Wall clock time and date at job start Wed Apr 1 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 C 1.53001 * 109.47061 * 240.00139 * 2 1 3 5 5 N 1.46501 * 109.47203 * 294.58804 * 4 2 1 6 6 N 1.39929 * 125.75671 * 96.01191 * 5 4 2 7 7 C 1.30456 * 108.89773 * 179.85008 * 6 5 4 8 8 C 1.41297 * 108.01617 * 0.40648 * 7 6 5 9 9 C 1.47432 * 126.40961 * 179.70646 * 8 7 6 10 10 O 1.21604 * 119.99937 * 180.02562 * 9 8 7 11 11 N 1.34784 * 119.99794 * 0.04347 * 9 8 7 12 12 C 1.47059 * 136.06142 * 359.62507 * 11 9 8 13 13 C 1.53228 * 88.08661 * 207.20770 * 12 11 9 14 14 O 1.42904 * 114.19916 * 87.72725 * 13 12 11 15 15 C 1.50700 * 114.32902 * 220.47381 * 13 12 11 16 16 H 1.07995 * 120.00273 * 93.75578 * 15 13 12 17 17 C 1.37881 * 119.99766 * 273.75760 * 15 13 12 18 18 N 1.31512 * 119.99981 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00114 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46966 * 59.99619 * 19 17 15 21 21 H 1.48503 * 109.47304 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46979 * 300.00013 * 19 17 15 23 23 C 1.47068 * 136.05379 * 180.02562 * 11 9 8 24 24 C 1.34261 * 125.74878 * 276.31938 * 5 4 2 25 25 C 1.50697 * 126.29363 * 359.95943 * 24 5 4 26 26 F 1.39905 * 109.47220 * 220.33982 * 25 24 5 27 27 F 1.39900 * 109.47394 * 340.33647 * 25 24 5 28 28 H 1.08993 * 109.47473 * 55.49864 * 1 2 3 29 29 H 1.08999 * 109.46625 * 175.50688 * 1 2 3 30 30 H 1.08999 * 109.46671 * 295.49651 * 1 2 3 31 31 H 1.08996 * 109.47447 * 120.00143 * 2 1 3 32 32 H 1.09001 * 109.47274 * 60.00069 * 3 2 1 33 33 H 1.08998 * 109.47405 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47481 * 300.00301 * 3 2 1 35 35 H 1.09005 * 109.47136 * 54.58495 * 4 2 1 36 36 H 1.08996 * 109.47161 * 174.58507 * 4 2 1 37 37 H 1.07996 * 125.98975 * 180.11292 * 7 6 5 38 38 H 1.09002 * 113.46752 * 321.94628 * 12 11 9 39 39 H 1.09002 * 113.46778 * 92.37325 * 12 11 9 40 40 H 0.96696 * 113.99557 * 86.30764 * 14 13 12 41 41 H 0.97005 * 120.00075 * 180.02562 * 18 17 15 42 42 H 1.09003 * 113.46067 * 267.61899 * 23 11 9 43 43 H 1.08999 * 113.46886 * 37.99847 * 23 11 9 44 44 H 1.08996 * 109.47611 * 100.33930 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6609 -2.1349 -1.1860 6 7 0.5341 -2.7070 -1.7868 7 6 0.5177 -3.9847 -1.5236 8 6 1.6451 -4.2808 -0.7248 9 6 2.0164 -5.6041 -0.1915 10 8 3.0177 -5.7269 0.4876 11 7 1.2463 -6.6780 -0.4570 12 6 0.0043 -6.9322 -1.2022 13 6 -0.2534 -8.1185 -0.2672 14 8 -0.9567 -7.7790 0.9296 15 6 -0.8024 -9.3424 -0.9540 16 1 -0.1314 -10.1167 -1.2954 17 6 -2.1614 -9.4736 -1.1464 18 7 -2.9785 -8.5309 -0.7302 19 14 -2.8419 -10.9904 -1.9983 20 1 -2.4706 -12.2017 -1.2236 21 1 -4.3212 -10.8895 -2.0816 22 1 -2.2749 -11.0854 -3.3675 23 6 1.2745 -8.1099 -0.1228 24 6 2.3331 -3.0990 -0.5368 25 6 3.6051 -2.9232 0.2519 26 9 4.4578 -4.0054 0.0089 27 9 4.2352 -1.7364 -0.1376 28 1 -0.3634 0.5820 -0.8468 29 1 -0.3632 -1.0245 -0.0805 30 1 -0.3633 0.4424 0.9276 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.5996 -0.2664 -2.1366 36 1 3.1256 -0.6380 -1.2991 37 1 -0.2293 -4.6912 -1.8539 38 1 -0.7324 -6.1350 -1.1029 39 1 0.1722 -7.2247 -2.2387 40 1 -1.9190 -7.7854 0.8354 41 1 -3.9346 -8.6234 -0.8653 42 1 1.7845 -8.7196 -0.8687 43 1 1.6166 -8.3121 0.8922 44 1 3.3700 -2.8777 1.3153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331622944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:04 Heat of formation + Delta-G solvation = -84.584427 kcal Electronic energy + Delta-G solvation = -31279.076751 eV Core-core repulsion = 26676.955542 eV Total energy + Delta-G solvation = -4602.121209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.22351 -48.19385 -42.72078 -41.04439 -38.89338 -37.49167 -35.85631 -34.08502 -33.55235 -32.48515 -30.54632 -28.32921 -28.07677 -27.18387 -26.90486 -26.59592 -23.64926 -22.32902 -21.65254 -21.14517 -20.21094 -19.37514 -18.71968 -18.48141 -18.16952 -17.72342 -17.13408 -16.84988 -16.53749 -16.30662 -16.26291 -16.12679 -15.84003 -15.11316 -14.97398 -14.91221 -14.55710 -14.48594 -14.30653 -14.10067 -13.88630 -13.83524 -13.63129 -13.36400 -13.16647 -12.95538 -12.81873 -12.72780 -12.64317 -12.40924 -12.19971 -12.13197 -12.10912 -11.95466 -11.75740 -11.35088 -10.91911 -10.73159 -10.61388 -10.18793 -10.01747 -9.47012 -8.24165 -6.40660 0.00958 0.94639 1.01143 1.50958 1.53073 1.60061 1.97525 2.27020 2.33026 2.44173 2.89028 2.98082 3.16643 3.42416 3.60247 3.64698 3.73392 3.79835 3.85949 4.02149 4.07096 4.15630 4.28880 4.37252 4.45934 4.54679 4.58267 4.69039 4.75259 4.81956 4.86490 4.91280 4.97794 4.99783 5.12166 5.19140 5.28597 5.28856 5.32477 5.55052 5.76375 5.94851 6.22721 6.64848 6.88740 7.19227 7.33315 7.53228 8.81597 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.003049 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.923892 B = 9181.998359 C =10209.351133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.138 4.138 4 C 0.105 3.895 5 N -0.321 5.321 6 N -0.282 5.282 7 C 0.076 3.924 8 C -0.261 4.261 9 C 0.601 3.399 10 O -0.579 6.579 11 N -0.631 5.631 12 C 0.082 3.918 13 C 0.221 3.779 14 O -0.585 6.585 15 C -0.551 4.551 16 H 0.075 0.925 17 C 0.034 3.966 18 N -0.916 5.916 19 Si 0.968 3.032 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.268 1.268 23 C 0.112 3.888 24 C 0.062 3.938 25 C 0.348 3.652 26 F -0.180 7.180 27 F -0.188 7.188 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.202 0.798 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.389 0.611 41 H 0.276 0.724 42 H 0.103 0.897 43 H 0.056 0.944 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 18.378 -1.431 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.196 4.196 4 C -0.013 4.013 5 N -0.100 5.100 6 N -0.102 5.102 7 C -0.110 4.110 8 C -0.276 4.276 9 C 0.393 3.607 10 O -0.461 6.461 11 N -0.363 5.363 12 C -0.041 4.041 13 C 0.180 3.820 14 O -0.398 6.398 15 C -0.589 4.589 16 H 0.093 0.907 17 C -0.167 4.167 18 N -0.557 5.557 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.193 1.193 23 C -0.010 4.010 24 C -0.074 4.074 25 C 0.293 3.707 26 F -0.161 7.161 27 F -0.169 7.169 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.218 0.782 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.245 0.755 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.074 0.926 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.856 19.745 -1.441 21.299 hybrid contribution -0.763 -1.731 -0.278 1.912 sum 7.093 18.014 -1.719 19.436 Atomic orbital electron populations 1.21836 0.94761 1.01118 1.02748 1.21521 0.96623 0.98268 0.96259 1.21733 1.01878 0.92522 1.03422 1.22818 1.03469 0.73009 1.02038 1.48780 1.16914 1.08686 1.35651 1.77229 1.04271 1.09165 1.19567 1.24560 0.97179 0.93557 0.95665 1.19952 1.01737 0.93215 1.12709 1.17015 0.81288 0.82562 0.79881 1.90740 1.27049 1.86022 1.42290 1.49407 1.26822 1.07967 1.52138 1.24088 0.82971 0.98997 0.97998 1.19725 0.87924 0.91443 0.82942 1.86038 1.25997 1.92188 1.35617 1.21625 0.93133 1.05556 1.38606 0.90711 1.25732 0.96905 0.99034 0.95007 1.69315 1.04633 1.34454 1.47275 0.85441 0.76945 0.79180 0.79064 1.20045 1.20925 1.19252 1.23320 0.97425 0.79788 1.00499 1.22014 0.96864 0.89871 0.98615 1.19888 0.79794 0.71571 0.99478 1.93129 1.71511 1.55395 1.96047 1.92918 1.83870 1.46962 1.93165 0.91494 0.94962 0.91619 0.91195 0.91112 0.91162 0.91224 0.86639 0.85716 0.78176 0.91409 0.88737 0.75515 0.91381 0.87903 0.92573 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.14 71.98 0.66 -1.88 16 2 C -0.11 -1.55 3.12 -10.79 -0.03 -1.58 16 3 C -0.14 -1.24 9.19 71.98 0.66 -0.58 16 4 C 0.11 1.77 5.20 86.38 0.45 2.22 16 5 N -0.32 -8.18 3.09 -333.00 -1.03 -9.21 16 6 N -0.28 -8.41 11.81 -56.27 -0.66 -9.07 16 7 C 0.08 2.48 11.14 85.65 0.95 3.43 16 8 C -0.26 -9.21 6.09 -20.15 -0.12 -9.34 16 9 C 0.60 25.16 8.02 86.66 0.70 25.86 16 10 O -0.58 -26.28 14.48 -4.04 -0.06 -26.34 16 11 N -0.63 -26.76 3.69 -863.34 -3.19 -29.95 16 12 C 0.08 3.42 6.51 83.08 0.54 3.96 16 13 C 0.22 10.42 1.57 -11.30 -0.02 10.41 16 14 O -0.59 -30.24 13.54 -148.98 -2.02 -32.26 16 15 C -0.55 -26.83 8.69 25.60 0.22 -26.61 16 16 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 17 C 0.03 1.62 5.39 84.66 0.46 2.08 16 18 N -0.92 -45.25 11.01 21.45 0.24 -45.02 16 19 Si 0.97 38.65 29.54 68.60 2.03 40.68 16 20 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 C 0.11 4.87 8.03 83.17 0.67 5.54 16 24 C 0.06 1.81 6.73 42.14 0.28 2.09 16 25 C 0.35 8.72 5.35 71.23 0.38 9.10 16 26 F -0.18 -5.94 14.40 44.97 0.65 -5.29 16 27 F -0.19 -3.77 14.25 44.97 0.64 -3.13 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.03 0.75 7.03 -2.39 -0.02 0.73 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.13 1.81 5.72 -2.39 -0.01 1.80 16 37 H 0.20 6.38 5.22 -2.91 -0.02 6.37 16 38 H 0.07 2.78 6.16 -2.39 -0.01 2.76 16 39 H 0.09 3.68 8.10 -2.39 -0.02 3.66 16 40 H 0.39 20.35 6.32 -74.06 -0.47 19.88 16 41 H 0.28 12.99 8.31 -92.70 -0.77 12.22 16 42 H 0.10 4.04 8.10 -2.39 -0.02 4.02 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.16 3.16 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -61.42 367.36 2.98 -58.44 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.59 Total: 36.45 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: 5.80 Total: 24.69 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -4.65 Total: -93.25 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -2.08 Total: -58.60 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 1.29 Total: -8.42 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -61.42 2.98 -58.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331622944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.140 kcal (2) G-P(sol) polarization free energy of solvation -61.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds