Wall clock time and date at job start Wed Apr 1 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 S 1.65594 * 120.00077 * 119.99765 * 12 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 12 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 12 2 17 17 N 1.65596 * 107.21909 * 90.00126 * 14 12 2 18 18 C 1.46507 * 119.99863 * 64.99704 * 17 14 12 19 19 C 1.50699 * 109.46885 * 165.00428 * 18 17 14 20 20 N 1.30520 * 126.34473 * 269.69086 * 19 18 17 21 21 N 1.28603 * 109.67401 * 179.82476 * 20 19 18 22 22 C 1.30515 * 109.66983 * 0.45156 * 21 20 19 23 23 C 1.50700 * 126.34813 * 179.73458 * 22 21 20 24 24 C 1.52999 * 117.49829 * 8.73544 * 23 22 21 25 25 C 1.53006 * 117.49368 * 300.08335 * 23 22 21 26 26 N 1.35495 * 126.34852 * 90.00372 * 19 18 17 27 27 C 1.46501 * 126.97842 * 359.97438 * 26 19 18 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 33 33 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 34 34 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 35 35 H 0.96996 * 120.00150 * 245.00343 * 17 14 12 36 36 H 1.08996 * 109.47110 * 285.00299 * 18 17 14 37 37 H 1.08995 * 109.47173 * 45.00687 * 18 17 14 38 38 H 1.08999 * 115.55301 * 154.41233 * 23 22 21 39 39 H 1.09005 * 117.49841 * 0.02562 * 24 23 22 40 40 H 1.09003 * 117.50034 * 145.02014 * 24 23 22 41 41 H 1.09004 * 117.49451 * 214.98157 * 25 23 22 42 42 H 1.09000 * 117.49998 * 359.97041 * 25 23 22 43 43 H 1.09000 * 109.46538 * 89.97997 * 27 26 19 44 44 H 1.08996 * 109.46663 * 209.97624 * 27 26 19 45 45 H 1.09000 * 109.46906 * 329.97759 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4442 -1.8416 19 6 6.6348 -1.3329 -1.7353 20 7 7.4753 -1.2318 -2.7286 21 7 8.6756 -1.1526 -2.2738 22 6 8.6560 -1.2092 -0.9700 23 6 9.8526 -1.1553 -0.0555 24 6 11.2065 -0.8172 -0.6829 25 6 10.9142 -2.2454 -0.2163 26 7 7.3603 -1.3251 -0.5910 27 6 6.8478 -1.4219 0.7781 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7091 1.1614 3.4844 32 1 0.7375 -2.1444 -1.9994 33 1 2.4628 -2.5819 -1.9865 34 1 1.5295 -2.5969 -0.4708 35 1 5.0733 0.6550 -1.5283 36 1 4.7539 -2.0248 -1.0019 37 1 4.8736 -1.9408 -2.7758 38 1 9.6584 -0.7864 0.9516 39 1 11.2316 -0.6333 -1.7570 40 1 11.9032 -0.2261 -0.0884 41 1 11.4186 -2.5934 0.6852 42 1 10.7468 -3.0017 -0.9831 43 1 6.7991 -2.4697 1.0744 44 1 7.5126 -0.8838 1.4537 45 1 5.8506 -0.9844 0.8245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331758203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:09 Heat of formation + Delta-G solvation = 11.723030 kcal Electronic energy + Delta-G solvation = -29060.925243 eV Core-core repulsion = 25049.113377 eV Total energy + Delta-G solvation = -4011.811866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.29235 -38.40815 -38.17338 -37.88392 -36.94439 -36.79251 -35.81225 -34.47164 -31.65267 -30.90052 -28.66286 -27.36245 -27.18388 -26.92129 -25.15936 -23.29322 -22.63059 -22.16181 -21.21980 -20.46683 -18.87789 -18.57304 -18.27028 -18.08684 -17.62591 -17.21653 -16.88344 -16.58306 -16.05469 -15.50959 -15.21454 -15.05456 -14.88388 -14.49988 -14.46284 -14.34965 -13.93566 -13.69251 -13.45862 -13.31075 -13.23263 -13.14196 -12.99136 -12.94812 -12.71122 -12.67152 -12.62008 -12.37098 -12.20014 -12.08140 -12.05714 -11.87604 -11.59731 -11.36194 -11.18800 -11.16797 -10.67200 -10.44184 -10.08189 -9.66233 -8.03830 -6.19443 -0.42531 0.60382 1.37594 1.49701 1.53631 1.57815 1.60100 2.05943 2.49965 2.57806 2.89285 3.00108 3.23931 3.25390 3.42382 3.64312 3.74388 3.92861 3.99281 4.06466 4.08999 4.20200 4.31926 4.56689 4.57642 4.66365 4.74580 4.78909 4.84276 4.85743 4.92358 5.00487 5.02061 5.06260 5.15894 5.19125 5.27913 5.30793 5.62328 5.66700 5.77233 5.83694 5.92387 6.13822 6.32428 6.90001 7.50593 7.58848 9.00715 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.004066 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.760384 B = 6884.337200 C = 8816.013408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.526 4.526 5 H 0.080 0.920 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.258 1.258 10 H -0.300 1.300 11 H -0.271 1.271 12 N -0.991 5.991 13 C 0.094 3.906 14 S 2.803 3.197 15 O -1.002 7.002 16 O -1.014 7.014 17 N -1.117 6.117 18 C 0.212 3.788 19 C 0.163 3.837 20 N -0.314 5.314 21 N -0.332 5.332 22 C 0.213 3.787 23 C -0.103 4.103 24 C -0.149 4.149 25 C -0.142 4.142 26 N -0.457 5.457 27 C 0.055 3.945 28 H 0.068 0.932 29 H 0.015 0.985 30 H 0.045 0.955 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.418 0.582 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.087 0.913 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.615 -8.607 1.349 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.566 4.566 5 H 0.098 0.902 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.182 1.182 10 H -0.226 1.226 11 H -0.196 1.196 12 N -0.834 5.834 13 C -0.051 4.051 14 S 2.811 3.189 15 O -0.985 6.985 16 O -0.999 6.999 17 N -0.878 5.878 18 C 0.084 3.916 19 C -0.107 4.107 20 N -0.155 5.155 21 N -0.173 5.173 22 C -0.054 4.054 23 C -0.123 4.123 24 C -0.186 4.186 25 C -0.181 4.181 26 N -0.146 5.146 27 C -0.086 4.086 28 H 0.087 0.913 29 H 0.034 0.966 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.252 0.748 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.169 0.831 39 H 0.106 0.894 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.598 -8.086 -0.754 17.586 hybrid contribution -0.448 0.174 2.327 2.376 sum 15.150 -7.912 1.573 17.164 Atomic orbital electron populations 1.21963 0.98199 1.00107 0.99770 1.18427 0.91748 0.91494 0.81451 0.95825 1.21606 1.31698 1.13171 0.90080 0.90188 1.25726 0.95225 0.95502 1.01975 1.70030 1.37543 1.24203 1.24263 0.85620 0.79413 0.78453 0.78170 1.18246 1.22608 1.19609 1.57585 1.64527 1.22678 1.38588 1.21499 1.00739 0.80210 1.02657 1.01099 0.72646 0.72124 0.72988 1.93543 1.86260 1.76250 1.42496 1.93553 1.84258 1.34822 1.87232 1.55838 1.31275 1.15164 1.85559 1.19608 0.82100 0.84228 1.05658 1.24606 0.97125 1.06301 0.82634 1.74202 0.96210 1.18649 1.26436 1.74132 1.14398 1.21267 1.07485 1.24408 0.86104 1.01982 0.92923 1.20437 0.84428 1.09477 0.97955 1.23089 0.94773 0.98964 1.01813 1.23135 0.98814 0.91791 1.04326 1.46096 1.06332 1.52503 1.09717 1.22598 1.02696 1.06237 0.77051 0.91296 0.96586 0.93582 0.92963 0.93140 0.90282 0.89745 0.74811 0.87000 0.87031 0.83134 0.89442 0.85254 0.84846 0.89803 0.87437 0.86575 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.41 8.97 71.98 0.65 -5.76 16 2 C 0.27 12.35 2.62 44.25 0.12 12.47 16 3 H 0.02 1.25 6.91 -2.39 -0.02 1.23 16 4 C -0.53 -23.72 7.99 25.60 0.20 -23.52 16 5 H 0.08 3.24 7.33 -2.91 -0.02 3.22 16 6 C 0.02 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -48.34 11.32 21.45 0.24 -48.10 16 8 Si 0.96 36.77 29.54 68.60 2.03 38.80 16 9 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 10 H -0.30 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 12 N -0.99 -36.71 3.12 -520.42 -1.62 -38.34 16 13 C 0.09 2.81 9.28 127.77 1.19 4.00 16 14 S 2.80 103.92 6.09 -56.49 -0.34 103.57 16 15 O -1.00 -39.05 16.68 -128.00 -2.14 -41.19 16 16 O -1.01 -45.89 16.70 -128.00 -2.14 -48.03 16 17 N -1.12 -33.58 6.05 -190.79 -1.15 -34.73 16 18 C 0.21 5.41 6.42 85.63 0.55 5.96 16 19 C 0.16 4.52 7.43 137.98 1.02 5.54 16 20 N -0.31 -10.56 12.21 -50.15 -0.61 -11.17 16 21 N -0.33 -10.45 11.83 -50.15 -0.59 -11.04 16 22 C 0.21 5.12 7.55 137.98 1.04 6.16 16 23 C -0.10 -1.54 5.97 -11.54 -0.07 -1.61 16 24 C -0.15 -2.00 10.15 30.62 0.31 -1.69 16 25 C -0.14 -1.69 10.24 30.62 0.31 -1.38 16 26 N -0.46 -10.33 3.15 -527.25 -1.66 -11.99 16 27 C 0.06 0.84 10.71 127.77 1.37 2.21 16 28 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 1.92 7.67 -2.39 -0.02 1.90 16 31 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.89 7.79 -2.39 -0.02 1.87 16 34 H 0.08 2.48 7.02 -2.39 -0.02 2.46 16 35 H 0.42 12.18 8.64 -96.75 -0.84 11.34 16 36 H 0.11 2.28 7.86 -2.39 -0.02 2.27 16 37 H 0.11 2.81 7.75 -2.39 -0.02 2.79 16 38 H 0.15 1.42 7.49 -2.39 -0.02 1.41 16 39 H 0.09 1.61 7.92 -2.38 -0.02 1.59 16 40 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 44 H 0.12 1.20 7.38 -2.39 -0.02 1.18 16 45 H 0.10 1.73 7.81 -2.39 -0.02 1.71 16 Total: -1.00 -71.67 385.44 -0.67 -72.34 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.18 Total: 26.31 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 7.14 Total: 3.56 kcal Atomic # 7 Polarization: -149.96 SS G_CDS: -5.40 Total: -155.36 kcal Atomic # 8 Polarization: -84.94 SS G_CDS: -4.27 Total: -89.22 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Atomic # 16 Polarization: 103.92 SS G_CDS: -0.34 Total: 103.57 kcal Total: -71.67 -0.67 -72.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331758203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.063 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds