Wall clock time and date at job start Wed Apr 1 2020 02:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47443 * 2 1 4 4 C 1.46504 * 119.99743 * 276.56887 * 3 2 1 5 5 C 1.50700 * 109.47116 * 274.99770 * 4 3 2 6 6 H 1.08005 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00294 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99780 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00369 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47199 * 90.00062 * 9 7 5 11 11 H 1.48506 * 109.47529 * 210.00111 * 9 7 5 12 12 H 1.48500 * 109.47073 * 329.99915 * 9 7 5 13 13 S 1.65599 * 120.00504 * 96.56579 * 3 2 1 14 14 O 1.42101 * 106.40365 * 162.38482 * 13 3 2 15 15 O 1.42095 * 106.40110 * 29.46679 * 13 3 2 16 16 N 1.65602 * 107.21841 * 275.92701 * 13 3 2 17 17 C 1.46501 * 120.00157 * 295.66247 * 16 13 3 18 18 H 1.09002 * 109.46640 * 24.41745 * 17 16 13 19 19 C 1.53156 * 109.46698 * 144.40628 * 17 16 13 20 20 C 1.53428 * 109.25097 * 189.17210 * 19 17 16 21 21 C 1.50923 * 108.19928 * 311.29337 * 20 19 17 22 22 N 1.30335 * 127.90055 * 196.02235 * 21 20 19 23 23 C 1.33467 * 109.72399 * 179.91148 * 22 21 20 24 24 C 1.50701 * 125.49796 * 180.02562 * 23 22 21 25 25 N 1.30980 * 109.00628 * 0.02562 * 23 22 21 26 26 N 1.34672 * 124.05272 * 15.97117 * 21 20 19 27 27 C 1.46302 * 125.04993 * 0.11118 * 26 21 20 28 28 H 1.09000 * 109.47421 * 184.70576 * 1 2 3 29 29 H 1.08998 * 109.47244 * 304.71173 * 1 2 3 30 30 H 1.09001 * 109.46647 * 64.70554 * 1 2 3 31 31 H 1.08997 * 109.47256 * 239.98951 * 2 1 3 32 32 H 1.09011 * 109.46566 * 119.99488 * 2 1 3 33 33 H 1.08994 * 109.46943 * 34.99973 * 4 3 2 34 34 H 1.09002 * 109.47449 * 154.99987 * 4 3 2 35 35 H 0.97003 * 119.99516 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99921 * 115.66704 * 16 13 3 37 37 H 1.08996 * 109.50993 * 309.11249 * 19 17 16 38 38 H 1.09003 * 109.50696 * 69.24667 * 19 17 16 39 39 H 1.08998 * 109.71627 * 70.97041 * 20 19 17 40 40 H 1.09008 * 109.71582 * 191.61244 * 20 19 17 41 41 H 1.09000 * 109.47293 * 89.97259 * 24 23 22 42 42 H 1.08999 * 109.47168 * 209.97680 * 24 23 22 43 43 H 1.09002 * 109.46860 * 329.97472 * 24 23 22 44 44 H 1.08996 * 109.58785 * 257.22731 * 27 26 21 45 45 H 1.08999 * 109.58825 * 136.80065 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1258 2.1201 -1.2605 5 6 3.4458 1.8060 -1.9160 6 1 4.1357 1.1237 -1.4415 7 6 3.7725 2.3886 -3.1221 8 7 2.9323 3.2189 -3.7003 9 14 5.4085 1.9987 -3.9351 10 1 5.2494 0.8235 -4.8289 11 1 5.8570 3.1692 -4.7315 12 1 6.4197 1.6935 -2.8913 13 16 2.4491 2.1072 1.4246 14 8 3.2449 3.2320 1.0773 15 8 2.9028 1.0695 2.2827 16 7 1.0646 2.7067 2.1074 17 6 0.3167 3.7709 1.4332 18 1 0.5302 3.7439 0.3646 19 6 -1.1836 3.5624 1.6594 20 6 -1.9692 4.5351 0.7702 21 6 -1.3812 5.9139 0.9457 22 7 -1.9089 7.0579 0.6115 23 6 -1.0758 8.0495 0.9337 24 6 -1.3320 9.5169 0.7051 25 7 0.0006 7.5416 1.4806 26 7 -0.1768 6.1554 1.4978 27 6 0.7362 5.1305 2.0039 28 1 -0.3634 -1.0242 0.0843 29 1 -0.3633 0.5852 0.8447 30 1 -0.3633 0.4391 -0.9292 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3119 1.8273 -1.9237 34 1 2.0648 3.1899 -1.0608 35 1 3.1624 3.6291 -4.5487 36 1 0.7489 2.3534 2.9538 37 1 -1.4514 2.5374 1.4030 38 1 -1.4236 3.7511 2.7058 39 1 -1.8853 4.2295 -0.2727 40 1 -3.0176 4.5415 1.0689 41 1 -1.8332 9.9383 1.5765 42 1 -0.3840 10.0310 0.5472 43 1 -1.9644 9.6426 -0.1739 44 1 0.6856 5.1012 3.0923 45 1 1.7542 5.3604 1.6895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337102268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:38 Heat of formation + Delta-G solvation = 4.556425 kcal Electronic energy + Delta-G solvation = -29566.659405 eV Core-core repulsion = 25554.536772 eV Total energy + Delta-G solvation = -4012.122634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.31421 -38.09368 -36.76451 -36.17030 -35.33911 -33.86739 -33.27240 -32.74142 -31.08391 -30.11054 -29.31549 -27.36362 -26.70223 -24.27526 -23.26538 -22.65789 -21.84585 -20.66590 -19.90799 -18.94393 -17.55375 -16.98774 -16.88006 -16.36701 -16.26218 -15.86545 -15.30078 -15.04123 -14.46301 -14.40205 -14.13243 -13.96551 -13.53955 -13.41090 -13.26359 -13.06812 -12.79580 -12.66655 -12.19656 -12.17302 -12.13315 -11.93586 -11.84448 -11.71538 -11.56237 -11.49816 -11.31676 -11.18346 -11.07621 -10.95327 -10.57855 -10.52679 -10.09630 -9.98705 -9.84746 -9.72687 -9.63394 -9.23877 -8.50703 -8.21548 -6.13059 -4.17607 0.98894 1.64455 2.25487 2.88989 3.26955 3.28223 3.34838 3.40077 3.83234 3.92616 4.13714 4.34524 4.39639 4.48903 4.66677 4.79317 4.87917 4.98946 5.13942 5.14798 5.24149 5.30207 5.39079 5.47416 5.48838 5.52581 5.61719 5.62666 5.68153 5.71163 5.82106 5.83539 5.95222 6.19102 6.37165 6.47348 6.49330 6.51715 6.77990 6.88931 7.12165 7.28777 7.50088 7.83923 8.12026 8.15943 8.84768 9.48539 10.95427 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004258 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.348763 B = 6573.769236 C = 7904.800415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.988 5.988 4 C 0.256 3.744 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.775 3.225 14 O -0.960 6.960 15 O -0.992 6.992 16 N -1.125 6.125 17 C 0.145 3.855 18 H 0.107 0.893 19 C -0.132 4.132 20 C -0.040 4.040 21 C 0.276 3.724 22 N -0.539 5.539 23 C 0.212 3.788 24 C -0.055 4.055 25 N -0.312 5.312 26 N -0.368 5.368 27 C 0.109 3.891 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.413 0.587 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.903 1.103 11.109 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.831 5.831 4 C 0.134 3.866 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 S 2.783 3.217 14 O -0.943 6.943 15 O -0.975 6.975 16 N -0.881 5.881 17 C 0.035 3.965 18 H 0.125 0.875 19 C -0.171 4.171 20 C -0.080 4.080 21 C -0.001 4.001 22 N -0.268 5.268 23 C -0.069 4.069 24 C -0.114 4.114 25 N -0.141 5.141 26 N -0.159 5.159 27 C -0.015 4.015 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.246 0.754 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.571 1.790 11.274 16.254 hybrid contribution 0.532 -0.526 -0.323 0.816 sum -11.038 1.264 10.951 15.600 Atomic orbital electron populations 1.22267 0.97095 1.01420 1.02208 1.21155 0.93140 0.83001 1.03619 1.57691 1.80826 1.21461 1.23121 1.19088 0.97799 0.90766 0.78911 1.21457 1.02794 1.27542 1.05422 0.92126 1.24917 0.97260 0.94692 0.96970 1.69908 1.35927 1.29574 1.17819 0.86523 0.83848 0.77879 0.79386 1.20546 1.21036 1.19693 1.02221 0.73158 0.73525 0.72790 1.93646 1.65242 1.52093 1.83320 1.93555 1.79089 1.57715 1.67190 1.56402 1.47512 1.48993 1.35162 1.20912 0.92359 0.84958 0.98239 0.87520 1.22084 0.92851 1.01239 1.00925 1.20372 1.00276 0.84568 1.02787 1.24276 0.84861 0.96997 0.93922 1.70144 1.32564 0.96874 1.27170 1.24391 0.88298 0.97674 0.96583 1.20050 1.03211 0.84954 1.03231 1.77955 1.23062 0.86994 1.26048 1.50049 1.14972 1.05043 1.45799 1.22507 0.94788 0.84273 0.99930 0.92203 0.93169 0.91875 0.89608 0.90701 0.94515 0.94538 0.92606 0.75427 0.88253 0.90324 0.87428 0.87389 0.90156 0.90064 0.89631 0.89001 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.23 37.16 0.38 -1.63 16 2 C 0.12 1.81 6.41 -4.04 -0.03 1.78 16 3 N -0.99 -18.41 2.83 -115.66 -0.33 -18.74 16 4 C 0.26 5.95 4.88 -5.19 -0.03 5.92 16 5 C -0.53 -14.38 9.38 -34.44 -0.32 -14.70 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 9 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 S 2.78 49.49 6.01 -107.50 -0.65 48.85 16 14 O -0.96 -21.23 16.47 -57.17 -0.94 -22.18 16 15 O -0.99 -19.05 16.82 -57.17 -0.96 -20.01 16 16 N -1.12 -13.45 5.53 -4.69 -0.03 -13.48 16 17 C 0.15 1.74 2.71 -67.69 -0.18 1.56 16 18 H 0.11 1.53 6.89 -51.93 -0.36 1.17 16 19 C -0.13 -1.09 5.50 -26.43 -0.15 -1.24 16 20 C -0.04 -0.38 6.33 -27.55 -0.17 -0.55 16 21 C 0.28 3.85 7.72 -155.78 -1.20 2.65 16 22 N -0.54 -8.29 11.18 -8.03 -0.09 -8.38 16 23 C 0.21 3.20 8.15 -156.43 -1.27 1.92 16 24 C -0.06 -0.57 10.51 36.01 0.38 -0.19 16 25 N -0.31 -5.19 12.74 32.50 0.41 -4.78 16 26 N -0.37 -5.58 4.04 -58.29 -0.24 -5.81 16 27 C 0.11 1.47 6.90 -3.99 -0.03 1.44 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.50 7.78 -51.93 -0.40 0.10 16 30 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.09 1.40 8.12 -51.93 -0.42 0.98 16 32 H 0.07 1.09 6.98 -51.92 -0.36 0.73 16 33 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.04 0.91 6.64 -51.93 -0.34 0.57 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.41 3.60 8.84 -34.47 -0.30 3.30 16 37 H 0.10 0.66 7.78 -51.93 -0.40 0.25 16 38 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.11 0.79 8.14 -51.92 -0.42 0.36 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.11 1.79 7.93 -51.93 -0.41 1.37 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -36.03 382.33 -10.83 -46.86 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.78 Total: 1.54 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.72 Total: -1.35 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: 0.47 Total: -75.94 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.90 Total: -42.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.65 Total: 48.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.03 -10.83 -46.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337102268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.421 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds