital electron populations 1.21850 0.93916 1.02925 1.01903 1.21524 0.97444 0.96855 0.97302 1.21758 1.01320 0.94443 1.02583 1.22372 1.02428 0.75099 1.00603 1.48420 1.18100 1.07622 1.37475 1.77257 1.03478 1.09717 1.19327 1.24605 0.97360 0.93095 0.95596 1.20134 1.00005 0.93762 1.10436 1.16592 0.81744 0.81792 0.80379 1.90769 1.26103 1.85523 1.41177 1.49393 1.26597 1.08046 1.51924 1.24298 0.83080 1.00137 0.98111 1.19469 0.87277 0.90433 0.82920 1.86054 1.26211 1.91956 1.34166 1.21396 0.92593 1.04979 1.38200 0.90947 1.25069 0.96717 0.96728 0.94486 1.69250 1.04462 1.33316 1.46839 0.86371 0.77716 0.82400 0.79937 1.19842 1.21021 1.19877 1.23319 0.98413 0.78800 1.00538 1.21781 0.96613 0.90314 0.99392 1.19663 0.80897 0.71810 0.98499 1.93173 1.70900 1.54006 1.95871 1.92895 1.84239 1.48100 1.93153 0.92285 0.91927 0.92434 0.90756 0.91776 0.92085 0.92165 0.88024 0.87094 0.78136 0.91541 0.89864 0.74994 0.91514 0.89636 0.91421 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.14 37.16 0.34 -1.07 16 2 C -0.11 -0.95 3.12 -90.62 -0.28 -1.23 16 3 C -0.14 -0.88 9.19 37.16 0.34 -0.54 16 4 C 0.12 1.12 5.20 -4.04 -0.02 1.10 16 5 N -0.34 -4.54 3.09 -56.61 -0.17 -4.72 16 6 N -0.28 -4.26 11.81 30.86 0.36 -3.89 16 7 C 0.08 1.30 11.14 -16.97 -0.19 1.11 16 8 C -0.23 -4.04 6.09 -105.06 -0.64 -4.68 16 9 C 0.61 12.55 8.02 -12.51 -0.10 12.45 16 10 O -0.56 -12.49 14.48 5.27 0.08 -12.42 16 11 N -0.63 -13.16 3.69 -186.70 -0.69 -13.85 16 12 C 0.07 1.38 6.51 -8.66 -0.06 1.32 16 13 C 0.24 5.62 1.57 -91.41 -0.14 5.47 16 14 O -0.57 -14.41 13.54 -35.23 -0.48 -14.89 16 15 C -0.53 -12.98 8.69 -34.44 -0.30 -13.28 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 18 N -0.90 -22.13 11.01 55.43 0.61 -21.52 16 19 Si 0.91 19.04 29.54 -169.99 -5.02 14.02 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C 0.11 2.39 8.03 -8.53 -0.07 2.32 16 24 C 0.05 0.79 6.73 -81.60 -0.55 0.24 16 25 C 0.35 4.62 5.35 36.00 0.19 4.81 16 26 F -0.16 -2.67 14.40 2.25 0.03 -2.64 16 27 F -0.20 -2.29 14.25 2.25 0.03 -2.26 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.76 7.03 -51.93 -0.36 0.40 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 0.98 5.72 -51.93 -0.30 0.69 16 37 H 0.20 3.16 5.22 -52.49 -0.27 2.89 16 38 H 0.07 1.34 6.16 -51.93 -0.32 1.02 16 39 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 40 H 0.39 10.04 6.32 45.56 0.29 10.32 16 41 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 42 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -28.76 367.36 -6.44 -35.20 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.16 Total: 11.74 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -1.57 Total: 9.69 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.11 Total: -43.98 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.40 Total: -27.31 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.06 Total: -4.90 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.76 -6.44 -35.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331622944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.025 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds