Wall clock time and date at job start Wed Apr 1 2020 02:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47003 * 2 1 4 4 C 1.46503 * 119.99424 * 85.00392 * 3 2 1 5 5 C 1.50699 * 109.46825 * 274.99799 * 4 3 2 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.65597 * 120.00274 * 265.00473 * 3 2 1 14 14 O 1.42097 * 106.40126 * 23.53757 * 13 3 2 15 15 O 1.42105 * 106.40049 * 156.45912 * 13 3 2 16 16 N 1.65596 * 107.21591 * 269.99752 * 13 3 2 17 17 C 1.47424 * 125.65015 * 90.02614 * 16 13 3 18 18 C 1.54906 * 104.83670 * 155.83299 * 17 16 13 19 19 C 1.55162 * 101.57984 * 37.00936 * 18 17 16 20 20 C 1.47022 * 125.64989 * 269.71536 * 16 13 3 21 21 H 1.08997 * 109.88486 * 300.51445 * 20 16 13 22 22 C 1.50703 * 109.88243 * 61.68331 * 20 16 13 23 23 N 1.30518 * 126.34559 * 44.68594 * 22 20 16 24 24 N 1.28596 * 109.66778 * 179.83005 * 23 22 20 25 25 C 1.30521 * 109.67743 * 0.44622 * 24 23 22 26 26 N 1.35494 * 107.30659 * 359.73348 * 25 24 23 27 27 C 1.46500 * 126.98236 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.46721 * 299.99160 * 1 2 3 29 29 H 1.08995 * 109.47716 * 59.99843 * 1 2 3 30 30 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47049 * 240.00632 * 2 1 3 32 32 H 1.08995 * 109.47716 * 120.00157 * 2 1 3 33 33 H 1.09004 * 109.46958 * 155.00211 * 4 3 2 34 34 H 1.08997 * 109.47731 * 34.99887 * 4 3 2 35 35 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.36648 * 274.67498 * 17 16 13 37 37 H 1.09008 * 110.36666 * 36.99525 * 17 16 13 38 38 H 1.09003 * 111.00619 * 155.08642 * 18 17 16 39 39 H 1.08999 * 111.00559 * 278.93917 * 18 17 16 40 40 H 1.08997 * 110.71831 * 82.86481 * 19 18 17 41 41 H 1.09000 * 110.71948 * 206.13365 * 19 18 17 42 42 H 1.07993 * 126.34919 * 179.73402 * 25 24 23 43 43 H 1.08998 * 109.46807 * 269.99504 * 27 26 25 44 44 H 1.08994 * 109.47007 * 29.99782 * 27 26 25 45 45 H 1.09005 * 109.46935 * 149.99889 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7287 1.6357 6 1 -0.0229 2.5941 0.9949 7 6 0.7226 3.4678 2.7941 8 7 -0.4315 4.0086 3.1188 9 14 2.2081 3.7013 3.9023 10 1 2.9463 4.9222 3.4901 11 1 3.1014 2.5205 3.7880 12 1 1.7577 3.8467 5.3099 13 16 2.4120 2.1203 -1.4286 14 8 1.6867 1.4417 -2.4447 15 8 2.3055 3.5188 -1.1996 16 7 4.0142 1.8139 -1.7137 17 6 4.5490 0.6597 -2.4588 18 6 5.9330 1.1271 -2.9743 19 6 6.4340 1.9879 -1.7846 20 6 5.1387 2.6513 -1.2711 21 1 5.0421 3.6531 -1.6895 22 6 5.1641 2.7215 0.2340 23 7 5.0100 1.7210 1.0578 24 7 5.0930 2.1418 2.2702 25 6 5.2944 3.4313 2.2750 26 7 5.3453 3.8362 0.9829 27 6 5.5534 5.2017 0.4948 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.9079 2.8918 1.1514 34 1 2.4690 1.4182 2.0481 35 1 -0.5112 4.5289 3.9336 36 1 4.6608 -0.1997 -1.7978 37 1 3.8959 0.4130 -3.2960 38 1 6.5931 0.2770 -3.1468 39 1 5.8307 1.7297 -3.8768 40 1 6.8809 1.3589 -1.0148 41 1 7.1420 2.7430 -2.1262 42 1 5.4008 4.0593 3.1471 43 1 4.5896 5.6984 0.3832 44 1 6.1659 5.7531 1.2080 45 1 6.0593 5.1694 -0.4702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336895473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:43 Heat of formation + Delta-G solvation = 30.709501 kcal Electronic energy + Delta-G solvation = -31563.192462 eV Core-core repulsion = 27552.203911 eV Total energy + Delta-G solvation = -4010.988551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.97527 -38.57116 -36.71688 -36.02226 -35.22760 -34.88191 -32.43369 -31.42403 -30.94758 -29.95031 -28.28946 -27.48566 -27.12012 -23.25932 -22.45057 -22.19145 -21.66873 -21.58164 -20.62259 -18.52152 -17.39553 -17.33768 -16.99823 -16.46862 -16.12340 -16.00993 -15.38716 -14.83818 -14.52998 -14.19956 -13.87934 -13.68095 -13.43052 -13.28688 -13.08030 -12.97031 -12.72650 -12.65407 -12.46773 -11.90707 -11.84642 -11.61470 -11.50226 -11.39393 -11.33807 -11.27593 -11.22878 -11.00107 -10.95059 -10.90971 -10.38828 -10.18865 -10.10449 -10.03104 -9.93918 -9.35051 -9.17245 -8.82056 -8.51636 -7.97415 -6.01342 -3.99247 1.06808 1.93369 2.60174 3.10481 3.23047 3.36079 3.47677 3.52950 4.02269 4.13550 4.38907 4.46829 4.47447 4.58389 4.73569 4.83642 4.95356 5.00695 5.06685 5.27841 5.32690 5.40697 5.46623 5.51407 5.57659 5.62255 5.67066 5.80873 5.90988 5.96224 6.02153 6.06842 6.20728 6.25712 6.34086 6.41011 6.48861 6.77195 6.93337 6.99108 7.15419 7.30668 7.55695 7.71255 8.57086 8.97993 9.03536 9.58894 11.11275 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.007604 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.794718 B = 3681.518602 C = 5182.392334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.139 3.861 3 N -0.975 5.975 4 C 0.243 3.757 5 C -0.526 4.526 6 H 0.078 0.922 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.850 3.150 10 H -0.282 1.282 11 H -0.231 1.231 12 H -0.289 1.289 13 S 2.788 3.212 14 O -0.985 6.985 15 O -0.963 6.963 16 N -1.008 6.008 17 C 0.116 3.884 18 C -0.126 4.126 19 C -0.115 4.115 20 C 0.246 3.754 21 H 0.092 0.908 22 C 0.140 3.860 23 N -0.260 5.260 24 N -0.281 5.281 25 C 0.149 3.851 26 N -0.465 5.465 27 C 0.068 3.932 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.017 0.983 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.211 0.789 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.785 -2.198 -9.640 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 N -0.816 5.816 4 C 0.119 3.881 5 C -0.566 4.566 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.676 3.324 10 H -0.208 1.208 11 H -0.154 1.154 12 H -0.216 1.216 13 S 2.798 3.202 14 O -0.970 6.970 15 O -0.947 6.947 16 N -0.844 5.844 17 C -0.009 4.009 18 C -0.165 4.165 19 C -0.155 4.155 20 C 0.135 3.865 21 H 0.110 0.890 22 C -0.128 4.128 23 N -0.102 5.102 24 N -0.121 5.121 25 C -0.138 4.138 26 N -0.156 5.156 27 C -0.075 4.075 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.227 0.773 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.801 -2.959 -9.531 19.541 hybrid contribution 0.855 1.725 0.826 2.095 sum 17.656 -1.233 -8.706 19.724 Atomic orbital electron populations 1.22267 0.96134 1.00834 1.03883 1.20947 0.94707 0.81831 1.01216 1.57407 1.77695 1.23137 1.23378 1.19368 0.96909 0.90887 0.80900 1.21530 0.96058 1.31330 1.07657 0.90361 1.24853 0.95696 0.95057 0.97421 1.69910 1.24119 1.34747 1.25034 0.87253 0.84771 0.80193 0.80165 1.20800 1.15432 1.21553 1.01788 0.71726 0.73621 0.73030 1.93540 1.69228 1.76484 1.57717 1.93596 1.84974 1.30359 1.85779 1.59561 1.22865 1.34376 1.67624 1.22033 0.95003 0.88453 0.95429 1.22762 0.96062 1.00015 0.97613 1.22676 0.94711 0.99625 0.98509 1.19361 0.88253 0.95975 0.82882 0.88986 1.25177 1.06646 0.83507 0.97499 1.74241 1.16406 1.24204 0.95353 1.74347 1.16701 1.07559 1.13535 1.26334 1.04977 0.95111 0.87372 1.46073 1.52780 1.09637 1.07070 1.22181 1.04445 0.79469 1.01427 0.89988 0.92977 0.93042 0.92236 0.90926 0.96534 0.94345 0.92834 0.91060 0.89815 0.89659 0.90448 0.89601 0.89964 0.77271 0.89004 0.88986 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 9.83 37.16 0.37 -3.00 16 2 C 0.14 2.66 6.09 -4.04 -0.02 2.63 16 3 N -0.98 -21.42 2.86 -115.66 -0.33 -21.75 16 4 C 0.24 6.06 2.47 -5.19 -0.01 6.04 16 5 C -0.53 -15.44 8.97 -34.44 -0.31 -15.75 16 6 H 0.08 2.50 7.13 -52.49 -0.37 2.13 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 9 Si 0.85 21.17 25.77 -169.99 -4.38 16.79 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.23 -5.51 5.54 56.52 0.31 -5.20 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 S 2.79 58.05 5.98 -107.50 -0.64 57.41 16 14 O -0.99 -21.29 16.43 -57.17 -0.94 -22.23 16 15 O -0.96 -23.12 16.69 -57.17 -0.95 -24.07 16 16 N -1.01 -15.67 3.45 -105.64 -0.36 -16.04 16 17 C 0.12 1.36 7.11 -2.53 -0.02 1.34 16 18 C -0.13 -1.03 7.08 -24.58 -0.17 -1.20 16 19 C -0.12 -1.06 6.46 -24.90 -0.16 -1.22 16 20 C 0.25 3.28 3.15 -68.11 -0.21 3.07 16 21 H 0.09 1.11 7.24 -51.93 -0.38 0.74 16 22 C 0.14 2.24 5.00 -154.98 -0.78 1.46 16 23 N -0.26 -4.82 10.57 32.80 0.35 -4.47 16 24 N -0.28 -5.40 10.67 29.69 0.32 -5.08 16 25 C 0.15 2.42 10.30 -89.94 -0.93 1.50 16 26 N -0.47 -6.86 3.02 -122.69 -0.37 -7.23 16 27 C 0.07 0.68 10.85 59.85 0.65 1.33 16 28 H 0.08 1.84 6.59 -51.93 -0.34 1.50 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.98 7.61 -51.92 -0.40 0.59 16 32 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 33 H 0.02 0.42 3.97 -51.93 -0.21 0.21 16 34 H 0.04 0.99 7.00 -51.93 -0.36 0.63 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.96 7.78 -51.92 -0.40 0.55 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.86 7.85 -51.93 -0.41 0.46 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.21 2.75 8.06 -52.49 -0.42 2.33 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.63 7.45 -51.93 -0.39 0.25 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -39.02 364.04 -9.46 -48.48 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.70 Total: 2.02 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.70 Total: -1.77 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: 0.37 Total: -82.11 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.89 Total: -46.30 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.38 Total: 16.79 kcal Atomic # 16 Polarization: 58.05 SS G_CDS: -0.64 Total: 57.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.02 -9.46 -48.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336895473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.188 kcal (2) G-P(sol) polarization free energy of solvation -39.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds