Wall clock time and date at job start Wed Apr 1 2020 02:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 N 1.30514 * 126.34831 * 269.69118 * 19 18 17 21 21 N 1.28593 * 109.67611 * 179.82486 * 20 19 18 22 22 C 1.30520 * 109.67067 * 0.44212 * 21 20 19 23 23 C 1.50699 * 126.34583 * 179.72990 * 22 21 20 24 24 C 1.53000 * 117.50253 * 8.75248 * 23 22 21 25 25 C 1.52995 * 117.50089 * 300.09082 * 23 22 21 26 26 N 1.35490 * 107.30613 * 359.73435 * 22 21 20 27 27 C 1.46507 * 126.97821 * 179.97438 * 26 22 21 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.09004 * 115.54892 * 154.42126 * 23 22 21 39 39 H 1.09008 * 117.49664 * 359.97438 * 24 23 22 40 40 H 1.08995 * 117.50419 * 145.01738 * 24 23 22 41 41 H 1.09003 * 117.50117 * 214.97784 * 25 23 22 42 42 H 1.08999 * 117.50214 * 359.97438 * 25 23 22 43 43 H 1.09002 * 109.46898 * 269.97706 * 27 26 22 44 44 H 1.09002 * 109.47099 * 29.97815 * 27 26 22 45 45 H 1.08997 * 109.46961 * 149.97591 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 7 1.1951 0.9889 6.5742 21 7 0.4609 1.7520 7.3038 22 6 -0.6237 2.0720 6.6521 23 6 -1.7439 2.9449 7.1563 24 6 -1.5237 3.6839 8.4778 25 6 -2.4804 2.4905 8.4180 26 7 -0.5558 1.4739 5.4383 27 6 -1.5489 1.5460 4.3635 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7753 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 -2.3276 3.4514 6.3876 39 1 -0.5686 3.5384 8.9827 40 1 -1.9628 4.6764 8.5787 41 1 -3.5487 2.6985 8.4796 42 1 -2.1551 1.5600 8.8832 43 1 -2.2682 0.7351 4.4786 44 1 -2.0688 2.5027 4.4129 45 1 -1.0484 1.4537 3.3997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331758185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:08 Heat of formation + Delta-G solvation = 36.742571 kcal Electronic energy + Delta-G solvation = -28770.287065 eV Core-core repulsion = 24759.560127 eV Total energy + Delta-G solvation = -4010.726938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.38544 -37.60692 -36.77244 -36.29874 -35.76989 -35.29814 -34.91285 -32.65354 -30.67276 -29.20005 -27.98011 -26.33724 -25.67519 -25.20404 -24.40223 -22.78969 -21.29293 -20.87821 -20.47567 -18.98473 -17.61131 -17.41036 -16.94598 -16.71160 -16.51918 -15.99805 -15.78228 -15.20054 -14.91589 -14.46416 -14.20291 -13.74147 -13.65648 -13.51304 -13.33740 -13.21757 -12.87525 -12.49175 -12.12291 -11.96278 -11.82179 -11.78544 -11.59311 -11.53434 -11.44175 -11.38453 -11.31354 -11.03476 -10.98871 -10.86829 -10.58513 -10.50673 -10.39194 -10.37323 -10.09148 -9.58401 -9.34207 -9.16951 -8.51744 -8.08490 -6.14045 -4.20395 0.98481 1.51514 2.14284 2.57075 3.26569 3.31124 3.34492 3.44094 3.48091 3.82479 3.93851 4.08626 4.25552 4.35357 4.42677 4.44980 4.57315 4.73862 4.77566 4.89921 5.05010 5.13632 5.17978 5.24332 5.31690 5.46249 5.46938 5.64019 5.69693 5.73641 5.79081 5.92390 6.03431 6.28362 6.51593 6.55817 6.61837 6.67259 6.87983 6.94164 7.36483 7.54393 7.70527 7.95420 8.19625 8.54615 8.81828 9.45842 10.91719 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.002887 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.707043 B = 9696.027355 C =10495.073984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.989 5.989 13 C 0.106 3.894 14 S 2.780 3.220 15 O -0.988 6.988 16 O -0.968 6.968 17 N -1.130 6.130 18 C 0.213 3.787 19 C 0.167 3.833 20 N -0.272 5.272 21 N -0.292 5.292 22 C 0.207 3.793 23 C -0.090 4.090 24 C -0.148 4.148 25 C -0.157 4.157 26 N -0.463 5.463 27 C 0.065 3.935 28 H 0.034 0.966 29 H 0.007 0.993 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.414 0.586 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 2.426 16.269 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.040 4.040 14 S 2.788 3.212 15 O -0.971 6.971 16 O -0.951 6.951 17 N -0.889 5.889 18 C 0.084 3.916 19 C -0.101 4.101 20 N -0.113 5.113 21 N -0.133 5.133 22 C -0.060 4.060 23 C -0.111 4.111 24 C -0.186 4.186 25 C -0.195 4.195 26 N -0.153 5.153 27 C -0.077 4.077 28 H 0.053 0.947 29 H 0.026 0.974 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.876 2.285 17.176 19.944 hybrid contribution -1.213 0.050 -2.073 2.403 sum -11.088 2.335 15.102 18.881 Atomic orbital electron populations 1.22126 0.98364 0.99711 1.00441 1.18738 0.91179 0.93052 0.80521 0.92319 1.21291 1.31672 1.13065 0.89976 0.91911 1.24903 0.94918 0.94987 0.99032 1.69836 1.36536 1.22705 1.23949 0.86544 0.79434 0.79552 0.81812 1.21229 1.20111 1.20221 1.57742 1.70135 1.19783 1.35619 1.21203 1.01933 0.82110 0.98763 1.02045 0.73522 0.73277 0.72325 1.93558 1.68663 1.60539 1.74387 1.93631 1.73842 1.56050 1.71624 1.56385 1.62631 1.17480 1.52405 1.19413 0.95516 0.90989 0.85659 1.24620 0.85926 1.00913 0.98648 1.74317 1.23310 1.13072 1.00582 1.74234 1.01464 1.12542 1.25055 1.23733 0.98364 0.99953 0.83928 1.20103 0.96464 1.01666 0.92842 1.23045 1.02219 0.96605 0.96712 1.23085 0.98284 1.00019 0.98139 1.45915 1.17774 1.37241 1.14386 1.22259 0.91423 1.04637 0.89420 0.94657 0.97383 0.88812 0.92623 0.92972 0.93312 0.90864 0.75355 0.89775 0.87022 0.85819 0.87110 0.87754 0.87753 0.88129 0.89465 0.88849 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.95 37.16 0.33 -2.66 16 2 C 0.27 6.12 2.62 -69.09 -0.18 5.94 16 3 H 0.06 1.51 6.91 -51.92 -0.36 1.15 16 4 C -0.52 -13.44 8.37 -34.44 -0.29 -13.73 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.88 11.32 55.43 0.63 -23.26 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.99 -18.91 3.12 -115.86 -0.36 -19.27 16 13 C 0.11 1.71 9.53 59.85 0.57 2.28 16 14 S 2.78 52.07 6.09 -107.50 -0.66 51.42 16 15 O -0.99 -19.98 16.68 -57.17 -0.95 -20.93 16 16 O -0.97 -21.98 16.70 -57.17 -0.95 -22.94 16 17 N -1.13 -16.20 6.05 -11.65 -0.07 -16.27 16 18 C 0.21 2.61 6.42 -5.19 -0.03 2.58 16 19 C 0.17 2.19 7.43 -154.99 -1.15 1.04 16 20 N -0.27 -4.31 12.21 32.79 0.40 -3.90 16 21 N -0.29 -4.31 11.83 32.79 0.39 -3.92 16 22 C 0.21 2.37 7.55 -154.99 -1.17 1.20 16 23 C -0.09 -0.69 5.97 -91.77 -0.55 -1.23 16 24 C -0.15 -1.02 10.15 -26.69 -0.27 -1.29 16 25 C -0.16 -0.99 10.24 -26.70 -0.27 -1.26 16 26 N -0.46 -4.92 3.15 -118.00 -0.37 -5.29 16 27 C 0.07 0.44 10.71 59.85 0.64 1.08 16 28 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 34 H 0.07 1.11 6.43 -51.93 -0.33 0.78 16 35 H 0.41 5.55 8.64 -34.47 -0.30 5.26 16 36 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 37 H 0.11 1.39 7.75 -51.93 -0.40 0.99 16 38 H 0.12 0.67 7.49 -51.93 -0.39 0.28 16 39 H 0.11 0.95 7.92 -51.92 -0.41 0.54 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.44 7.38 -51.93 -0.38 0.06 16 45 H 0.10 0.72 7.81 -51.93 -0.41 0.32 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -34.77 384.76 -10.17 -44.93 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.53 Total: 2.54 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.47 Total: -4.48 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: 0.61 Total: -71.92 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.91 Total: -43.87 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.66 Total: 51.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.77 -10.17 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331758185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.677 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds