Wall clock time and date at job start Wed Apr 1 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47003 * 2 1 4 4 C 1.46503 * 119.99424 * 85.00392 * 3 2 1 5 5 C 1.50699 * 109.46825 * 274.99799 * 4 3 2 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.65597 * 120.00274 * 265.00473 * 3 2 1 14 14 O 1.42097 * 106.40126 * 23.53757 * 13 3 2 15 15 O 1.42105 * 106.40049 * 156.45912 * 13 3 2 16 16 N 1.65596 * 107.21591 * 269.99752 * 13 3 2 17 17 C 1.47424 * 125.65015 * 90.02614 * 16 13 3 18 18 C 1.54906 * 104.83670 * 155.83299 * 17 16 13 19 19 C 1.55162 * 101.57984 * 37.00936 * 18 17 16 20 20 C 1.47022 * 125.64989 * 269.71536 * 16 13 3 21 21 H 1.08997 * 109.88486 * 300.51445 * 20 16 13 22 22 C 1.50703 * 109.88243 * 61.68331 * 20 16 13 23 23 N 1.30518 * 126.34559 * 44.68594 * 22 20 16 24 24 N 1.28596 * 109.66778 * 179.83005 * 23 22 20 25 25 C 1.30521 * 109.67743 * 0.44622 * 24 23 22 26 26 N 1.35494 * 107.30659 * 359.73348 * 25 24 23 27 27 C 1.46500 * 126.98236 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.46721 * 299.99160 * 1 2 3 29 29 H 1.08995 * 109.47716 * 59.99843 * 1 2 3 30 30 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47049 * 240.00632 * 2 1 3 32 32 H 1.08995 * 109.47716 * 120.00157 * 2 1 3 33 33 H 1.09004 * 109.46958 * 155.00211 * 4 3 2 34 34 H 1.08997 * 109.47731 * 34.99887 * 4 3 2 35 35 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.36648 * 274.67498 * 17 16 13 37 37 H 1.09008 * 110.36666 * 36.99525 * 17 16 13 38 38 H 1.09003 * 111.00619 * 155.08642 * 18 17 16 39 39 H 1.08999 * 111.00559 * 278.93917 * 18 17 16 40 40 H 1.08997 * 110.71831 * 82.86481 * 19 18 17 41 41 H 1.09000 * 110.71948 * 206.13365 * 19 18 17 42 42 H 1.07993 * 126.34919 * 179.73402 * 25 24 23 43 43 H 1.08998 * 109.46807 * 269.99504 * 27 26 25 44 44 H 1.08994 * 109.47007 * 29.99782 * 27 26 25 45 45 H 1.09005 * 109.46935 * 149.99889 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7287 1.6357 6 1 -0.0229 2.5941 0.9949 7 6 0.7226 3.4678 2.7941 8 7 -0.4315 4.0086 3.1188 9 14 2.2081 3.7013 3.9023 10 1 2.9463 4.9222 3.4901 11 1 3.1014 2.5205 3.7880 12 1 1.7577 3.8467 5.3099 13 16 2.4120 2.1203 -1.4286 14 8 1.6867 1.4417 -2.4447 15 8 2.3055 3.5188 -1.1996 16 7 4.0142 1.8139 -1.7137 17 6 4.5490 0.6597 -2.4588 18 6 5.9330 1.1271 -2.9743 19 6 6.4340 1.9879 -1.7846 20 6 5.1387 2.6513 -1.2711 21 1 5.0421 3.6531 -1.6895 22 6 5.1641 2.7215 0.2340 23 7 5.0100 1.7210 1.0578 24 7 5.0930 2.1418 2.2702 25 6 5.2944 3.4313 2.2750 26 7 5.3453 3.8362 0.9829 27 6 5.5534 5.2017 0.4948 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.9079 2.8918 1.1514 34 1 2.4690 1.4182 2.0481 35 1 -0.5112 4.5289 3.9336 36 1 4.6608 -0.1997 -1.7978 37 1 3.8959 0.4130 -3.2960 38 1 6.5931 0.2770 -3.1468 39 1 5.8307 1.7297 -3.8768 40 1 6.8809 1.3589 -1.0148 41 1 7.1420 2.7430 -2.1262 42 1 5.4008 4.0593 3.1471 43 1 4.5896 5.6984 0.3832 44 1 6.1659 5.7531 1.2080 45 1 6.0593 5.1694 -0.4702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336895473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:42 Heat of formation + Delta-G solvation = 0.563674 kcal Electronic energy + Delta-G solvation = -31564.499683 eV Core-core repulsion = 27552.203911 eV Total energy + Delta-G solvation = -4012.295772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.13671 -39.53453 -38.43135 -37.78923 -36.96068 -35.94937 -34.65599 -32.48921 -31.94877 -31.75075 -29.32137 -29.13057 -28.37959 -24.38117 -24.31107 -23.41182 -23.32893 -22.46098 -21.75248 -19.89061 -19.21344 -18.85734 -18.48619 -17.99300 -17.44470 -17.19718 -16.78324 -16.36594 -15.92504 -15.57540 -15.25864 -15.01629 -14.82813 -14.63197 -14.40929 -14.26836 -14.21726 -13.75035 -13.69537 -13.48306 -13.30162 -13.27093 -13.13590 -12.94605 -12.83059 -12.79273 -12.59579 -12.43605 -12.22600 -12.06592 -11.96714 -11.78210 -11.65506 -11.53377 -11.29010 -11.03546 -10.78999 -10.40399 -10.02116 -9.78328 -8.31324 -6.35778 -0.50641 0.79432 1.22313 1.34120 1.54222 1.59495 1.86211 2.03772 2.34308 2.49999 2.99974 3.06986 3.23878 3.56974 3.66496 3.81921 3.88555 3.89835 3.97215 4.24338 4.32349 4.38196 4.41512 4.46776 4.58974 4.61629 4.66166 4.68131 4.83602 4.89258 4.91071 4.94093 4.98905 5.04216 5.10318 5.16059 5.18729 5.32848 5.38039 5.44214 5.48015 5.51528 5.83211 5.93450 6.29544 6.66553 7.26856 7.77363 8.84548 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.007604 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.794718 B = 3681.518602 C = 5182.392334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.132 3.868 3 N -0.989 5.989 4 C 0.269 3.731 5 C -0.536 4.536 6 H 0.033 0.967 7 C 0.007 3.993 8 N -0.948 5.948 9 Si 0.921 3.079 10 H -0.256 1.256 11 H -0.217 1.217 12 H -0.290 1.290 13 S 2.799 3.201 14 O -1.001 7.001 15 O -1.004 7.004 16 N -1.004 6.004 17 C 0.102 3.898 18 C -0.111 4.111 19 C -0.103 4.103 20 C 0.232 3.768 21 H 0.106 0.894 22 C 0.137 3.863 23 N -0.291 5.291 24 N -0.323 5.323 25 C 0.142 3.858 26 N -0.467 5.467 27 C 0.056 3.944 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.237 0.763 43 H 0.071 0.929 44 H 0.127 0.873 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.773 -2.319 -10.734 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 N -0.829 5.829 4 C 0.144 3.856 5 C -0.575 4.575 6 H 0.051 0.949 7 C -0.190 4.190 8 N -0.589 5.589 9 Si 0.743 3.257 10 H -0.180 1.180 11 H -0.139 1.139 12 H -0.216 1.216 13 S 2.810 3.190 14 O -0.985 6.985 15 O -0.988 6.988 16 N -0.844 5.844 17 C -0.022 4.022 18 C -0.150 4.150 19 C -0.143 4.143 20 C 0.123 3.877 21 H 0.124 0.876 22 C -0.133 4.133 23 N -0.132 5.132 24 N -0.163 5.163 25 C -0.146 4.146 26 N -0.156 5.156 27 C -0.085 4.085 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.253 0.747 43 H 0.089 0.911 44 H 0.145 0.855 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 20.780 -3.087 -10.658 23.557 hybrid contribution -0.436 1.736 1.046 2.073 sum 20.344 -1.351 -9.612 22.541 Atomic orbital electron populations 1.22204 0.96980 1.02411 1.01025 1.21174 0.94062 0.80996 1.03098 1.57447 1.78835 1.23960 1.22620 1.18859 0.94092 0.90615 0.82029 1.21821 0.96824 1.31663 1.07206 0.94908 1.25872 0.99259 0.94610 0.99250 1.70082 1.26832 1.36004 1.25938 0.86180 0.80681 0.81635 0.77246 1.18022 1.13890 1.21625 1.01142 0.72827 0.72585 0.72481 1.93508 1.70734 1.76449 1.57799 1.93535 1.86252 1.32798 1.86180 1.59096 1.21590 1.36118 1.67595 1.22419 0.97165 0.87386 0.95222 1.22796 0.93722 1.01020 0.97496 1.22703 0.92883 1.00292 0.98394 1.19937 0.89267 0.96887 0.81609 0.87648 1.25654 1.05580 0.83599 0.98472 1.74132 1.17847 1.25653 0.95618 1.74236 1.18487 1.09289 1.14298 1.26865 1.04094 0.94825 0.88772 1.46358 1.51860 1.10887 1.06537 1.22578 1.04338 0.77360 1.04212 0.93869 0.94667 0.89244 0.89199 0.90030 0.95992 0.95111 0.92658 0.90764 0.89742 0.86805 0.88849 0.90344 0.86334 0.74707 0.91063 0.85511 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.75 9.83 71.98 0.71 -6.04 16 2 C 0.13 5.05 6.09 86.38 0.53 5.58 16 3 N -0.99 -44.08 2.86 -519.83 -1.48 -45.57 16 4 C 0.27 13.64 2.47 85.63 0.21 13.85 16 5 C -0.54 -32.84 8.97 25.60 0.23 -32.61 16 6 H 0.03 2.24 7.13 -2.91 -0.02 2.22 16 7 C 0.01 0.45 5.47 84.65 0.46 0.91 16 8 N -0.95 -62.08 13.96 21.45 0.30 -61.78 16 9 Si 0.92 44.41 25.77 68.60 1.77 46.18 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 11 H -0.22 -9.90 5.54 99.48 0.55 -9.34 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 S 2.80 116.72 5.98 -56.49 -0.34 116.39 16 14 O -1.00 -43.33 16.43 -128.00 -2.10 -45.43 16 15 O -1.00 -49.01 16.69 -128.00 -2.14 -51.14 16 16 N -1.00 -29.42 3.45 -488.14 -1.68 -31.11 16 17 C 0.10 2.11 7.11 86.85 0.62 2.72 16 18 C -0.11 -1.31 7.08 31.99 0.23 -1.08 16 19 C -0.10 -1.44 6.46 31.78 0.21 -1.23 16 20 C 0.23 5.56 3.15 44.59 0.14 5.70 16 21 H 0.11 2.22 7.24 -2.39 -0.02 2.20 16 22 C 0.14 4.09 5.00 137.98 0.69 4.78 16 23 N -0.29 -10.39 10.57 -50.15 -0.53 -10.92 16 24 N -0.32 -11.92 10.67 -59.99 -0.64 -12.56 16 25 C 0.14 4.30 10.30 180.11 1.86 6.15 16 26 N -0.47 -12.59 3.02 -542.07 -1.64 -14.23 16 27 C 0.06 0.95 10.85 127.77 1.39 2.33 16 28 H 0.04 2.05 6.59 -2.39 -0.02 2.04 16 29 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 31 H 0.09 2.87 7.61 -2.38 -0.02 2.85 16 32 H 0.08 2.95 8.00 -2.39 -0.02 2.94 16 33 H 0.02 1.11 3.97 -2.39 -0.01 1.10 16 34 H 0.03 1.61 7.00 -2.39 -0.02 1.59 16 35 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.73 7.78 -2.38 -0.02 1.71 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.27 7.85 -2.39 -0.02 1.26 16 41 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 42 H 0.24 5.41 8.06 -2.91 -0.02 5.39 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 44 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.12 1.22 7.45 -2.38 -0.02 1.20 16 Total: -1.00 -90.92 364.04 -0.38 -91.31 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.84 Total: 17.80 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 7.26 Total: 1.06 kcal Atomic # 7 Polarization: -170.48 SS G_CDS: -5.68 Total: -176.16 kcal Atomic # 8 Polarization: -92.33 SS G_CDS: -4.24 Total: -96.57 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.77 Total: 46.18 kcal Atomic # 16 Polarization: 116.72 SS G_CDS: -0.34 Total: 116.39 kcal Total: -90.92 -0.38 -91.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336895473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.869 kcal (2) G-P(sol) polarization free energy of solvation -90.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds