Wall clock time and date at job start Wed Apr 1 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47230 * 2 1 4 4 C 1.50698 * 109.47232 * 120.00397 * 2 1 3 5 5 H 1.07996 * 120.00175 * 120.00144 * 4 2 1 6 6 C 1.37877 * 119.99925 * 299.99789 * 4 2 1 7 7 N 1.31510 * 119.99990 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99957 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47356 * 60.00008 * 8 6 4 10 10 H 1.48505 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47312 * 300.00077 * 8 6 4 12 12 N 1.46508 * 109.47052 * 240.00054 * 2 1 3 13 13 C 1.46499 * 119.99836 * 300.00277 * 12 2 1 14 14 S 1.65598 * 119.99657 * 119.99435 * 12 2 1 15 15 O 1.42099 * 106.40444 * 336.46417 * 14 12 2 16 16 O 1.42098 * 106.40088 * 203.54326 * 14 12 2 17 17 N 1.65604 * 107.21609 * 90.00373 * 14 12 2 18 18 C 1.46504 * 120.00036 * 64.99731 * 17 14 12 19 19 C 1.50691 * 109.47094 * 165.00090 * 18 17 14 20 20 C 1.38628 * 120.40307 * 95.00534 * 19 18 17 21 21 C 1.38584 * 118.56035 * 180.02562 * 20 19 18 22 22 N 1.32289 * 119.19767 * 359.97438 * 21 20 19 23 23 C 1.32484 * 120.73975 * 0.02562 * 22 21 20 24 24 N 1.38411 * 119.21332 * 180.02562 * 23 22 21 25 25 C 1.46499 * 120.00229 * 359.97438 * 24 23 22 26 26 C 1.46502 * 119.99709 * 179.97438 * 24 23 22 27 27 N 1.32262 * 120.40224 * 275.29061 * 19 18 17 28 28 H 1.08996 * 109.47518 * 60.00080 * 1 2 3 29 29 H 1.09002 * 109.46772 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46993 * 299.99229 * 1 2 3 31 31 H 0.97005 * 120.00314 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46676 * 269.99653 * 13 12 2 33 33 H 1.08995 * 109.47249 * 29.99583 * 13 12 2 34 34 H 1.08997 * 109.46760 * 150.00166 * 13 12 2 35 35 H 0.96998 * 120.00212 * 244.99905 * 17 14 12 36 36 H 1.08997 * 109.46972 * 44.99814 * 18 17 14 37 37 H 1.09001 * 109.47307 * 285.00314 * 18 17 14 38 38 H 1.08004 * 120.71955 * 359.97438 * 20 19 18 39 39 H 1.07994 * 120.40210 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47391 * 270.00484 * 25 24 23 41 41 H 1.09001 * 109.46813 * 150.00540 * 25 24 23 42 42 H 1.09004 * 109.47041 * 30.00667 * 25 24 23 43 43 H 1.09001 * 109.47274 * 179.97438 * 26 24 23 44 44 H 1.09000 * 109.47166 * 299.99802 * 26 24 23 45 45 H 1.09004 * 109.47230 * 59.99753 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8076 -1.1192 4.0076 10 1 1.8281 -0.4195 5.2205 11 1 1.8282 -2.5200 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.6902 1.4973 -2.1193 16 8 2.8226 -0.5644 -3.5260 17 7 4.5437 -0.1041 -1.8182 18 6 5.1357 -1.4440 -1.8417 19 6 6.6348 -1.3327 -1.7354 20 6 7.2607 -1.4410 -0.5032 21 6 8.6412 -1.3322 -0.4495 22 7 9.3166 -1.1300 -1.5688 23 6 8.6878 -1.0310 -2.7307 24 7 9.4259 -0.8199 -3.8824 25 6 10.8846 -0.7079 -3.8074 26 6 8.7482 -0.7084 -5.1765 27 7 7.3688 -1.1248 -2.8158 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.7096 1.1617 3.4845 32 1 2.4157 -2.7377 -0.9718 33 1 0.6904 -2.3002 -0.9847 34 1 1.6238 -2.2851 -2.5003 35 1 5.0733 0.6551 -1.5283 36 1 4.8736 -1.9406 -2.7759 37 1 4.7540 -2.0247 -1.0020 38 1 6.6848 -1.6058 0.3955 39 1 9.1594 -1.4124 0.4946 40 1 11.1617 0.3356 -3.6568 41 1 11.3251 -1.0703 -4.7363 42 1 11.2525 -1.3055 -2.9733 43 1 9.4872 -0.5444 -5.9607 44 1 8.2000 -1.6283 -5.3800 45 1 8.0531 0.1309 -5.1515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337779591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:45 Heat of formation + Delta-G solvation = -25.865591 kcal Electronic energy + Delta-G solvation = -28726.403909 eV Core-core repulsion = 24712.962078 eV Total energy + Delta-G solvation = -4013.441831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00616 -38.38318 -37.98616 -37.84122 -36.91998 -36.54113 -34.46327 -34.25542 -32.18844 -30.87388 -29.24196 -27.70960 -27.24099 -26.90646 -26.72955 -23.96785 -22.62785 -22.50310 -20.41226 -18.97109 -18.73816 -18.58022 -18.22480 -18.05955 -17.29315 -16.79396 -16.61025 -16.34907 -15.94324 -15.55244 -15.17171 -15.15226 -14.85833 -14.77963 -14.56284 -14.51056 -13.92085 -13.62518 -13.48993 -13.43727 -13.27663 -13.19763 -13.14271 -13.03479 -12.87511 -12.77701 -12.70980 -12.56292 -12.20795 -12.11886 -11.94473 -11.82539 -11.71822 -11.17135 -11.13859 -10.56910 -10.43641 -10.12463 -9.63107 -8.88458 -8.03439 -6.18430 -0.41296 0.13344 0.24530 1.52090 1.52843 1.59893 1.71430 2.02269 2.50870 2.58535 2.91131 2.98782 3.25491 3.41335 3.53814 3.67509 4.03727 4.15533 4.28403 4.36530 4.43236 4.45445 4.50253 4.55867 4.71918 4.75835 4.78830 4.83910 4.89759 4.90983 4.94057 4.99957 5.09447 5.21339 5.22517 5.34531 5.65160 5.71997 5.86792 5.88491 5.90767 5.98485 6.15602 6.34208 6.40334 6.91161 7.26441 7.51580 9.01020 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.003549 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.802312 B = 7888.228665 C = 9436.744682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.273 3.727 3 H 0.023 0.977 4 C -0.526 4.526 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.295 1.295 11 H -0.269 1.269 12 N -0.993 5.993 13 C 0.089 3.911 14 S 2.803 3.197 15 O -1.017 7.017 16 O -1.004 7.004 17 N -1.113 6.113 18 C 0.172 3.828 19 C 0.198 3.802 20 C -0.271 4.271 21 C 0.191 3.809 22 N -0.578 5.578 23 C 0.538 3.462 24 N -0.601 5.601 25 C 0.104 3.896 26 C 0.108 3.892 27 N -0.576 5.576 28 H 0.018 0.982 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.417 0.583 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.166 0.834 39 H 0.204 0.796 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.954 -7.720 -8.795 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.565 4.565 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.222 1.222 11 H -0.194 1.194 12 N -0.835 5.835 13 C -0.056 4.056 14 S 2.812 3.188 15 O -1.001 7.001 16 O -0.987 6.987 17 N -0.874 5.874 18 C 0.046 3.954 19 C 0.049 3.951 20 C -0.297 4.297 21 C 0.024 3.976 22 N -0.301 5.301 23 C 0.182 3.818 24 N -0.319 5.319 25 C -0.039 4.039 26 C -0.035 4.035 27 N -0.300 5.300 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.184 0.816 39 H 0.221 0.779 40 H 0.071 0.929 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.126 0.874 44 H 0.071 0.929 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.114 -7.097 -10.560 21.325 hybrid contribution -0.261 0.071 2.127 2.144 sum 16.852 -7.026 -8.434 20.112 Atomic orbital electron populations 1.21970 0.98037 1.00193 0.99910 1.18409 0.91855 0.91390 0.81473 0.95884 1.21628 1.31476 1.13101 0.90332 0.90624 1.25717 0.95259 0.95586 1.01968 1.70024 1.37664 1.24171 1.24257 0.85598 0.79021 0.78611 0.78284 1.19087 1.22156 1.19410 1.57538 1.64829 1.22667 1.38469 1.21546 1.02657 0.80174 1.01220 1.01032 0.72783 0.72035 0.72997 1.93545 1.84402 1.34899 1.87297 1.93517 1.86350 1.76279 1.42548 1.55674 1.30996 1.15323 1.85371 1.20220 0.86861 0.83766 1.04568 1.21337 0.95557 0.89585 0.88619 1.22744 0.97492 1.09629 0.99812 1.23559 0.91146 0.86367 0.96519 1.67969 1.41259 1.22299 0.98559 1.19611 0.85322 0.89494 0.87345 1.46207 1.06970 1.75247 1.03458 1.21771 0.76189 1.01893 1.03999 1.21652 0.98034 1.01403 0.82392 1.67684 1.06027 1.22123 1.34186 0.96332 0.93387 0.91237 0.92922 0.91590 0.90657 0.90516 0.74956 0.88841 0.87475 0.81620 0.77913 0.92903 0.88610 0.90956 0.87448 0.92870 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 8.95 71.98 0.64 -5.99 16 2 C 0.27 12.99 2.62 44.24 0.12 13.11 16 3 H 0.02 1.27 6.91 -2.39 -0.02 1.25 16 4 C -0.53 -25.50 8.37 25.60 0.21 -25.28 16 5 H 0.08 3.39 7.65 -2.91 -0.02 3.37 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -50.41 11.32 21.45 0.24 -50.17 16 8 Si 0.96 39.71 29.54 68.60 2.03 41.74 16 9 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.30 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 12 N -0.99 -38.83 3.12 -520.44 -1.62 -40.45 16 13 C 0.09 2.83 9.90 127.77 1.27 4.10 16 14 S 2.80 107.87 6.14 -56.49 -0.35 107.52 16 15 O -1.02 -47.27 16.70 -128.00 -2.14 -49.41 16 16 O -1.00 -39.79 16.21 -128.00 -2.07 -41.87 16 17 N -1.11 -35.18 6.05 -190.80 -1.15 -36.33 16 18 C 0.17 4.59 6.60 85.63 0.56 5.15 16 19 C 0.20 5.22 6.22 42.58 0.26 5.48 16 20 C -0.27 -5.95 9.83 22.45 0.22 -5.73 16 21 C 0.19 3.85 11.30 84.71 0.96 4.81 16 22 N -0.58 -14.06 9.11 -197.99 -1.80 -15.86 16 23 C 0.54 14.31 8.18 261.48 2.14 16.45 16 24 N -0.60 -12.80 3.37 -761.00 -2.57 -15.37 16 25 C 0.10 1.50 10.41 127.77 1.33 2.83 16 26 C 0.11 1.90 10.14 127.77 1.30 3.19 16 27 N -0.58 -16.54 9.52 -186.03 -1.77 -18.31 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 2.05 6.66 -2.39 -0.02 2.04 16 30 H 0.07 3.61 6.07 -2.38 -0.01 3.60 16 31 H 0.26 13.77 8.31 -92.70 -0.77 13.00 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.41 6.43 -2.39 -0.02 2.39 16 34 H 0.08 2.21 7.02 -2.39 -0.02 2.19 16 35 H 0.42 12.74 8.64 -96.74 -0.84 11.91 16 36 H 0.09 2.49 7.75 -2.39 -0.02 2.47 16 37 H 0.11 2.47 8.06 -2.39 -0.02 2.45 16 38 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.82 7.92 -2.39 -0.02 0.80 16 42 H 0.07 1.16 7.33 -2.38 -0.02 1.14 16 43 H 0.11 1.10 7.79 -2.39 -0.02 1.08 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.90 383.60 -1.58 -72.48 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.18 Total: 26.76 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 9.46 Total: 19.28 kcal Atomic # 7 Polarization: -167.82 SS G_CDS: -8.68 Total: -176.50 kcal Atomic # 8 Polarization: -87.07 SS G_CDS: -4.21 Total: -91.28 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 16 Polarization: 107.87 SS G_CDS: -0.35 Total: 107.52 kcal Total: -70.90 -1.58 -72.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337779591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.617 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds