Wall clock time and date at job start Wed Apr 1 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47315 * 2 1 4 4 C 1.46496 * 120.00265 * 275.00454 * 3 2 1 5 5 C 1.50700 * 109.47208 * 274.93794 * 4 3 2 6 6 H 1.08002 * 119.99705 * 5.04958 * 5 4 3 7 7 C 1.37875 * 120.00105 * 185.04997 * 5 4 3 8 8 N 1.31515 * 120.00028 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99885 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46627 * 90.00661 * 9 7 5 11 11 H 1.48500 * 109.47204 * 209.99852 * 9 7 5 12 12 H 1.48490 * 109.47330 * 330.00699 * 9 7 5 13 13 S 1.65603 * 119.99514 * 94.99972 * 3 2 1 14 14 O 1.42093 * 106.40418 * 341.84617 * 13 3 2 15 15 O 1.42101 * 106.40121 * 208.92354 * 13 3 2 16 16 N 1.65605 * 107.21371 * 95.38563 * 13 3 2 17 17 C 1.46502 * 120.00026 * 294.66876 * 16 13 3 18 18 H 1.08995 * 109.46913 * 5.21499 * 17 16 13 19 19 C 1.53001 * 109.46993 * 245.21917 * 17 16 13 20 20 C 1.50696 * 109.46879 * 125.21901 * 17 16 13 21 21 N 1.30502 * 126.37310 * 44.97691 * 20 17 16 22 22 N 1.28572 * 109.66802 * 179.97438 * 21 20 17 23 23 C 1.30683 * 109.63231 * 359.90800 * 22 21 20 24 24 N 1.35167 * 107.33613 * 0.19498 * 23 22 21 25 25 C 1.46793 * 111.15366 * 179.69764 * 24 23 22 26 26 C 1.54768 * 105.58195 * 17.04386 * 25 24 23 27 27 C 1.51345 * 142.71736 * 180.16870 * 23 22 21 28 28 H 1.08995 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46676 * 299.99675 * 1 2 3 30 30 H 1.08994 * 109.47247 * 59.99257 * 1 2 3 31 31 H 1.09007 * 109.46676 * 240.00324 * 2 1 3 32 32 H 1.08994 * 109.47247 * 120.00743 * 2 1 3 33 33 H 1.08997 * 109.46922 * 34.94019 * 4 3 2 34 34 H 1.09006 * 109.47206 * 154.93391 * 4 3 2 35 35 H 0.97000 * 119.99853 * 179.97438 * 8 7 5 36 36 H 0.97006 * 119.99875 * 114.67482 * 16 13 3 37 37 H 1.08995 * 109.47307 * 55.67441 * 19 17 16 38 38 H 1.09002 * 109.46864 * 175.68021 * 19 17 16 39 39 H 1.08998 * 109.46828 * 295.67444 * 19 17 16 40 40 H 1.09001 * 110.23110 * 136.06460 * 25 24 23 41 41 H 1.08991 * 110.23294 * 257.94220 * 25 24 23 42 42 H 1.08994 * 111.07535 * 216.28711 * 26 25 24 43 43 H 1.09006 * 110.98500 * 92.44849 * 26 25 24 44 44 H 1.09000 * 110.46932 * 282.26919 * 27 23 22 45 45 H 1.09001 * 110.46977 * 44.74935 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1088 -1.2638 5 6 3.4954 1.7901 -1.8816 6 1 4.1387 1.0520 -1.4257 7 6 3.8974 2.4407 -3.0288 8 7 5.0641 2.1622 -3.5682 9 14 2.7843 3.7167 -3.8177 10 1 3.0863 5.0554 -3.2502 11 1 3.0164 3.7371 -5.2843 12 1 1.3658 3.3722 -3.5456 13 16 2.4122 2.1201 1.4288 14 8 1.7880 1.3638 2.4571 15 8 2.1839 3.5096 1.2382 16 7 4.0447 1.9391 1.6404 17 6 4.6141 0.6039 1.8389 18 1 3.8310 -0.1455 1.7249 19 6 5.2111 0.5079 3.2444 20 6 5.6943 0.3615 0.8166 21 7 6.6353 1.1974 0.4719 22 7 7.3826 0.6613 -0.4266 23 6 6.9521 -0.5433 -0.6942 24 7 5.8691 -0.7659 0.0833 25 6 5.3104 -2.1020 -0.1566 26 6 6.4247 -2.8946 -0.8814 27 6 7.2305 -1.7587 -1.5520 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.3623 1.8091 -1.9455 34 1 2.0911 3.1803 -1.0756 35 1 5.3467 2.6197 -4.3755 36 1 4.6239 2.7172 1.6330 37 1 4.4480 0.7587 3.9812 38 1 5.5658 -0.5077 3.4198 39 1 6.0448 1.2044 3.3333 40 1 5.0614 -2.5819 0.7899 41 1 4.4246 -2.0324 -0.7878 42 1 6.0043 -3.5679 -1.6283 43 1 7.0415 -3.4417 -0.1684 44 1 6.8813 -1.5939 -2.5713 45 1 8.2951 -1.9925 -1.5477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337059721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:44 Heat of formation + Delta-G solvation = 16.712249 kcal Electronic energy + Delta-G solvation = -30748.127249 eV Core-core repulsion = 26736.531731 eV Total energy + Delta-G solvation = -4011.595518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.88088 -37.12745 -36.86440 -36.26375 -36.02005 -35.36634 -32.61772 -31.86402 -30.31719 -29.86287 -28.97156 -27.23726 -27.17334 -23.69486 -22.96954 -22.33924 -21.62266 -20.71248 -20.22106 -18.92842 -17.44555 -17.04510 -16.87964 -16.77659 -16.26012 -15.63464 -15.24227 -14.50454 -14.31117 -14.21030 -14.01256 -13.54540 -13.46810 -13.30419 -13.14470 -13.07523 -12.81603 -12.54627 -12.25608 -12.05181 -11.97323 -11.70108 -11.64655 -11.60697 -11.53329 -11.37349 -11.27464 -11.17236 -11.01682 -10.82066 -10.57392 -10.45711 -10.22489 -9.79389 -9.64611 -9.56234 -9.45227 -8.59034 -8.49309 -8.17616 -6.08945 -4.10208 1.13560 2.25487 2.76757 3.26789 3.31972 3.35719 3.38930 3.52802 3.91956 4.02318 4.38652 4.40557 4.54184 4.62454 4.73604 4.81039 4.88119 5.15171 5.18762 5.21876 5.26043 5.42696 5.45449 5.52001 5.57443 5.62518 5.68301 5.78173 5.83977 5.91019 5.93825 6.07833 6.12789 6.18131 6.41374 6.46041 6.47481 6.71229 6.82074 7.03784 7.24802 7.26626 7.45115 7.56372 8.44016 8.92417 9.32229 9.50332 11.01983 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.008811 B = 0.006911 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.024830 B = 4050.689110 C = 5519.182167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.987 5.987 4 C 0.219 3.781 5 C -0.541 4.541 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.880 5.880 9 Si 0.865 3.135 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 S 2.786 3.214 14 O -0.994 6.994 15 O -0.978 6.978 16 N -1.105 6.105 17 C 0.256 3.744 18 H 0.091 0.909 19 C -0.156 4.156 20 C 0.188 3.812 21 N -0.263 5.263 22 N -0.268 5.268 23 C 0.167 3.833 24 N -0.488 5.488 25 C 0.102 3.898 26 C -0.126 4.126 27 C -0.039 4.039 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.424 0.576 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -13.635 8.050 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.828 5.828 4 C 0.095 3.905 5 C -0.580 4.580 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.517 5.517 9 Si 0.692 3.308 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.191 1.191 13 S 2.793 3.207 14 O -0.978 6.978 15 O -0.962 6.962 16 N -0.863 5.863 17 C 0.145 3.855 18 H 0.109 0.891 19 C -0.216 4.216 20 C -0.080 4.080 21 N -0.103 5.103 22 N -0.109 5.109 23 C -0.101 4.101 24 N -0.181 5.181 25 C -0.021 4.021 26 C -0.164 4.164 27 C -0.079 4.079 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.259 0.741 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.570 -11.985 8.549 14.733 hybrid contribution -0.823 -0.177 -1.129 1.408 sum -1.394 -12.162 7.420 14.315 Atomic orbital electron populations 1.22199 0.96631 1.01616 1.02415 1.21035 0.93922 0.82871 1.02025 1.57561 1.78756 1.22838 1.23651 1.19547 0.98331 0.91883 0.80720 1.21315 1.01334 1.24980 1.10349 0.90302 1.24816 0.94653 0.96192 0.96706 1.69905 1.19182 1.41926 1.20650 0.87035 0.81768 0.83217 0.78803 1.19820 1.21191 1.19089 1.01781 0.72706 0.73189 0.72981 1.93556 1.74723 1.73374 1.56137 1.93589 1.84188 1.32078 1.86354 1.55954 1.28353 1.13072 1.88970 1.18577 0.91085 0.84983 0.90889 0.89074 1.22175 1.02328 1.02650 0.94420 1.24398 1.01268 0.83506 0.98816 1.74241 1.03409 1.22669 1.09989 1.73947 1.22938 1.03080 1.10889 1.25669 0.90298 0.96933 0.97158 1.46971 1.25557 1.14128 1.31408 1.22412 0.98387 0.79295 1.01999 1.22807 0.96133 0.97265 1.00186 1.20584 1.02132 0.86931 0.98208 0.92084 0.92579 0.92106 0.90247 0.91856 0.94815 0.94272 0.92695 0.74134 0.90581 0.91721 0.90855 0.89240 0.88566 0.88095 0.89693 0.87797 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.13 2.01 6.09 -4.04 -0.02 1.99 16 3 N -0.99 -19.26 2.83 -115.66 -0.33 -19.59 16 4 C 0.22 5.06 4.51 -5.20 -0.02 5.03 16 5 C -0.54 -14.25 9.94 -34.44 -0.34 -14.59 16 6 H 0.08 2.20 7.68 -52.49 -0.40 1.80 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.88 -25.95 13.96 55.43 0.77 -25.18 16 9 Si 0.86 21.31 27.37 -169.99 -4.65 16.66 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.24 6.69 56.52 0.38 -5.86 16 13 S 2.79 54.00 5.97 -107.50 -0.64 53.35 16 14 O -0.99 -18.84 16.57 -57.17 -0.95 -19.79 16 15 O -0.98 -22.22 16.81 -57.17 -0.96 -23.18 16 16 N -1.11 -19.56 5.42 -5.88 -0.03 -19.59 16 17 C 0.26 3.98 3.44 -69.08 -0.24 3.74 16 18 H 0.09 1.27 6.77 -51.93 -0.35 0.92 16 19 C -0.16 -1.94 9.50 37.16 0.35 -1.58 16 20 C 0.19 3.40 6.77 -154.89 -1.05 2.35 16 21 N -0.26 -5.69 12.21 32.81 0.40 -5.29 16 22 N -0.27 -5.94 12.22 32.93 0.40 -5.54 16 23 C 0.17 3.00 8.69 -154.83 -1.35 1.65 16 24 N -0.49 -7.81 3.62 -109.19 -0.40 -8.20 16 25 C 0.10 1.08 7.78 -2.95 -0.02 1.05 16 26 C -0.13 -1.02 7.20 -24.97 -0.18 -1.20 16 27 C -0.04 -0.47 6.84 -26.74 -0.18 -0.65 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 32 H 0.06 0.87 6.49 -51.93 -0.34 0.53 16 33 H 0.03 0.76 7.51 -51.93 -0.39 0.37 16 34 H 0.04 0.97 6.14 -51.93 -0.32 0.65 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.42 7.56 8.96 -34.48 -0.31 7.25 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -36.96 382.02 -10.16 -47.12 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.76 Total: 5.53 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.77 Total: -2.06 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: 0.82 Total: -83.39 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.91 Total: -42.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.65 Total: 16.66 kcal Atomic # 16 Polarization: 54.00 SS G_CDS: -0.64 Total: 53.35 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.96 -10.16 -47.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337059721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.832 kcal (2) G-P(sol) polarization free energy of solvation -36.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds