Wall clock time and date at job start Wed Apr 1 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30825 * 125.96262 * 2 1 4 4 C 1.33251 * 109.82850 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.52599 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.49919 * 0.06484 * 5 4 3 7 7 C 1.53041 * 109.49802 * 239.99946 * 5 4 3 8 8 C 1.53045 * 109.54061 * 178.68323 * 7 5 4 9 9 C 1.53192 * 109.30939 * 61.36501 * 8 7 5 10 10 N 1.46925 * 108.77656 * 305.36873 * 9 8 7 11 11 S 1.65601 * 120.62761 * 233.58690 * 10 9 8 12 12 O 1.42103 * 106.40424 * 203.53865 * 11 10 9 13 13 O 1.42101 * 106.40397 * 336.45698 * 11 10 9 14 14 N 1.65604 * 107.21901 * 90.00055 * 11 10 9 15 15 C 1.46497 * 120.00147 * 90.00116 * 14 11 10 16 16 C 1.46502 * 119.99840 * 269.99700 * 14 11 10 17 17 C 1.50702 * 109.46945 * 94.99946 * 16 14 11 18 18 H 1.08004 * 120.00059 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99847 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99909 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00082 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47172 * 90.00315 * 21 19 17 23 23 H 1.48501 * 109.46999 * 210.00035 * 21 19 17 24 24 H 1.48493 * 109.47369 * 329.99956 * 21 19 17 25 25 C 1.46920 * 118.74112 * 53.60694 * 10 9 8 26 26 N 1.30709 * 108.94310 * 0.02562 * 4 3 2 27 27 N 1.34434 * 125.95604 * 180.02562 * 2 1 3 28 28 H 0.96991 * 126.82624 * 359.69937 * 27 2 1 29 29 H 1.09002 * 109.47208 * 269.97978 * 1 2 3 30 30 H 1.08997 * 109.47411 * 29.97864 * 1 2 3 31 31 H 1.08996 * 109.47708 * 149.98227 * 1 2 3 32 32 H 1.08994 * 109.46532 * 298.70768 * 7 5 4 33 33 H 1.09005 * 109.45862 * 58.67707 * 7 5 4 34 34 H 1.08996 * 109.49926 * 181.31976 * 8 7 5 35 35 H 1.09007 * 109.49298 * 301.38311 * 8 7 5 36 36 H 1.09003 * 109.58244 * 65.15528 * 9 8 7 37 37 H 1.08996 * 109.58688 * 185.57824 * 9 8 7 38 38 H 1.08999 * 109.47757 * 89.99671 * 15 14 11 39 39 H 1.08996 * 109.47148 * 210.00298 * 15 14 11 40 40 H 1.09003 * 109.46790 * 329.99969 * 15 14 11 41 41 H 1.08990 * 109.47137 * 214.99802 * 16 14 11 42 42 H 1.08994 * 109.47249 * 335.00283 * 16 14 11 43 43 H 0.96995 * 120.00215 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.58555 * 186.60438 * 25 10 9 45 45 H 1.09000 * 109.58513 * 66.17930 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5553 0.6886 -0.0006 5 6 4.7372 1.6234 -0.0013 6 1 4.3852 2.6550 -0.0001 7 6 5.5847 1.3743 -1.2510 8 6 6.7674 2.3455 -1.2694 9 6 7.6421 2.1019 -0.0356 10 7 6.8019 2.1968 1.1660 11 16 7.2146 3.2141 2.4058 12 8 6.5869 2.7001 3.5725 13 8 8.6167 3.4215 2.3049 14 7 6.5021 4.6769 2.0974 15 6 5.1566 4.9577 2.6044 16 6 7.2173 5.6902 1.3176 17 6 6.8082 5.5916 -0.1294 18 1 6.0872 4.8487 -0.4374 19 6 7.3535 6.4503 -1.0600 20 7 6.9961 6.3646 -2.3228 21 14 8.5989 7.7365 -0.5271 22 1 9.9676 7.1674 -0.6170 23 1 8.4966 8.9224 -1.4150 24 1 8.3226 8.1423 0.8744 25 6 5.5890 1.3717 1.2468 26 7 3.6193 -0.6169 -0.0015 27 7 2.2963 -1.0882 -0.0005 28 1 2.0092 -2.0146 0.0032 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 5.9564 0.3497 -1.2396 33 1 4.9741 1.5291 -2.1406 34 1 7.3574 2.1833 -2.1715 35 1 6.3967 3.3705 -1.2566 36 1 8.0865 1.1082 -0.0932 37 1 8.4293 2.8545 0.0086 38 1 5.2279 5.4070 3.5950 39 1 4.6501 5.6467 1.9286 40 1 4.5906 4.0283 2.6670 41 1 6.9715 6.6816 1.6979 42 1 8.2910 5.5238 1.4037 43 1 7.3795 6.9690 -2.9774 44 1 5.0215 1.6426 2.1372 45 1 5.8660 0.3185 1.2939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408135799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:16 Heat of formation + Delta-G solvation = -13.890173 kcal Electronic energy + Delta-G solvation = -29928.221684 eV Core-core repulsion = 25915.299146 eV Total energy + Delta-G solvation = -4012.922538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.18582 -39.55345 -38.41958 -37.24866 -36.93906 -34.84741 -34.39312 -33.33645 -33.04412 -31.76856 -30.16305 -28.73411 -26.76663 -25.60328 -25.24584 -23.78187 -22.61063 -21.72823 -20.74260 -19.86917 -19.11819 -18.79660 -18.61302 -18.33053 -17.38061 -16.73276 -16.32318 -15.88082 -15.78460 -15.50506 -15.30311 -15.04225 -14.74716 -14.65532 -14.43705 -14.34930 -14.04664 -13.82653 -13.65692 -13.53462 -13.45462 -13.13757 -13.07472 -13.01606 -12.97499 -12.74042 -12.43251 -12.36013 -12.31811 -11.99643 -11.93828 -11.80698 -11.62746 -11.22578 -11.07076 -11.00784 -10.66227 -10.46688 -9.99432 -9.67006 -8.16682 -6.18992 -0.36581 0.58749 1.40954 1.45644 1.51045 1.72719 1.79055 1.92376 2.42156 2.51095 2.95856 3.16911 3.34028 3.54002 3.62813 3.83680 3.97684 4.02365 4.16778 4.21355 4.36000 4.39423 4.53176 4.67582 4.72039 4.73270 4.74156 4.80835 4.82582 4.93188 4.99484 5.04720 5.07038 5.12068 5.16461 5.24463 5.29848 5.37174 5.40619 5.51900 5.58150 5.67930 5.89123 6.25529 6.44036 6.89483 7.11851 7.44057 8.96252 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.004154 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.985350 B = 6738.187912 C = 7442.000003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.286 3.714 3 N -0.576 5.576 4 C 0.232 3.768 5 C -0.003 4.003 6 H 0.085 0.915 7 C -0.087 4.087 8 C -0.134 4.134 9 C 0.130 3.870 10 N -0.997 5.997 11 S 2.796 3.204 12 O -1.002 7.002 13 O -1.005 7.005 14 N -0.997 5.997 15 C 0.099 3.901 16 C 0.218 3.782 17 C -0.530 4.530 18 H 0.074 0.926 19 C 0.033 3.967 20 N -0.928 5.928 21 Si 0.911 3.089 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.250 1.250 25 C 0.142 3.858 26 N -0.328 5.328 27 N -0.474 5.474 28 H 0.456 0.544 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.083 0.917 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.093 -14.700 4.143 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.306 5.306 4 C -0.052 4.052 5 C -0.026 4.026 6 H 0.103 0.897 7 C -0.126 4.126 8 C -0.173 4.173 9 C 0.006 3.994 10 N -0.836 5.836 11 S 2.805 3.195 12 O -0.986 6.986 13 O -0.989 6.989 14 N -0.838 5.838 15 C -0.046 4.046 16 C 0.093 3.907 17 C -0.569 4.569 18 H 0.092 0.908 19 C -0.166 4.166 20 N -0.567 5.567 21 Si 0.736 3.264 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.173 1.173 25 C 0.016 3.984 26 N -0.158 5.158 27 N -0.194 5.194 28 H 0.305 0.695 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.951 -14.858 4.759 19.061 hybrid contribution 0.116 0.509 -0.651 0.834 sum -10.835 -14.349 4.108 18.444 Atomic orbital electron populations 1.20643 0.80069 1.06492 1.06087 1.25253 0.98279 0.81984 0.93652 1.70391 1.01775 1.31624 1.26853 1.23964 0.93127 0.90192 0.97875 1.19806 0.88951 0.96536 0.97331 0.89675 1.21331 0.95879 1.00030 0.95356 1.21949 0.96832 1.00952 0.97585 1.21405 0.92171 1.02671 0.83195 1.57964 1.34460 1.56539 1.34619 1.01346 0.72712 0.72398 0.73007 1.93522 1.78188 1.79813 1.47058 1.93516 1.32049 1.85991 1.87347 1.57442 1.27601 1.31281 1.67461 1.21456 0.81755 1.02203 0.99227 1.19414 0.92091 0.88566 0.90650 1.21719 1.25555 1.18445 0.91190 0.90817 1.25414 0.97720 0.98726 0.94773 1.69988 1.44991 1.39433 1.02333 0.86268 0.80606 0.79920 0.79603 1.19991 1.21094 1.17337 1.21312 0.84142 0.96061 0.96912 1.77873 0.98472 1.11884 1.27552 1.47922 1.03264 1.10940 1.57296 0.69494 0.87231 0.88488 0.86679 0.90365 0.92502 0.90370 0.91112 0.89285 0.90757 0.91738 0.90601 0.91441 0.93889 0.94909 0.92722 0.89873 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.51 71.23 0.75 0.16 16 2 C 0.29 5.52 8.24 138.22 1.14 6.66 16 3 N -0.58 -16.61 11.19 -179.73 -2.01 -18.62 16 4 C 0.23 6.95 6.65 138.63 0.92 7.87 16 5 C 0.00 -0.11 2.81 -11.46 -0.03 -0.14 16 6 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 7 C -0.09 -2.68 5.15 30.62 0.16 -2.53 16 8 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 9 C 0.13 4.47 6.38 86.36 0.55 5.02 16 10 N -1.00 -34.91 3.35 -513.08 -1.72 -36.63 16 11 S 2.80 111.27 6.06 -56.49 -0.34 110.93 16 12 O -1.00 -40.50 15.93 -128.00 -2.04 -42.53 16 13 O -1.00 -45.32 15.41 -128.00 -1.97 -47.29 16 14 N -1.00 -40.02 3.23 -543.25 -1.75 -41.77 16 15 C 0.10 3.31 10.31 127.77 1.32 4.63 16 16 C 0.22 9.90 4.48 85.63 0.38 10.28 16 17 C -0.53 -27.02 9.54 25.60 0.24 -26.77 16 18 H 0.07 3.97 5.76 -2.91 -0.02 3.96 16 19 C 0.03 1.78 5.47 84.65 0.46 2.25 16 20 N -0.93 -52.80 13.96 21.45 0.30 -52.50 16 21 Si 0.91 41.75 27.47 68.60 1.88 43.63 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 25 C 0.14 4.43 5.64 86.36 0.49 4.92 16 26 N -0.33 -8.74 12.80 -51.33 -0.66 -9.40 16 27 N -0.47 -8.56 7.45 -50.71 -0.38 -8.94 16 28 H 0.46 4.20 8.96 -213.11 -1.91 2.29 16 29 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.07 3.09 5.31 -2.38 -0.01 3.08 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.07 2.89 7.13 -2.39 -0.02 2.87 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 40 H 0.07 2.07 7.79 -2.39 -0.02 2.05 16 41 H 0.04 1.89 7.16 -2.39 -0.02 1.88 16 42 H 0.03 1.56 6.34 -2.39 -0.02 1.55 16 43 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.08 2.60 7.13 -2.38 -0.02 2.59 16 45 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -72.19 372.22 -3.06 -75.25 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.94 Total: 20.03 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 6.57 Total: 7.84 kcal Atomic # 7 Polarization: -161.65 SS G_CDS: -6.22 Total: -167.86 kcal Atomic # 8 Polarization: -85.81 SS G_CDS: -4.01 Total: -89.82 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.63 kcal Atomic # 16 Polarization: 111.27 SS G_CDS: -0.34 Total: 110.93 kcal Total: -72.19 -3.06 -75.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408135799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.363 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds