Wall clock time and date at job start Wed Apr 1 2020 02:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46493 * 109.46917 * 2 1 4 4 C 1.46500 * 119.99975 * 274.99958 * 3 2 1 5 5 C 1.50703 * 109.47402 * 280.06469 * 4 3 2 6 6 H 1.08000 * 119.99569 * 4.25029 * 5 4 3 7 7 C 1.37877 * 120.00456 * 184.25303 * 5 4 3 8 8 N 1.31520 * 119.99783 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47176 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47026 * 120.00288 * 9 7 5 12 12 H 1.48495 * 109.47123 * 239.99934 * 9 7 5 13 13 S 1.65595 * 120.00293 * 95.00275 * 3 2 1 14 14 O 1.42103 * 106.40095 * 330.08579 * 13 3 2 15 15 O 1.42097 * 106.40718 * 197.16321 * 13 3 2 16 16 N 1.65604 * 107.21914 * 83.62585 * 13 3 2 17 17 C 1.46496 * 120.00258 * 65.18242 * 16 13 3 18 18 C 1.50695 * 109.47137 * 165.47031 * 17 16 13 19 19 C 1.38634 * 120.39922 * 95.00216 * 18 17 16 20 20 C 1.38581 * 118.55769 * 180.02562 * 19 18 17 21 21 N 1.32285 * 119.19838 * 0.02562 * 20 19 18 22 22 C 1.32482 * 120.74470 * 359.97438 * 21 20 19 23 23 N 1.38406 * 119.21641 * 180.02562 * 22 21 20 24 24 C 1.46495 * 120.00434 * 0.02562 * 23 22 21 25 25 C 1.46495 * 119.99524 * 180.02562 * 23 22 21 26 26 N 1.32259 * 120.40752 * 275.29804 * 18 17 16 27 27 H 1.08995 * 109.46757 * 59.99802 * 1 2 3 28 28 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46298 * 300.00109 * 1 2 3 30 30 H 1.08995 * 109.46540 * 240.00090 * 2 1 3 31 31 H 1.08995 * 109.46757 * 120.00198 * 2 1 3 32 32 H 1.09001 * 109.47087 * 40.06407 * 4 3 2 33 33 H 1.09001 * 109.47308 * 160.06737 * 4 3 2 34 34 H 0.96993 * 119.99526 * 180.02562 * 8 7 5 35 35 H 0.97006 * 119.99493 * 245.18656 * 16 13 3 36 36 H 1.08999 * 109.46958 * 45.47214 * 17 16 13 37 37 H 1.08995 * 109.47141 * 285.47371 * 17 16 13 38 38 H 1.07997 * 120.72226 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.39957 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47403 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47259 * 59.99375 * 24 23 22 42 42 H 1.09003 * 109.46965 * 299.99895 * 24 23 22 43 43 H 1.09003 * 109.47740 * 270.00143 * 25 23 22 44 44 H 1.09005 * 109.47512 * 30.00064 * 25 23 22 45 45 H 1.09003 * 109.47243 * 150.00436 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4383 1.6945 -1.9430 6 1 4.0487 0.9135 -1.5142 7 6 3.8302 2.3126 -3.1114 8 7 3.0871 3.2641 -3.6332 9 14 5.4172 1.7997 -3.9526 10 1 6.0647 0.7166 -3.1698 11 1 5.1156 1.3084 -5.3212 12 1 6.3326 2.9660 -4.0360 13 16 2.4123 2.1202 1.4286 14 8 1.5767 1.5431 2.4226 15 8 2.4523 3.5152 1.1612 16 7 3.9619 1.6711 1.8019 17 6 5.0725 2.0874 0.9421 18 6 6.3765 1.8702 1.6655 19 6 7.1010 0.7043 1.4708 20 6 8.2949 0.5441 2.1559 21 7 8.7051 1.5022 2.9706 22 6 7.9889 2.6046 3.1344 23 7 8.4482 3.5871 3.9943 24 6 9.7128 3.4014 4.7101 25 6 7.6696 4.8127 4.1886 26 7 6.8409 2.7868 2.4982 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3124 1.8779 -1.9115 33 1 2.1825 3.1802 -1.0657 34 1 3.3627 3.6987 -4.4554 35 1 4.1342 1.1322 2.5899 36 1 4.9652 3.1438 0.6960 37 1 5.0630 1.4980 0.0253 38 1 6.7427 -0.0624 0.7999 39 1 8.8834 -0.3522 2.0262 40 1 9.9082 4.2731 5.3345 41 1 10.5230 3.2810 3.9910 42 1 9.6483 2.5120 5.3369 43 1 7.9815 5.5608 3.4597 44 1 6.6099 4.5951 4.0551 45 1 7.8381 5.1944 5.1956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336883177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:11 Heat of formation + Delta-G solvation = -10.174142 kcal Electronic energy + Delta-G solvation = -28948.885116 eV Core-core repulsion = 24936.123718 eV Total energy + Delta-G solvation = -4012.761399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.97005 -37.03561 -36.63996 -36.05774 -35.32240 -35.19000 -33.11700 -32.73412 -31.15432 -29.93194 -28.40985 -26.74542 -26.38144 -25.81869 -23.17952 -22.91036 -21.73921 -21.48244 -18.90311 -17.69392 -17.62156 -17.01931 -16.74820 -16.40556 -15.89384 -15.63642 -15.41410 -15.02108 -14.66245 -14.44686 -14.15432 -13.90927 -13.76823 -13.33924 -13.15855 -12.95076 -12.73773 -12.55100 -12.48388 -12.07553 -12.06308 -12.00170 -11.69180 -11.54160 -11.40722 -11.28745 -11.09076 -10.95174 -10.91900 -10.62250 -10.54905 -10.38708 -10.17515 -10.03931 -9.82010 -9.12600 -9.03038 -8.53211 -8.08039 -7.94756 -6.14504 -4.21643 0.99220 1.23856 1.42078 2.60059 3.21610 3.29600 3.31264 3.51554 3.94532 4.08891 4.19694 4.32302 4.45226 4.66076 4.98756 5.09749 5.14472 5.19602 5.22484 5.26812 5.34056 5.40457 5.52900 5.59068 5.66384 5.73655 5.77651 5.79820 5.87005 6.00305 6.12309 6.23990 6.32573 6.33885 6.67370 6.70533 6.72130 6.91423 7.21740 7.36240 7.40298 7.42989 7.66924 7.82511 8.12454 8.30479 8.82730 9.44390 10.93413 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010078 B = 0.004219 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.605580 B = 6635.800622 C = 8111.639156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.542 4.542 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 S 2.786 3.214 14 O -0.998 6.998 15 O -0.974 6.974 16 N -1.123 6.123 17 C 0.168 3.832 18 C 0.218 3.782 19 C -0.274 4.274 20 C 0.187 3.813 21 N -0.571 5.571 22 C 0.558 3.442 23 N -0.597 5.597 24 C 0.112 3.888 25 C 0.101 3.899 26 N -0.552 5.552 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.407 0.593 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.167 0.833 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.083 0.917 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.905 -4.753 12.511 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.581 4.581 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.209 1.209 13 S 2.794 3.206 14 O -0.982 6.982 15 O -0.957 6.957 16 N -0.881 5.881 17 C 0.042 3.958 18 C 0.068 3.932 19 C -0.300 4.300 20 C 0.020 3.980 21 N -0.294 5.294 22 C 0.202 3.798 23 N -0.315 5.315 24 C -0.031 4.031 25 C -0.042 4.042 26 N -0.275 5.275 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.166 0.834 39 H 0.184 0.816 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.689 -3.020 13.445 16.290 hybrid contribution 1.049 -1.390 -1.146 2.085 sum 9.738 -4.410 12.298 16.295 Atomic orbital electron populations 1.22215 0.96948 1.01335 1.02519 1.20959 0.93690 0.82822 1.02022 1.57745 1.78433 1.23034 1.24086 1.19244 0.97273 0.92649 0.78866 1.21551 1.07316 1.20688 1.08531 0.91718 1.24945 0.96998 0.94705 0.97042 1.69939 1.37851 1.24041 1.20457 0.86604 0.83511 0.78600 0.79701 1.19521 1.20921 1.20873 1.01769 0.72411 0.73752 0.72677 1.93555 1.65116 1.79836 1.59675 1.93587 1.86301 1.30737 1.85105 1.55956 1.24460 1.70223 1.37459 1.20341 0.79986 1.03699 0.91791 1.21528 0.94759 0.87981 0.88902 1.22522 0.99194 1.01145 1.07132 1.22891 0.92225 0.95387 0.87498 1.67868 1.35553 1.02767 1.23198 1.19236 0.85957 0.86535 0.88061 1.45828 1.23687 1.17042 1.44929 1.21513 0.84126 1.01558 0.95923 1.21677 0.97451 0.84502 1.00532 1.67748 1.13959 1.33649 1.12126 0.92067 0.92453 0.92482 0.90065 0.92186 0.94680 0.92521 0.92579 0.76171 0.88134 0.87401 0.83386 0.81594 0.90876 0.92377 0.92402 0.92948 0.89831 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.17 6.02 -4.04 -0.02 2.15 16 3 N -0.99 -19.47 2.84 -115.66 -0.33 -19.80 16 4 C 0.24 5.71 5.46 -5.19 -0.03 5.68 16 5 C -0.54 -13.20 8.51 -34.44 -0.29 -13.49 16 6 H 0.06 1.47 6.46 -52.49 -0.34 1.14 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 9 Si 0.89 19.76 29.54 -169.99 -5.02 14.73 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 S 2.79 54.28 6.07 -107.50 -0.65 53.63 16 14 O -1.00 -20.12 17.17 -57.17 -0.98 -21.10 16 15 O -0.97 -22.56 16.01 -57.17 -0.92 -23.48 16 16 N -1.12 -18.29 6.05 -11.66 -0.07 -18.36 16 17 C 0.17 2.85 6.55 -5.20 -0.03 2.82 16 18 C 0.22 3.40 6.22 -82.26 -0.51 2.89 16 19 C -0.27 -3.55 9.83 -39.31 -0.39 -3.94 16 20 C 0.19 2.23 11.30 -17.23 -0.19 2.04 16 21 N -0.57 -7.93 9.59 -13.93 -0.13 -8.07 16 22 C 0.56 8.34 8.18 -322.81 -2.64 5.70 16 23 N -0.60 -7.38 3.37 -191.90 -0.65 -8.03 16 24 C 0.11 1.01 10.14 59.84 0.61 1.62 16 25 C 0.10 1.07 10.41 59.84 0.62 1.70 16 26 N -0.55 -8.99 9.05 -10.15 -0.09 -9.08 16 27 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 30 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 31 H 0.06 0.87 7.78 -51.93 -0.40 0.47 16 32 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.06 1.50 6.77 -51.93 -0.35 1.15 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.41 5.70 8.64 -34.47 -0.30 5.41 16 36 H 0.10 1.92 7.76 -51.93 -0.40 1.52 16 37 H 0.11 1.86 5.78 -51.93 -0.30 1.56 16 38 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 1.04 7.33 -51.93 -0.38 0.66 16 45 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -32.83 388.08 -11.49 -44.32 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.64 Total: 6.61 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.60 Total: 6.54 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -0.54 Total: -87.11 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.90 Total: -44.58 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 54.28 SS G_CDS: -0.65 Total: 53.63 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.83 -11.49 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336883177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.146 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds