Wall clock time and date at job start Wed Apr 1 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47443 * 2 1 4 4 C 1.46504 * 119.99743 * 276.56887 * 3 2 1 5 5 C 1.50700 * 109.47116 * 274.99770 * 4 3 2 6 6 H 1.08005 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00294 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99780 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00369 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47199 * 90.00062 * 9 7 5 11 11 H 1.48506 * 109.47529 * 210.00111 * 9 7 5 12 12 H 1.48500 * 109.47073 * 329.99915 * 9 7 5 13 13 S 1.65599 * 120.00504 * 96.56579 * 3 2 1 14 14 O 1.42101 * 106.40365 * 162.38482 * 13 3 2 15 15 O 1.42095 * 106.40110 * 29.46679 * 13 3 2 16 16 N 1.65602 * 107.21841 * 275.92701 * 13 3 2 17 17 C 1.46501 * 120.00157 * 295.66247 * 16 13 3 18 18 H 1.09002 * 109.46640 * 24.41745 * 17 16 13 19 19 C 1.53156 * 109.46698 * 144.40628 * 17 16 13 20 20 C 1.53428 * 109.25097 * 189.17210 * 19 17 16 21 21 C 1.50923 * 108.19928 * 311.29337 * 20 19 17 22 22 N 1.30335 * 127.90055 * 196.02235 * 21 20 19 23 23 C 1.33467 * 109.72399 * 179.91148 * 22 21 20 24 24 C 1.50701 * 125.49796 * 180.02562 * 23 22 21 25 25 N 1.30980 * 109.00628 * 0.02562 * 23 22 21 26 26 N 1.34672 * 124.05272 * 15.97117 * 21 20 19 27 27 C 1.46302 * 125.04993 * 0.11118 * 26 21 20 28 28 H 1.09000 * 109.47421 * 184.70576 * 1 2 3 29 29 H 1.08998 * 109.47244 * 304.71173 * 1 2 3 30 30 H 1.09001 * 109.46647 * 64.70554 * 1 2 3 31 31 H 1.08997 * 109.47256 * 239.98951 * 2 1 3 32 32 H 1.09011 * 109.46566 * 119.99488 * 2 1 3 33 33 H 1.08994 * 109.46943 * 34.99973 * 4 3 2 34 34 H 1.09002 * 109.47449 * 154.99987 * 4 3 2 35 35 H 0.97003 * 119.99516 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99921 * 115.66704 * 16 13 3 37 37 H 1.08996 * 109.50993 * 309.11249 * 19 17 16 38 38 H 1.09003 * 109.50696 * 69.24667 * 19 17 16 39 39 H 1.08998 * 109.71627 * 70.97041 * 20 19 17 40 40 H 1.09008 * 109.71582 * 191.61244 * 20 19 17 41 41 H 1.09000 * 109.47293 * 89.97259 * 24 23 22 42 42 H 1.08999 * 109.47168 * 209.97680 * 24 23 22 43 43 H 1.09002 * 109.46860 * 329.97472 * 24 23 22 44 44 H 1.08996 * 109.58785 * 257.22731 * 27 26 21 45 45 H 1.08999 * 109.58825 * 136.80065 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1258 2.1201 -1.2605 5 6 3.4458 1.8060 -1.9160 6 1 4.1357 1.1237 -1.4415 7 6 3.7725 2.3886 -3.1221 8 7 2.9323 3.2189 -3.7003 9 14 5.4085 1.9987 -3.9351 10 1 5.2494 0.8235 -4.8289 11 1 5.8570 3.1692 -4.7315 12 1 6.4197 1.6935 -2.8913 13 16 2.4491 2.1072 1.4246 14 8 3.2449 3.2320 1.0773 15 8 2.9028 1.0695 2.2827 16 7 1.0646 2.7067 2.1074 17 6 0.3167 3.7709 1.4332 18 1 0.5302 3.7439 0.3646 19 6 -1.1836 3.5624 1.6594 20 6 -1.9692 4.5351 0.7702 21 6 -1.3812 5.9139 0.9457 22 7 -1.9089 7.0579 0.6115 23 6 -1.0758 8.0495 0.9337 24 6 -1.3320 9.5169 0.7051 25 7 0.0006 7.5416 1.4806 26 7 -0.1768 6.1554 1.4978 27 6 0.7362 5.1305 2.0039 28 1 -0.3634 -1.0242 0.0843 29 1 -0.3633 0.5852 0.8447 30 1 -0.3633 0.4391 -0.9292 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3119 1.8273 -1.9237 34 1 2.0648 3.1899 -1.0608 35 1 3.1624 3.6291 -4.5487 36 1 0.7489 2.3534 2.9538 37 1 -1.4514 2.5374 1.4030 38 1 -1.4236 3.7511 2.7058 39 1 -1.8853 4.2295 -0.2727 40 1 -3.0176 4.5415 1.0689 41 1 -1.8332 9.9383 1.5765 42 1 -0.3840 10.0310 0.5472 43 1 -1.9644 9.6426 -0.1739 44 1 0.6856 5.1012 3.0923 45 1 1.7542 5.3604 1.6895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337102268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:37 Heat of formation + Delta-G solvation = -22.474835 kcal Electronic energy + Delta-G solvation = -29567.831569 eV Core-core repulsion = 25554.536772 eV Total energy + Delta-G solvation = -4013.294797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.38450 -39.11429 -38.28545 -37.67396 -36.91819 -34.94822 -34.71402 -34.25360 -32.03945 -31.50752 -30.33839 -28.52550 -28.32445 -25.19917 -24.96112 -23.66457 -23.26477 -21.73389 -20.94128 -20.24405 -19.09679 -18.34210 -18.25246 -18.05360 -17.44727 -17.16633 -16.64276 -16.23163 -15.93956 -15.42999 -15.27977 -15.17029 -14.76028 -14.72507 -14.40136 -14.13795 -13.91313 -13.79183 -13.59076 -13.48915 -13.36913 -13.21990 -13.19572 -13.06724 -12.83262 -12.77985 -12.73749 -12.63160 -12.34944 -12.20342 -12.15483 -12.01491 -11.75542 -11.60282 -11.11967 -10.85667 -10.75563 -10.59096 -10.31392 -9.82722 -8.23138 -6.34322 -0.44138 0.56352 1.19921 1.35959 1.38731 1.48312 1.81065 1.96214 2.37369 2.57734 2.94189 3.08816 3.12837 3.37574 3.44518 3.65790 3.72414 3.85814 3.98910 4.12833 4.18196 4.33723 4.43920 4.51615 4.53556 4.68986 4.72489 4.75055 4.77319 4.87547 4.94894 4.99994 5.05990 5.11302 5.19483 5.20225 5.31079 5.47547 5.48135 5.54753 5.70323 5.78984 5.88723 6.09526 6.11454 6.74662 7.06142 7.35083 8.83819 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004258 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.348763 B = 6573.769236 C = 7904.800415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.993 5.993 4 C 0.276 3.724 5 C -0.551 4.551 6 H 0.051 0.949 7 C 0.015 3.985 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.275 1.275 13 S 2.792 3.208 14 O -1.010 7.010 15 O -1.005 7.005 16 N -1.097 6.097 17 C 0.147 3.853 18 H 0.080 0.920 19 C -0.120 4.120 20 C -0.039 4.039 21 C 0.273 3.727 22 N -0.562 5.562 23 C 0.204 3.796 24 C -0.054 4.054 25 N -0.356 5.356 26 N -0.380 5.380 27 C 0.107 3.893 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.033 0.967 34 H 0.014 0.986 35 H 0.266 0.734 36 H 0.434 0.566 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 -0.210 12.183 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.834 5.834 4 C 0.152 3.848 5 C -0.590 4.590 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.200 1.200 13 S 2.800 3.200 14 O -0.993 6.993 15 O -0.989 6.989 16 N -0.859 5.859 17 C 0.037 3.963 18 H 0.098 0.902 19 C -0.159 4.159 20 C -0.079 4.079 21 C -0.003 4.003 22 N -0.291 5.291 23 C -0.077 4.077 24 C -0.113 4.113 25 N -0.185 5.185 26 N -0.171 5.171 27 C -0.017 4.017 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.272 0.728 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.135 0.865 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.617 0.430 12.375 18.405 hybrid contribution 1.152 -0.108 -0.607 1.307 sum -12.464 0.323 11.768 17.145 Atomic orbital electron populations 1.22208 0.93768 1.03528 1.02723 1.21425 0.95992 0.81005 1.03381 1.57534 1.81476 1.22720 1.21690 1.18565 0.95910 0.89902 0.80404 1.21866 1.04231 1.27141 1.05783 0.93032 1.25673 1.00343 0.94696 0.97731 1.69998 1.37468 1.30499 1.18231 0.85672 0.80029 0.78206 0.78547 1.18885 1.20753 1.19959 1.01435 0.73595 0.72577 0.72406 1.93591 1.67692 1.53917 1.84092 1.93528 1.79997 1.58126 1.67210 1.55680 1.45988 1.48558 1.35713 1.20951 0.95014 0.83825 0.96535 0.90233 1.22118 0.88938 1.02479 1.02325 1.20663 1.01820 0.82079 1.03312 1.25209 0.84306 0.98448 0.92307 1.70194 1.33226 0.97513 1.28145 1.25225 0.87701 0.99393 0.95424 1.20235 1.03935 0.82513 1.04622 1.77884 1.24482 0.88164 1.27963 1.50131 1.15653 1.04775 1.46526 1.22556 0.92999 0.84778 1.01398 0.89569 0.90860 0.92852 0.91179 0.89670 0.94865 0.96840 0.92515 0.72827 0.85342 0.87759 0.87270 0.84240 0.88058 0.89593 0.88549 0.86502 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.23 71.98 0.74 -2.62 16 2 C 0.11 3.17 6.41 86.38 0.55 3.73 16 3 N -0.99 -36.94 2.83 -519.84 -1.47 -38.41 16 4 C 0.28 13.14 4.88 85.63 0.42 13.56 16 5 C -0.55 -30.44 9.38 25.60 0.24 -30.20 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.02 0.86 5.46 84.65 0.46 1.32 16 8 N -0.92 -53.67 13.29 21.45 0.28 -53.38 16 9 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 13 S 2.79 99.19 6.01 -56.49 -0.34 98.85 16 14 O -1.01 -46.38 16.47 -128.00 -2.11 -48.49 16 15 O -1.00 -37.63 16.82 -128.00 -2.15 -39.78 16 16 N -1.10 -24.30 5.53 -168.74 -0.93 -25.23 16 17 C 0.15 3.33 2.71 45.14 0.12 3.46 16 18 H 0.08 2.31 6.89 -2.39 -0.02 2.29 16 19 C -0.12 -1.54 5.50 30.79 0.17 -1.37 16 20 C -0.04 -0.63 6.33 30.06 0.19 -0.44 16 21 C 0.27 7.37 7.72 138.36 1.07 8.44 16 22 N -0.56 -16.94 11.18 -179.31 -2.01 -18.95 16 23 C 0.20 6.15 8.15 138.48 1.13 7.28 16 24 C -0.05 -1.08 10.51 71.24 0.75 -0.34 16 25 N -0.36 -12.13 12.74 -51.08 -0.65 -12.78 16 26 N -0.38 -11.58 4.04 -338.35 -1.37 -12.94 16 27 C 0.11 2.88 6.90 86.52 0.60 3.48 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.15 7.78 -2.39 -0.02 1.13 16 30 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 31 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 32 H 0.09 2.34 6.98 -2.38 -0.02 2.32 16 33 H 0.03 1.60 8.08 -2.39 -0.02 1.58 16 34 H 0.01 0.71 6.64 -2.39 -0.02 0.70 16 35 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.43 6.11 8.84 -96.74 -0.86 5.25 16 37 H 0.13 1.01 7.78 -2.39 -0.02 0.99 16 38 H 0.10 0.91 8.12 -2.39 -0.02 0.89 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.14 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.08 2.63 7.93 -2.39 -0.02 2.61 16 Total: -1.00 -81.74 382.33 -2.13 -83.86 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.15 Total: 14.46 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 6.43 Total: 6.30 kcal Atomic # 7 Polarization: -155.56 SS G_CDS: -6.14 Total: -161.70 kcal Atomic # 8 Polarization: -84.01 SS G_CDS: -4.26 Total: -88.27 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 99.19 SS G_CDS: -0.34 Total: 98.85 kcal Total: -81.74 -2.13 -83.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337102268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.388 kcal (2) G-P(sol) polarization free energy of solvation -81.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds