Wall clock time and date at job start Wed Apr 1 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 120.00084 * 2 1 4 4 C 1.50702 * 109.47499 * 275.00455 * 3 2 1 5 5 H 1.08003 * 119.99681 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00040 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99905 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99815 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47083 * 60.00147 * 8 6 4 10 10 H 1.48498 * 109.47260 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47283 * 300.00220 * 8 6 4 12 12 S 1.65599 * 120.00088 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40047 * 336.45534 * 12 2 1 14 14 O 1.42102 * 106.40428 * 203.53881 * 12 2 1 15 15 N 1.65598 * 107.21961 * 89.99673 * 12 2 1 16 16 C 1.46926 * 120.63220 * 90.00143 * 15 12 2 17 17 C 1.53193 * 108.77647 * 233.58898 * 16 15 12 18 18 C 1.53045 * 109.30949 * 305.36127 * 17 16 15 19 19 C 1.53004 * 109.45759 * 181.38587 * 18 17 16 20 20 N 1.46498 * 109.47171 * 175.00093 * 19 18 17 21 21 C 1.35308 * 125.86965 * 124.99697 * 20 19 18 22 22 C 1.35347 * 106.17713 * 179.97438 * 21 20 19 23 23 N 1.33774 * 106.49812 * 0.02562 * 22 21 20 24 24 N 1.28637 * 108.88333 * 0.02562 * 23 22 21 25 25 C 1.53043 * 109.53802 * 61.36539 * 18 17 16 26 26 C 1.46928 * 120.63059 * 269.97572 * 15 12 2 27 27 H 1.08999 * 109.46813 * 269.99873 * 1 2 3 28 28 H 1.08992 * 109.46967 * 29.99536 * 1 2 3 29 29 H 1.08994 * 109.46936 * 149.99669 * 1 2 3 30 30 H 1.09002 * 109.46825 * 35.00383 * 3 2 1 31 31 H 1.09003 * 109.47156 * 155.00225 * 3 2 1 32 32 H 0.97008 * 119.99369 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.59003 * 113.79780 * 16 15 12 34 34 H 1.09007 * 109.69866 * 353.44497 * 16 15 12 35 35 H 1.08997 * 109.49736 * 185.41300 * 17 16 15 36 36 H 1.08995 * 109.49803 * 65.31289 * 17 16 15 37 37 H 1.09000 * 109.46116 * 301.35819 * 18 17 16 38 38 H 1.09002 * 109.46649 * 55.00127 * 19 18 17 39 39 H 1.09000 * 109.47178 * 295.00404 * 19 18 17 40 40 H 1.07997 * 126.91159 * 359.97438 * 21 20 19 41 41 H 1.08002 * 126.75518 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.49159 * 58.58647 * 25 18 17 43 43 H 1.09000 * 109.49391 * 178.67708 * 25 18 17 44 44 H 1.08998 * 109.58720 * 246.20155 * 26 15 12 45 45 H 1.08997 * 109.58918 * 6.62990 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7658 -1.4154 5 1 1.9289 1.1936 -2.2332 6 6 2.9998 2.9510 -1.6662 7 7 3.5026 3.6474 -0.6704 8 14 3.1787 3.5667 -3.4208 9 1 1.8325 3.7718 -4.0131 10 1 3.9211 4.8528 -3.4207 11 1 3.9253 2.5648 -4.2233 12 16 2.2931 -1.4341 -0.0006 13 8 1.4114 -2.4067 0.5435 14 8 3.5760 -1.1570 0.5439 15 7 2.5381 -1.8580 -1.5826 16 6 3.7437 -1.4175 -2.2975 17 6 3.3206 -0.7129 -3.5903 18 6 2.4142 -1.6429 -4.4002 19 6 2.0175 -0.9557 -5.7084 20 7 1.2493 -1.8885 -6.5366 21 6 0.0166 -1.6647 -7.0477 22 6 -0.3115 -2.7790 -7.7424 23 7 0.7226 -3.6192 -7.6234 24 7 1.6306 -3.0623 -6.9023 25 6 1.1556 -1.9635 -3.5906 26 6 1.5543 -2.6822 -2.2978 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6502 2.0042 0.5895 31 1 3.1859 1.1177 0.4343 32 1 3.9654 4.4815 -0.8469 33 1 4.3623 -2.2821 -2.5382 34 1 4.3094 -0.7261 -1.6728 35 1 4.2057 -0.4663 -4.1767 36 1 2.7791 0.2009 -3.3461 37 1 2.9478 -2.5669 -4.6226 38 1 2.9156 -0.6488 -6.2444 39 1 1.4084 -0.0790 -5.4881 40 1 -0.5845 -0.7758 -6.9259 41 1 -1.2283 -2.9555 -8.2853 42 1 0.6346 -1.0378 -3.3465 43 1 0.4998 -2.6068 -4.1773 44 1 1.9942 -3.6500 -2.5384 45 1 0.6730 -2.8245 -1.6723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338145133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:41 Heat of formation + Delta-G solvation = 2.450476 kcal Electronic energy + Delta-G solvation = -30107.284069 eV Core-core repulsion = 26095.070114 eV Total energy + Delta-G solvation = -4012.213954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.11053 -39.79985 -38.38845 -37.16428 -36.90760 -36.16797 -34.41177 -33.26450 -32.04765 -31.86060 -29.59013 -28.53283 -26.74433 -24.72001 -24.35079 -24.11694 -23.50944 -22.27432 -21.13626 -19.81370 -18.83951 -18.52698 -18.35018 -18.16549 -17.37006 -17.28695 -16.42371 -15.84569 -15.73648 -15.57080 -15.32079 -15.15726 -15.08410 -14.86943 -14.69086 -14.33037 -14.01725 -13.89601 -13.68955 -13.39593 -13.31943 -13.07856 -12.95116 -12.92092 -12.82526 -12.67628 -12.49135 -12.32650 -12.20044 -12.06642 -11.94389 -11.75234 -11.66776 -11.51761 -11.23967 -10.92124 -10.49118 -10.24102 -10.00662 -9.68071 -8.08260 -6.21781 -0.32493 0.77454 1.48785 1.51472 1.53967 1.58818 1.71753 1.96621 2.48707 2.57483 3.24392 3.35774 3.41925 3.59985 3.71773 3.82818 3.95223 4.14098 4.17388 4.22465 4.34524 4.38721 4.42156 4.47571 4.51376 4.64866 4.72020 4.77242 4.80097 4.82599 4.92766 4.94668 4.98353 5.07863 5.17570 5.27708 5.32436 5.36591 5.46550 5.56082 5.66265 5.75775 5.86448 5.99643 6.19876 6.90581 7.48025 7.62795 9.00292 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.004976 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.936195 B = 5626.174616 C = 7323.287741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.001 6.001 3 C 0.257 3.743 4 C -0.530 4.530 5 H 0.090 0.910 6 C 0.011 3.989 7 N -0.935 5.935 8 Si 0.946 3.054 9 H -0.261 1.261 10 H -0.303 1.303 11 H -0.244 1.244 12 S 2.795 3.205 13 O -1.008 7.008 14 O -1.015 7.015 15 N -0.997 5.997 16 C 0.129 3.871 17 C -0.132 4.132 18 C -0.086 4.086 19 C 0.113 3.887 20 N -0.281 5.281 21 C -0.039 4.039 22 C -0.065 4.065 23 N -0.317 5.317 24 N -0.120 5.120 25 C -0.120 4.120 26 C 0.123 3.877 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.261 0.739 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.226 0.774 41 H 0.214 0.786 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -7.237 -12.327 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.843 5.843 3 C 0.133 3.867 4 C -0.569 4.569 5 H 0.107 0.893 6 C -0.188 4.188 7 N -0.575 5.575 8 Si 0.770 3.230 9 H -0.186 1.186 10 H -0.230 1.230 11 H -0.168 1.168 12 S 2.805 3.195 13 O -0.992 6.992 14 O -1.000 7.000 15 N -0.838 5.838 16 C 0.003 3.997 17 C -0.171 4.171 18 C -0.105 4.105 19 C -0.007 4.007 20 N -0.074 5.074 21 C -0.191 4.191 22 C -0.223 4.223 23 N -0.182 5.182 24 N -0.099 5.099 25 C -0.159 4.159 26 C -0.002 4.002 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.243 0.757 41 H 0.231 0.769 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.432 -8.630 -11.408 15.684 hybrid contribution -0.522 1.868 -0.526 2.009 sum -6.954 -6.762 -11.934 15.379 Atomic orbital electron populations 1.21430 0.78136 1.03342 1.01645 1.57569 1.15496 1.22086 1.89115 1.18804 0.90507 0.79887 0.97486 1.21855 1.35519 1.06354 0.93154 0.89257 1.25820 0.95093 0.96915 1.00955 1.70095 1.38186 1.15674 1.33528 0.85793 0.78948 0.77772 0.80467 1.18597 1.23012 1.16768 1.01279 0.72137 0.72385 0.73685 1.93509 1.67459 1.60422 1.77826 1.93519 1.42778 1.85736 1.77918 1.57953 1.30270 1.64856 1.30729 1.21339 0.85353 0.99117 0.93850 1.22036 1.00613 0.99132 0.95328 1.21286 0.97027 0.99653 0.92535 1.22499 0.97905 0.90195 0.90137 1.47690 1.13612 1.12570 1.33563 1.24364 0.88555 1.04390 1.01742 1.24168 1.01221 0.91622 1.05310 1.75071 1.01269 1.27382 1.14460 1.78250 1.22617 0.94675 1.14383 1.21884 0.97082 1.01469 0.95475 1.21466 0.91289 0.93696 0.93784 0.93156 0.90335 0.90603 0.96733 0.96842 0.92972 0.89997 0.91066 0.89249 0.90002 0.89754 0.87057 0.85276 0.75749 0.76944 0.90442 0.91115 0.90428 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.07 10.31 127.77 1.32 4.39 16 2 N -1.00 -38.69 3.23 -543.22 -1.75 -40.45 16 3 C 0.26 12.16 5.41 85.63 0.46 12.63 16 4 C -0.53 -24.27 8.99 25.60 0.23 -24.04 16 5 H 0.09 3.61 5.51 -2.91 -0.02 3.59 16 6 C 0.01 0.54 5.46 84.65 0.46 1.00 16 7 N -0.93 -51.29 13.29 21.45 0.28 -51.00 16 8 Si 0.95 36.28 29.54 68.60 2.03 38.30 16 9 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 10 H -0.30 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 12 S 2.80 107.12 6.07 -56.49 -0.34 106.77 16 13 O -1.01 -39.61 15.93 -128.00 -2.04 -41.65 16 14 O -1.02 -47.04 15.41 -128.00 -1.97 -49.02 16 15 N -1.00 -30.10 3.35 -513.06 -1.72 -31.82 16 16 C 0.13 3.70 6.37 86.36 0.55 4.25 16 17 C -0.13 -3.14 5.36 30.67 0.16 -2.98 16 18 C -0.09 -1.66 2.20 -10.76 -0.02 -1.68 16 19 C 0.11 1.77 5.85 86.38 0.50 2.28 16 20 N -0.28 -5.24 2.87 -347.74 -1.00 -6.24 16 21 C -0.04 -0.56 11.57 83.49 0.97 0.41 16 22 C -0.07 -1.13 12.05 83.73 1.01 -0.12 16 23 N -0.32 -8.18 12.41 -58.26 -0.72 -8.90 16 24 N -0.12 -3.05 12.82 37.02 0.47 -2.57 16 25 C -0.12 -2.40 5.26 30.67 0.16 -2.24 16 26 C 0.12 2.94 6.38 86.36 0.55 3.49 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 29 H 0.08 1.93 7.79 -2.39 -0.02 1.92 16 30 H 0.01 0.74 8.11 -2.39 -0.02 0.72 16 31 H 0.01 0.74 6.92 -2.39 -0.02 0.72 16 32 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.50 7.13 -2.38 -0.02 2.49 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.28 5.30 -2.39 -0.01 2.27 16 37 H 0.08 1.75 8.00 -2.39 -0.02 1.73 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.13 1.54 8.07 -2.39 -0.02 1.52 16 40 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.36 7.72 -2.39 -0.02 1.34 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 2.07 7.13 -2.39 -0.02 2.06 16 Total: -1.00 -70.52 374.44 0.59 -69.93 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.99 Total: 19.25 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 6.36 Total: -2.62 kcal Atomic # 7 Polarization: -136.55 SS G_CDS: -4.43 Total: -140.98 kcal Atomic # 8 Polarization: -86.65 SS G_CDS: -4.01 Total: -90.66 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 16 Polarization: 107.12 SS G_CDS: -0.34 Total: 106.77 kcal Total: -70.52 0.59 -69.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338145133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.380 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds