Wall clock time and date at job start Wed Apr 1 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 S 1.65600 * 119.99915 * 240.00242 * 12 2 1 15 15 O 1.42101 * 106.39901 * 203.53726 * 14 12 2 16 16 O 1.42096 * 106.40513 * 336.45952 * 14 12 2 17 17 N 1.65595 * 107.21978 * 90.00190 * 14 12 2 18 18 C 1.46497 * 120.00400 * 64.99328 * 17 14 12 19 19 C 1.52996 * 109.47713 * 165.00175 * 18 17 14 20 20 N 1.46497 * 109.47713 * 179.97438 * 19 18 17 21 21 C 1.35491 * 126.98410 * 264.69071 * 20 19 18 22 22 N 1.30523 * 107.30338 * 179.83387 * 21 20 19 23 23 N 1.28589 * 109.67596 * 0.43983 * 22 21 20 24 24 C 1.30513 * 109.67507 * 359.71888 * 23 22 21 25 25 C 1.50706 * 126.35094 * 179.97438 * 24 23 22 26 26 C 1.53001 * 117.49535 * 8.78747 * 25 24 23 27 27 C 1.53006 * 117.49346 * 300.13183 * 25 24 23 28 28 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 29 29 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 33 33 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 34 34 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 35 35 H 0.96999 * 120.00264 * 245.00142 * 17 14 12 36 36 H 1.09000 * 109.47562 * 285.00952 * 18 17 14 37 37 H 1.09004 * 109.46835 * 45.00073 * 18 17 14 38 38 H 1.09004 * 109.46896 * 300.00314 * 19 18 17 39 39 H 1.09004 * 109.47053 * 60.00032 * 19 18 17 40 40 H 1.07994 * 126.34442 * 359.97138 * 21 20 19 41 41 H 1.08997 * 115.55047 * 154.46302 * 25 24 23 42 42 H 1.08997 * 117.49951 * 0.02562 * 26 25 24 43 43 H 1.08998 * 117.49905 * 145.01953 * 26 25 24 44 44 H 1.08999 * 117.49266 * 214.97364 * 27 25 24 45 45 H 1.08990 * 117.49968 * 359.97188 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9607 0.8091 3.3998 18 6 1.1508 -0.0351 4.2817 19 6 0.6085 0.8076 5.4378 20 7 -0.2019 -0.0364 6.3193 21 6 -1.5473 -0.1932 6.2870 22 7 -1.8634 -1.0311 7.2366 23 7 -0.8013 -1.3973 7.8621 24 6 0.2414 -0.8144 7.3363 25 6 1.6730 -0.9761 7.7787 26 6 1.9738 -2.0603 8.8154 27 6 2.0163 -0.5839 9.2172 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.9028 -0.5285 -4.4375 32 1 2.4157 -2.7377 0.9718 33 1 1.6237 -2.2852 2.5003 34 1 0.6904 -2.3002 0.9847 35 1 1.9053 1.7751 3.4682 36 1 0.3187 -0.4566 3.7177 37 1 1.7668 -0.8422 4.6782 38 1 1.4407 1.2291 6.0018 39 1 -0.0075 1.6148 5.0413 40 1 -2.2310 0.2847 5.6012 41 1 2.4256 -0.7893 7.0128 42 1 1.1364 -2.6570 9.1771 43 1 2.9246 -2.5867 8.7317 44 1 2.9951 -0.1395 9.3977 45 1 1.2070 -0.2086 9.8433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331741780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:21 Heat of formation + Delta-G solvation = 45.736159 kcal Electronic energy + Delta-G solvation = -28755.786636 eV Core-core repulsion = 24745.449689 eV Total energy + Delta-G solvation = -4010.336946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.43635 -37.53947 -37.20354 -36.84755 -36.52410 -35.53144 -34.27769 -32.60129 -30.62597 -30.17063 -29.04247 -25.96643 -25.11962 -24.71958 -23.82762 -22.81604 -22.35998 -21.11137 -20.43558 -19.22617 -17.84444 -17.41318 -17.24800 -16.94229 -16.37076 -16.21200 -15.84784 -15.43811 -15.29244 -15.14435 -14.62797 -14.55023 -13.75169 -13.49118 -13.21881 -12.95980 -12.82682 -12.44302 -12.37571 -12.30151 -12.09321 -12.03765 -11.88092 -11.77480 -11.66029 -11.63532 -11.42201 -11.33018 -11.21246 -10.97090 -10.60694 -10.57016 -10.54787 -10.26360 -9.85131 -9.65444 -9.51370 -9.29487 -8.72394 -8.28037 -6.20527 -4.21899 0.80883 1.43393 2.03032 2.57057 3.14011 3.15576 3.25201 3.29238 3.48879 3.75744 3.84718 4.01119 4.11808 4.26050 4.26252 4.43473 4.52120 4.61106 4.65002 4.68168 4.97614 5.06027 5.07074 5.10869 5.28116 5.30898 5.46883 5.52291 5.54409 5.69324 5.80755 5.86600 5.88267 6.05431 6.09853 6.18124 6.33900 6.44355 6.48561 6.65405 6.73162 7.15446 7.25302 7.52061 8.37983 8.46368 8.83650 9.38535 10.92443 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.003039 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.130889 B = 9211.420826 C = 9883.397306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.240 3.760 3 H 0.057 0.943 4 C -0.525 4.525 5 H 0.083 0.917 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.265 1.265 11 H -0.293 1.293 12 N -0.982 5.982 13 C 0.107 3.893 14 S 2.781 3.219 15 O -0.985 6.985 16 O -0.967 6.967 17 N -1.133 6.133 18 C 0.106 3.894 19 C 0.100 3.900 20 N -0.470 5.470 21 C 0.153 3.847 22 N -0.296 5.296 23 N -0.293 5.293 24 C 0.213 3.787 25 C -0.097 4.097 26 C -0.146 4.146 27 C -0.157 4.157 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.266 0.734 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.414 0.586 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.220 0.780 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 4.243 21.363 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.135 3.865 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.101 0.899 6 C -0.129 4.129 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.190 1.190 11 H -0.220 1.220 12 N -0.824 5.824 13 C -0.039 4.039 14 S 2.789 3.211 15 O -0.969 6.969 16 O -0.951 6.951 17 N -0.892 5.892 18 C -0.022 4.022 19 C -0.025 4.025 20 N -0.161 5.161 21 C -0.135 4.135 22 N -0.134 5.134 23 N -0.133 5.133 24 C -0.054 4.054 25 C -0.117 4.117 26 C -0.184 4.184 27 C -0.196 4.196 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.236 0.764 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.769 3.208 22.032 22.581 hybrid contribution -0.468 2.086 -1.445 2.580 sum -4.236 5.294 20.587 21.675 Atomic orbital electron populations 1.22502 0.99116 1.01495 0.99048 1.19103 0.90342 0.93598 0.83415 0.92507 1.21139 1.32746 1.14403 0.88149 0.89946 1.24915 0.95713 0.96554 0.95695 1.69870 1.44986 1.40080 0.98009 0.86948 0.80473 0.83779 0.77579 1.20362 1.18992 1.22001 1.57424 1.70072 1.20042 1.34894 1.21237 1.02288 0.81654 0.98740 1.02001 0.73427 0.73242 0.72403 1.93567 1.68502 1.60447 1.74346 1.93633 1.73855 1.56038 1.71595 1.56273 1.62523 1.17395 1.52978 1.21472 0.96203 0.93644 0.90911 1.22135 0.96443 0.92884 0.91050 1.46112 1.08120 1.35607 1.26243 1.26500 0.82996 1.01683 1.02272 1.74276 1.20862 1.11858 1.06415 1.74215 0.94315 1.21576 1.23207 1.23851 0.97349 0.94402 0.89815 1.20207 0.88136 1.09079 0.94321 1.23046 1.04057 0.91692 0.99578 1.23086 1.03355 0.98767 0.94367 0.93121 0.92107 0.95003 0.92346 0.92439 0.93283 0.90737 0.75250 0.90610 0.89624 0.87578 0.87277 0.76357 0.85502 0.87143 0.87570 0.87682 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.65 37.16 0.32 -2.73 16 2 C 0.24 5.19 2.21 -69.08 -0.15 5.04 16 3 H 0.06 1.30 5.97 -51.93 -0.31 0.99 16 4 C -0.53 -13.95 8.95 -34.44 -0.31 -14.25 16 5 H 0.08 2.39 7.89 -52.49 -0.41 1.98 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 8 Si 0.88 20.60 24.37 -169.99 -4.14 16.46 16 9 H -0.28 -6.15 6.87 56.52 0.39 -5.77 16 10 H -0.26 -5.85 6.53 56.52 0.37 -5.48 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.98 -17.92 3.12 -115.84 -0.36 -18.28 16 13 C 0.11 1.71 9.53 59.85 0.57 2.29 16 14 S 2.78 46.18 6.09 -107.50 -0.66 45.53 16 15 O -0.99 -17.89 16.68 -57.17 -0.95 -18.84 16 16 O -0.97 -19.69 16.70 -57.17 -0.95 -20.64 16 17 N -1.13 -11.83 6.05 -10.61 -0.06 -11.89 16 18 C 0.11 0.91 6.57 -4.04 -0.03 0.88 16 19 C 0.10 0.60 6.10 -4.04 -0.02 0.57 16 20 N -0.47 -4.00 2.75 -115.30 -0.32 -4.32 16 21 C 0.15 1.40 12.74 -89.95 -1.15 0.25 16 22 N -0.30 -3.82 12.21 29.69 0.36 -3.46 16 23 N -0.29 -3.85 11.83 32.80 0.39 -3.47 16 24 C 0.21 2.21 7.55 -154.98 -1.17 1.04 16 25 C -0.10 -0.79 5.90 -91.77 -0.54 -1.33 16 26 C -0.15 -1.08 10.15 -26.69 -0.27 -1.35 16 27 C -0.16 -1.04 10.24 -26.69 -0.27 -1.32 16 28 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 29 H 0.06 1.09 6.66 -51.93 -0.35 0.75 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.64 7.79 -51.93 -0.40 0.23 16 34 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 35 H 0.41 3.27 8.65 -34.47 -0.30 2.97 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.81 7.75 -51.93 -0.40 0.41 16 38 H 0.11 0.50 8.02 -51.93 -0.42 0.09 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.22 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.13 0.91 8.13 -51.93 -0.42 0.48 16 42 H 0.11 0.95 7.92 -51.93 -0.41 0.54 16 43 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -36.39 380.17 -9.81 -46.20 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.49 Total: 1.43 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.12 Total: -8.95 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: 0.78 Total: -66.91 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.91 Total: -39.48 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.14 Total: 16.46 kcal Atomic # 16 Polarization: 46.18 SS G_CDS: -0.66 Total: 45.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.39 -9.81 -46.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331741780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.938 kcal (2) G-P(sol) polarization free energy of solvation -36.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds