Wall clock time and date at job start Wed Apr 1 2020 02:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36898 * 120.00118 * 2 1 4 4 H 1.08004 * 119.99930 * 152.85304 * 3 2 1 5 5 C 1.39031 * 120.00120 * 332.85552 * 3 2 1 6 6 N 1.31378 * 119.99825 * 352.21242 * 5 3 2 7 7 Si 1.86795 * 119.99950 * 172.21380 * 5 3 2 8 8 H 1.48499 * 109.47490 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47224 * 120.00189 * 7 5 3 10 10 H 1.48502 * 109.46998 * 240.00059 * 7 5 3 11 11 C 1.34775 * 119.99959 * 180.02562 * 2 1 3 12 12 O 1.21615 * 119.99858 * 186.46198 * 11 2 1 13 13 C 1.47542 * 119.99827 * 6.45368 * 11 2 1 14 14 N 1.32324 * 126.60970 * 6.15250 * 13 11 2 15 15 N 1.28862 * 110.18203 * 179.97438 * 14 13 11 16 16 C 1.40150 * 125.04327 * 180.20481 * 15 14 13 17 17 C 1.38833 * 120.07740 * 226.86588 * 16 15 14 18 18 C 1.38119 * 119.95727 * 179.97438 * 17 16 15 19 19 C 1.38303 * 120.11428 * 0.02562 * 18 17 16 20 20 C 1.38244 * 120.15869 * 0.02705 * 19 18 17 21 21 C 1.38335 * 120.04676 * 359.69420 * 20 19 18 22 22 F 1.35098 * 120.06277 * 180.30187 * 21 20 19 23 23 C 1.35132 * 109.90195 * 359.93979 * 15 14 13 24 24 C 1.35558 * 107.14487 * 0.10812 * 23 15 14 25 25 C 1.50387 * 124.59315 * 179.79091 * 24 23 15 26 26 C 1.53475 * 108.27682 * 343.75569 * 25 24 23 27 27 C 1.53114 * 109.51475 * 49.51535 * 26 25 24 28 28 C 1.50690 * 128.93030 * 180.20910 * 23 15 14 29 29 H 1.08998 * 109.47394 * 204.09998 * 1 2 3 30 30 H 1.09003 * 109.47096 * 324.10367 * 1 2 3 31 31 H 1.09005 * 109.47222 * 84.09555 * 1 2 3 32 32 H 0.96998 * 120.00042 * 179.97438 * 6 5 3 33 33 H 1.08004 * 120.02089 * 359.95750 * 17 16 15 34 34 H 1.07996 * 119.94094 * 179.97438 * 18 17 16 35 35 H 1.07990 * 119.91914 * 179.97438 * 19 18 17 36 36 H 1.08006 * 119.97509 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.70617 * 103.45085 * 25 24 23 38 38 H 1.09000 * 109.70307 * 224.01907 * 25 24 23 39 39 H 1.09009 * 109.46235 * 169.52606 * 26 25 24 40 40 H 1.08998 * 109.47079 * 289.49842 * 26 25 24 41 41 H 1.08999 * 109.43910 * 50.00241 * 27 26 25 42 42 H 1.08996 * 109.44307 * 169.89433 * 27 26 25 43 43 H 1.09001 * 109.69265 * 283.03038 * 28 23 15 44 44 H 1.08996 * 109.69242 * 43.61674 * 28 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1403 1.2370 0.4268 5 6 1.5692 2.3233 -0.5493 6 7 0.4335 2.2310 -1.2032 7 14 2.4045 3.9831 -0.3577 8 1 3.6617 3.8184 0.4153 9 1 2.7168 4.5379 -1.6992 10 1 1.4986 4.9127 0.3638 11 6 2.1388 -1.1672 -0.0005 12 8 3.3492 -1.1706 0.1180 13 6 1.4081 -2.4408 -0.1447 14 7 0.1167 -2.5858 -0.3941 15 7 -0.1864 -3.8367 -0.4563 16 6 -1.4688 -4.3424 -0.7092 17 6 -1.9832 -5.3614 0.0811 18 6 -3.2475 -5.8575 -0.1700 19 6 -4.0020 -5.3413 -1.2078 20 6 -3.4941 -4.3274 -1.9984 21 6 -2.2308 -3.8216 -1.7492 22 9 -1.7365 -2.8265 -2.5177 23 6 0.9170 -4.5883 -0.2473 24 6 1.9497 -3.7341 -0.0440 25 6 3.3663 -4.1573 0.2316 26 6 3.3556 -5.6362 0.6418 27 6 2.5375 -6.4421 -0.3710 28 6 1.0512 -6.0891 -0.2309 29 1 -0.3634 -0.9381 0.4196 30 1 -0.3633 0.8325 0.6026 31 1 -0.3634 0.1057 -1.0223 32 1 0.0284 3.0249 -1.5861 33 1 -1.3950 -5.7661 0.8915 34 1 -3.6473 -6.6505 0.4446 35 1 -4.9900 -5.7319 -1.4016 36 1 -4.0860 -3.9262 -2.8078 37 1 3.9694 -4.0298 -0.6673 38 1 3.7794 -3.5541 1.0400 39 1 4.3778 -6.0139 0.6658 40 1 2.9086 -5.7356 1.6310 41 1 2.8735 -6.2040 -1.3802 42 1 2.6767 -7.5069 -0.1846 43 1 0.6675 -6.4819 0.7107 44 1 0.4922 -6.5170 -1.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416141523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:15 Heat of formation + Delta-G solvation = 20.267397 kcal Electronic energy + Delta-G solvation = -30552.387450 eV Core-core repulsion = 26385.582182 eV Total energy + Delta-G solvation = -4166.805268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.06274 -44.00009 -40.33712 -39.79036 -37.92040 -36.71022 -34.93441 -33.66527 -31.83275 -31.63951 -30.84432 -29.99386 -28.24786 -26.95067 -25.00167 -24.74833 -24.16153 -23.02289 -22.41934 -20.60098 -20.08254 -19.10023 -18.97840 -18.26012 -17.94544 -17.56277 -16.92387 -16.70312 -16.56689 -16.10816 -15.84490 -15.70848 -15.45329 -15.21439 -14.71063 -14.66341 -14.54767 -14.37200 -14.08840 -13.99522 -13.85530 -13.44912 -13.37684 -13.12680 -13.02635 -12.93880 -12.77942 -12.49941 -12.33315 -12.12450 -11.73617 -11.69348 -11.50831 -11.43401 -11.09299 -10.80091 -10.64819 -10.00038 -9.78624 -9.72040 -9.41607 -8.38298 -6.10696 -0.32203 0.05501 0.70349 1.10227 1.34574 1.38748 1.40048 1.53295 2.22187 2.42110 2.47994 2.94066 3.04848 3.08363 3.43618 3.50685 3.69764 3.86806 3.93128 4.03049 4.14309 4.17979 4.22194 4.29339 4.40253 4.47710 4.60621 4.64366 4.66740 4.78430 4.89170 4.91042 4.97172 4.98301 5.04503 5.14632 5.16462 5.24440 5.28920 5.29282 5.33615 5.37602 5.47079 5.53324 5.68866 5.99304 6.07948 6.38791 6.86635 7.05219 7.31321 7.90770 8.62698 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.004227 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.817326 B = 6622.198140 C = 8779.085824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.442 5.442 3 C -0.349 4.349 4 H 0.080 0.920 5 C -0.005 4.005 6 N -0.897 5.897 7 Si 1.004 2.996 8 H -0.267 1.267 9 H -0.271 1.271 10 H -0.262 1.262 11 C 0.508 3.492 12 O -0.614 6.614 13 C -0.008 4.008 14 N -0.285 5.285 15 N -0.243 5.243 16 C 0.062 3.938 17 C -0.084 4.084 18 C -0.096 4.096 19 C -0.066 4.066 20 C -0.143 4.143 21 C 0.076 3.924 22 F -0.153 7.153 23 C 0.024 3.976 24 C -0.172 4.172 25 C -0.037 4.037 26 C -0.110 4.110 27 C -0.109 4.109 28 C -0.039 4.039 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.275 0.725 33 H 0.158 0.842 34 H 0.187 0.813 35 H 0.184 0.816 36 H 0.159 0.841 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 -24.881 1.955 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.159 5.159 3 C -0.477 4.477 4 H 0.098 0.902 5 C -0.207 4.207 6 N -0.535 5.535 7 Si 0.825 3.175 8 H -0.191 1.191 9 H -0.197 1.197 10 H -0.186 1.186 11 C 0.297 3.703 12 O -0.500 6.500 13 C -0.167 4.167 14 N -0.118 5.118 15 N -0.024 5.024 16 C -0.028 4.028 17 C -0.104 4.104 18 C -0.114 4.114 19 C -0.084 4.084 20 C -0.162 4.162 21 C 0.055 3.945 22 F -0.132 7.132 23 C -0.099 4.099 24 C -0.182 4.182 25 C -0.075 4.075 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.077 4.077 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.176 0.824 34 H 0.204 0.796 35 H 0.202 0.798 36 H 0.177 0.823 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.495 -24.085 1.679 27.185 hybrid contribution 1.323 1.947 -0.432 2.394 sum -11.171 -22.138 1.248 24.828 Atomic orbital electron populations 1.21503 0.79357 0.99026 1.00828 1.43670 1.06818 1.04613 1.60766 1.19807 1.02205 0.86365 1.39319 0.90174 1.26431 0.96905 1.03677 0.93688 1.70123 1.18884 1.31336 1.33110 0.84744 0.78350 0.75884 0.78484 1.19126 1.19659 1.18649 1.17378 0.86307 0.82645 0.83988 1.90519 1.14405 1.87059 1.58017 1.21948 0.90633 0.95636 1.08497 1.74301 1.16108 0.99765 1.21619 1.42701 1.06962 1.03001 1.49749 1.18170 0.83548 1.01523 0.99534 1.21361 0.97488 0.94083 0.97426 1.21642 0.91484 1.00387 0.97870 1.21719 1.01509 0.92722 0.92429 1.21494 0.92062 0.99336 1.03299 1.18322 0.95476 0.89490 0.91236 1.91534 1.88239 1.59583 1.73838 1.21983 0.84555 0.97771 1.05624 1.20248 0.98637 0.89823 1.09525 1.19932 0.89159 0.97814 1.00615 1.21649 1.01911 0.91509 0.99647 1.21605 0.92106 1.01667 0.99326 1.20531 0.99509 0.82929 1.04779 0.91383 0.94005 0.94025 0.91499 0.82420 0.79567 0.79833 0.82327 0.92481 0.92807 0.89323 0.90888 0.92633 0.86816 0.86847 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.77 7.98 127.77 1.02 8.79 16 2 N -0.44 -27.47 3.00 -662.51 -1.99 -29.46 16 3 C -0.35 -22.21 9.23 84.09 0.78 -21.43 16 4 H 0.08 5.27 7.43 -2.91 -0.02 5.25 16 5 C 0.00 -0.29 5.21 84.95 0.44 0.15 16 6 N -0.90 -53.25 10.68 21.68 0.23 -53.01 16 7 Si 1.00 45.75 29.56 68.60 2.03 47.78 16 8 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 11 C 0.51 30.86 7.61 86.70 0.66 31.52 16 12 O -0.61 -39.54 15.61 -4.08 -0.06 -39.61 16 13 C -0.01 -0.43 6.73 42.10 0.28 -0.15 16 14 N -0.29 -13.50 7.90 -48.64 -0.38 -13.88 16 15 N -0.24 -8.97 3.33 -175.77 -0.59 -9.55 16 16 C 0.06 1.76 6.06 38.15 0.23 1.99 16 17 C -0.08 -1.39 8.98 22.38 0.20 -1.19 16 18 C -0.10 -0.83 10.04 22.26 0.22 -0.60 16 19 C -0.07 -0.61 10.04 22.29 0.22 -0.39 16 20 C -0.14 -2.56 10.02 22.29 0.22 -2.34 16 21 C 0.08 2.21 7.26 22.49 0.16 2.37 16 22 F -0.15 -6.07 16.53 44.97 0.74 -5.33 16 23 C 0.02 0.78 6.51 41.43 0.27 1.05 16 24 C -0.17 -7.14 5.99 -20.01 -0.12 -7.26 16 25 C -0.04 -1.32 5.50 29.91 0.16 -1.16 16 26 C -0.11 -2.43 5.91 30.79 0.18 -2.25 16 27 C -0.11 -1.89 5.89 30.77 0.18 -1.71 16 28 C -0.04 -0.73 5.01 29.98 0.15 -0.58 16 29 H 0.07 3.63 5.15 -2.39 -0.01 3.62 16 30 H 0.04 2.37 7.53 -2.39 -0.02 2.35 16 31 H 0.04 2.52 7.22 -2.38 -0.02 2.50 16 32 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.16 1.99 7.03 -2.91 -0.02 1.97 16 34 H 0.19 0.00 8.06 -2.91 -0.02 -0.03 16 35 H 0.18 0.16 8.06 -2.92 -0.02 0.14 16 36 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 2.19 7.79 -2.39 -0.02 2.17 16 39 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 41 H 0.05 1.12 8.12 -2.39 -0.02 1.11 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 1.41 7.54 -2.39 -0.02 1.39 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -90.82 362.86 6.29 -84.53 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.04 Total: 11.71 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.27 Total: 6.82 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -2.73 Total: -105.91 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.06 Total: -39.61 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.74 Total: -5.33 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -90.82 6.29 -84.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416141523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.799 kcal (2) G-P(sol) polarization free energy of solvation -90.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds