Wall clock time and date at job start Wed Apr 1 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48499 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46902 * 300.00270 * 3 2 1 6 6 H 1.48495 * 109.46874 * 60.00095 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47429 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47181 * 179.97438 * 10 9 7 12 12 S 1.81408 * 109.47061 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54002 * 68.37800 * 12 11 10 14 14 O 1.42100 * 110.54293 * 291.62413 * 12 11 10 15 15 N 1.65598 * 104.44984 * 179.97438 * 12 11 10 16 16 C 1.47677 * 134.45421 * 275.46134 * 15 12 11 17 17 C 1.53414 * 85.95318 * 204.29541 * 16 15 12 18 18 C 1.52750 * 113.68606 * 222.08227 * 17 16 15 19 19 C 1.53290 * 108.97156 * 281.75062 * 18 17 16 20 20 O 1.42896 * 109.30865 * 304.75442 * 19 18 17 21 21 C 1.42893 * 114.39433 * 63.04210 * 20 19 18 22 22 C 1.53001 * 113.72229 * 91.45539 * 17 16 15 23 23 C 1.47690 * 134.44515 * 95.52170 * 15 12 11 24 24 H 1.08999 * 113.90416 * 269.97357 * 23 15 12 25 25 C 1.53000 * 113.79468 * 41.44478 * 23 15 12 26 26 C 1.52995 * 117.50002 * 230.37128 * 25 23 15 27 27 C 1.52998 * 117.49935 * 161.70967 * 25 23 15 28 28 H 0.96998 * 119.99656 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47206 * 59.99615 * 9 7 2 30 30 H 1.09001 * 109.47000 * 300.00145 * 9 7 2 31 31 H 1.09002 * 109.47181 * 59.99673 * 10 9 7 32 32 H 1.09008 * 109.47010 * 300.00454 * 10 9 7 33 33 H 1.08996 * 109.47480 * 60.00173 * 11 10 9 34 34 H 1.08999 * 109.47245 * 299.99623 * 11 10 9 35 35 H 1.09006 * 113.79737 * 90.03033 * 16 15 12 36 36 H 1.09003 * 113.79056 * 318.55388 * 16 15 12 37 37 H 1.09001 * 109.56532 * 161.87325 * 18 17 16 38 38 H 1.09001 * 109.56986 * 41.63090 * 18 17 16 39 39 H 1.08996 * 109.49792 * 64.70754 * 19 18 17 40 40 H 1.08999 * 109.49193 * 184.77035 * 19 18 17 41 41 H 1.08995 * 109.49653 * 56.92279 * 21 20 19 42 42 H 1.09000 * 109.49395 * 176.98407 * 21 20 19 43 43 H 1.09006 * 109.53315 * 318.42653 * 22 17 16 44 44 H 1.08999 * 109.64947 * 198.16309 * 22 17 16 45 45 H 1.09008 * 115.55186 * 16.04094 * 25 23 15 46 46 H 1.09005 * 117.49498 * 359.97438 * 26 25 23 47 47 H 1.09003 * 117.50203 * 145.01675 * 26 25 23 48 48 H 1.09006 * 117.49925 * 214.97621 * 27 25 23 49 49 H 1.08993 * 117.50042 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9870 -0.0012 12 16 2.6591 -6.3659 -0.0035 13 8 3.3576 -6.4267 1.2325 14 8 3.3539 -6.4258 -1.2415 15 7 1.7087 -7.7220 -0.0018 16 6 1.0349 -8.5115 1.0487 17 6 1.1007 -9.6820 0.0591 18 6 -0.1789 -10.5146 0.0075 19 6 -0.2136 -11.4506 1.2210 20 8 0.9804 -12.2352 1.2468 21 6 2.1811 -11.4775 1.4087 22 6 2.3568 -10.5429 0.2065 23 6 1.1963 -8.6271 -1.0505 24 1 0.2304 -8.3287 -1.4581 25 6 2.2242 -8.9617 -2.1333 26 6 1.7961 -8.7871 -3.5917 27 6 1.9581 -10.1912 -3.0041 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8726 -3.6048 0.8877 32 1 2.8713 -3.6040 -0.8923 33 1 0.8526 -5.0447 -0.8904 34 1 0.8546 -5.0450 0.8895 35 1 0.0208 -8.1772 1.2678 36 1 1.6390 -8.6582 1.9440 37 1 -0.1940 -11.1043 -0.9091 38 1 -1.0456 -9.8540 0.0310 39 1 -0.2805 -10.8597 2.1344 40 1 -1.0801 -12.1079 1.1486 41 1 2.1180 -10.8869 2.3226 42 1 3.0329 -12.1547 1.4713 43 1 3.2224 -9.9001 0.3673 44 1 2.5041 -11.1342 -0.6972 45 1 3.2610 -8.7372 -1.8828 46 1 0.7821 -8.4342 -3.7798 47 1 2.5514 -8.4480 -4.3008 48 1 2.8199 -10.7754 -3.3269 49 1 1.0511 -10.7620 -2.8054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339080177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:23 Heat of formation + Delta-G solvation = -75.057547 kcal Electronic energy + Delta-G solvation = -29269.420566 eV Core-core repulsion = 25325.093204 eV Total energy + Delta-G solvation = -3944.327362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26202 -38.24508 -36.90831 -36.39396 -35.71895 -34.67655 -32.32745 -32.19684 -31.51397 -27.84856 -27.16704 -26.57065 -24.13538 -23.70908 -23.16136 -22.31192 -21.12610 -20.51925 -19.06089 -18.52343 -17.47822 -16.69198 -16.37973 -16.30144 -16.20075 -15.88527 -15.50986 -15.17203 -15.00338 -14.68030 -14.49129 -14.26142 -13.99819 -13.45291 -13.17460 -12.91972 -12.62681 -12.57701 -12.30875 -12.27526 -11.93505 -11.81148 -11.77518 -11.75158 -11.60999 -11.54882 -11.26647 -11.17135 -10.95118 -10.92125 -10.84341 -10.65483 -10.42556 -10.25717 -10.18300 -9.97614 -9.67258 -9.55075 -9.24659 -8.92990 -8.42959 -6.07620 -4.10651 0.41648 2.60492 3.27920 3.35370 3.40467 3.52185 3.60465 3.90723 3.97543 4.19663 4.22494 4.35790 4.41212 4.55174 4.57957 4.68487 4.79874 4.82281 4.89886 5.03334 5.10108 5.11050 5.15445 5.22669 5.26505 5.28829 5.29546 5.35109 5.38525 5.43667 5.45097 5.61795 5.75521 5.76402 5.83524 5.85877 5.87837 5.96196 5.99485 6.11829 6.26503 6.37293 6.43255 6.85472 6.90107 7.54941 7.64652 7.90500 8.31004 8.95759 9.54169 11.03696 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002572 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.356370 B =10884.091968 C =11280.265940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.613 4.613 12 S 2.611 3.389 13 O -0.959 6.959 14 O -0.950 6.950 15 N -1.031 6.031 16 C 0.125 3.875 17 C -0.081 4.081 18 C -0.142 4.142 19 C 0.062 3.938 20 O -0.384 6.384 21 C 0.060 3.940 22 C -0.128 4.128 23 C 0.197 3.803 24 H 0.095 0.905 25 C -0.158 4.158 26 C -0.173 4.173 27 C -0.170 4.170 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -26.720 -0.925 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.744 4.744 12 S 2.710 3.290 13 O -0.950 6.950 14 O -0.941 6.941 15 N -0.867 5.867 16 C 0.000 4.000 17 C -0.083 4.083 18 C -0.181 4.181 19 C -0.015 4.015 20 O -0.302 6.302 21 C -0.016 4.016 22 C -0.166 4.166 23 C 0.091 3.909 24 H 0.113 0.887 25 C -0.177 4.177 26 C -0.210 4.210 27 C -0.208 4.208 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.706 -26.601 -0.925 26.627 hybrid contribution -0.366 1.859 -0.023 1.895 sum -1.072 -24.742 -0.948 24.783 Atomic orbital electron populations 1.69971 1.06100 1.26677 1.50704 1.25028 0.94897 0.99404 0.95089 0.86493 0.80197 0.83466 0.77640 1.19586 1.20911 1.20908 1.21294 0.93289 0.90878 1.50923 0.92325 1.19060 0.93518 0.90488 0.97665 1.21489 0.99376 0.91776 1.01825 1.30637 1.16622 1.16268 1.10866 1.05093 0.75632 0.74051 0.74196 1.93557 1.69929 1.85744 1.45724 1.93562 1.70120 1.85588 1.44849 1.60583 1.67819 1.42230 1.16075 1.22833 0.97430 0.87681 0.92058 1.22206 0.96315 0.93659 0.96140 1.22182 0.96836 0.98765 1.00284 1.22586 0.87860 0.94245 0.96781 1.87894 1.14241 1.34051 1.94032 1.22648 0.87528 0.94685 0.96765 1.21966 0.96600 0.97899 1.00104 1.21856 0.95308 0.85807 0.87920 0.88718 1.22453 1.00748 1.03081 0.91455 1.23021 1.02740 0.99186 0.96039 1.22925 1.03318 0.90854 1.03705 0.92945 0.96168 0.96185 0.91728 0.91632 0.85646 0.85788 0.89592 0.89545 0.90360 0.90259 0.92981 0.88836 0.92987 0.88714 0.90356 0.89777 0.86335 0.88731 0.88502 0.88694 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 10 C -0.11 -2.20 5.16 -26.74 -0.14 -2.34 16 11 C -0.61 -9.89 6.18 37.15 0.23 -9.66 16 12 S 2.61 40.13 5.93 -107.50 -0.64 39.49 16 13 O -0.96 -17.41 18.06 -57.54 -1.04 -18.45 16 14 O -0.95 -16.69 16.09 -57.54 -0.93 -17.62 16 15 N -1.03 -11.79 3.73 -113.87 -0.42 -12.22 16 16 C 0.13 1.10 7.94 -3.19 -0.03 1.08 16 17 C -0.08 -0.63 0.65 -154.32 -0.10 -0.73 16 18 C -0.14 -0.85 5.33 -26.71 -0.14 -0.99 16 19 C 0.06 0.39 6.79 37.31 0.25 0.64 16 20 O -0.38 -3.29 10.72 -35.23 -0.38 -3.66 16 21 C 0.06 0.46 6.80 37.31 0.25 0.71 16 22 C -0.13 -1.05 4.29 -26.58 -0.11 -1.16 16 23 C 0.20 1.86 3.97 -67.08 -0.27 1.59 16 24 H 0.10 0.76 8.03 -51.93 -0.42 0.35 16 25 C -0.16 -1.62 3.62 -90.62 -0.33 -1.95 16 26 C -0.17 -1.63 10.22 -26.70 -0.27 -1.90 16 27 C -0.17 -1.34 8.93 -26.69 -0.24 -1.58 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 33 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 34 H 0.12 1.81 8.14 -51.92 -0.42 1.39 16 35 H 0.09 0.58 8.02 -51.93 -0.42 0.17 16 36 H 0.09 0.77 7.75 -51.93 -0.40 0.36 16 37 H 0.08 0.46 7.74 -51.93 -0.40 0.06 16 38 H 0.08 0.38 8.03 -51.93 -0.42 -0.04 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.38 7.81 -51.93 -0.41 -0.03 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.74 8.03 -51.93 -0.42 0.33 16 44 H 0.08 0.66 6.64 -51.93 -0.34 0.32 16 45 H 0.12 1.48 7.17 -51.92 -0.37 1.11 16 46 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.09 0.63 7.74 -51.93 -0.40 0.23 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -35.00 398.80 -11.73 -46.73 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.61 Total: -1.60 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -1.44 Total: -29.37 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.31 Total: -38.22 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -2.34 Total: -39.74 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 40.13 SS G_CDS: -0.64 Total: 39.49 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.00 -11.73 -46.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339080177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.330 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds