Wall clock time and date at job start Wed Apr 1 2020 02:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47160 * 2 1 4 4 C 1.46493 * 119.99751 * 84.99881 * 3 2 1 5 5 C 1.50706 * 109.47128 * 85.00265 * 4 3 2 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 S 1.65596 * 119.99966 * 265.00396 * 3 2 1 14 14 O 1.42097 * 106.40729 * 23.53774 * 13 3 2 15 15 O 1.42103 * 106.40236 * 156.46090 * 13 3 2 16 16 N 1.65598 * 107.21978 * 269.99786 * 13 3 2 17 17 C 1.46927 * 120.63004 * 89.99831 * 16 13 3 18 18 C 1.53191 * 108.77185 * 126.37306 * 17 16 13 19 19 C 1.53042 * 109.31373 * 54.63494 * 18 17 16 20 20 C 1.53036 * 109.53887 * 298.63249 * 19 18 17 21 21 H 1.08997 * 109.50106 * 301.37844 * 20 19 18 22 22 N 1.46508 * 109.49603 * 181.31677 * 20 19 18 23 23 C 1.35309 * 125.86659 * 324.99818 * 22 20 19 24 24 C 1.35351 * 106.17430 * 180.02562 * 23 22 20 25 25 N 1.33774 * 106.49595 * 359.97438 * 24 23 22 26 26 N 1.28640 * 108.88615 * 359.73868 * 25 24 23 27 27 C 1.46931 * 120.62962 * 269.72660 * 16 13 3 28 28 H 1.08997 * 109.47208 * 299.99710 * 1 2 3 29 29 H 1.08996 * 109.47539 * 59.99873 * 1 2 3 30 30 H 1.09000 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47135 * 240.00212 * 2 1 3 32 32 H 1.08996 * 109.47539 * 120.00127 * 2 1 3 33 33 H 1.09001 * 109.47786 * 325.00538 * 4 3 2 34 34 H 1.09006 * 109.47401 * 205.00123 * 4 3 2 35 35 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 36 36 H 1.09001 * 109.58676 * 246.15583 * 17 16 13 37 37 H 1.08994 * 109.58873 * 6.58609 * 17 16 13 38 38 H 1.09003 * 109.49806 * 174.58805 * 18 17 16 39 39 H 1.08993 * 109.50147 * 294.64942 * 18 17 16 40 40 H 1.09007 * 109.46082 * 58.65802 * 19 18 17 41 41 H 1.09005 * 109.46042 * 178.62321 * 19 18 17 42 42 H 1.08000 * 126.91251 * 0.02716 * 23 22 20 43 43 H 1.08002 * 126.75768 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.58702 * 353.41449 * 27 16 13 45 45 H 1.09003 * 109.58754 * 113.84266 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.4948 1.7888 1.8823 6 1 4.1721 1.1110 1.3839 7 6 3.8529 2.3613 3.0843 8 7 3.0280 3.1861 3.6915 9 14 5.5094 1.9642 3.8512 10 1 5.6518 2.7026 5.1317 11 1 5.5986 0.5044 4.1084 12 1 6.5948 2.3705 2.9227 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3057 3.5186 -1.1998 16 7 4.0143 1.8138 -1.7138 17 6 4.4256 0.6246 -2.4724 18 6 5.3287 1.0654 -3.6286 19 6 6.4922 1.8915 -3.0755 20 6 5.9477 3.1433 -2.3837 21 1 5.3671 3.7294 -3.0962 22 7 7.0636 3.9493 -1.8821 23 6 8.2277 3.4699 -1.3862 24 6 8.9651 4.5517 -1.0427 25 7 8.2259 5.6258 -1.3419 26 7 7.1073 5.2351 -1.8428 27 6 5.0513 2.7291 -1.2181 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3618 1.8096 1.9453 34 1 2.0921 3.1803 1.0756 35 1 2.1677 3.3920 3.2935 36 1 4.9737 -0.0542 -1.8190 37 1 3.5439 0.1211 -2.8689 38 1 5.7183 0.1861 -4.1416 39 1 4.7534 1.6701 -4.3295 40 1 7.0524 1.2938 -2.3565 41 1 7.1497 2.1859 -3.8936 42 1 8.5114 2.4328 -1.2849 43 1 9.9554 4.5485 -0.6119 44 1 4.5823 3.6137 -0.7873 45 1 5.6515 2.2253 -0.4603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425198932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:51 Heat of formation + Delta-G solvation = -2.336115 kcal Electronic energy + Delta-G solvation = -30191.491380 eV Core-core repulsion = 26179.069863 eV Total energy + Delta-G solvation = -4012.421517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.24775 -39.82868 -38.56530 -37.89301 -37.06170 -35.56639 -34.95987 -33.21435 -31.96081 -31.50583 -31.13320 -28.12417 -25.85967 -25.38159 -25.04985 -23.73671 -23.43818 -22.72307 -21.36330 -20.08080 -19.13922 -19.04890 -18.45084 -18.20635 -17.65094 -17.13675 -16.38677 -15.99353 -15.77845 -15.62806 -15.61488 -15.25758 -15.01499 -15.01115 -14.69818 -14.52885 -14.14283 -14.04327 -13.79975 -13.43705 -13.36042 -13.20202 -13.15646 -12.88820 -12.84144 -12.69720 -12.64842 -12.33024 -12.27711 -12.08857 -11.99642 -11.88918 -11.77940 -11.69896 -11.32942 -11.18815 -10.57682 -10.35105 -10.14393 -9.79076 -8.64033 -6.40521 -0.53044 0.66109 1.29953 1.51259 1.59184 1.65085 1.76265 1.83023 2.38330 2.56425 3.14065 3.19634 3.22809 3.40687 3.67418 3.70861 3.81307 3.88531 4.03831 4.05422 4.21116 4.30953 4.32538 4.35335 4.41412 4.52088 4.58758 4.62319 4.73256 4.83021 4.86719 4.89728 4.90642 4.93954 4.97655 5.03407 5.24754 5.27991 5.30025 5.34127 5.45975 5.66297 5.77872 5.84455 6.22739 6.49344 7.41065 7.53007 8.72220 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.008993 B = 0.005993 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.669776 B = 4670.745198 C = 6713.978335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.991 5.991 4 C 0.249 3.751 5 C -0.608 4.608 6 H 0.071 0.929 7 C -0.032 4.032 8 N -0.938 5.938 9 Si 1.107 2.893 10 H -0.295 1.295 11 H -0.259 1.259 12 H -0.267 1.267 13 S 2.793 3.207 14 O -0.989 6.989 15 O -1.021 7.021 16 N -0.993 5.993 17 C 0.100 3.900 18 C -0.120 4.120 19 C -0.115 4.115 20 C 0.132 3.868 21 H 0.103 0.897 22 N -0.283 5.283 23 C -0.031 4.031 24 C -0.064 4.064 25 N -0.312 5.312 26 N -0.136 5.136 27 C 0.127 3.873 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.014 0.986 34 H 0.003 0.997 35 H 0.255 0.745 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.235 0.765 43 H 0.222 0.778 44 H 0.058 0.942 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.774 -12.995 -14.306 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.004 4.004 3 N -0.831 5.831 4 C 0.124 3.876 5 C -0.647 4.647 6 H 0.089 0.911 7 C -0.230 4.230 8 N -0.575 5.575 9 Si 0.929 3.071 10 H -0.221 1.221 11 H -0.184 1.184 12 H -0.192 1.192 13 S 2.803 3.197 14 O -0.973 6.973 15 O -1.006 7.006 16 N -0.834 5.834 17 C -0.024 4.024 18 C -0.159 4.159 19 C -0.153 4.153 20 C 0.028 3.972 21 H 0.121 0.879 22 N -0.077 5.077 23 C -0.182 4.182 24 C -0.222 4.222 25 N -0.177 5.177 26 N -0.115 5.115 27 C -0.001 4.001 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.252 0.748 43 H 0.239 0.761 44 H 0.077 0.923 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.311 -10.868 -13.877 19.935 hybrid contribution -1.013 -0.575 -0.259 1.193 sum 8.299 -11.443 -14.137 19.991 Atomic orbital electron populations 1.22213 0.95997 1.03504 1.01141 1.21308 0.94561 0.80903 1.03647 1.57564 1.79186 1.24235 1.22165 1.18807 0.97091 0.90292 0.81394 1.22568 1.02886 1.30572 1.08706 0.91093 1.27220 1.06960 0.93205 0.95640 1.70919 1.10036 1.34877 1.41706 0.83087 0.71200 0.77239 0.75619 1.22083 1.18397 1.19198 1.01381 0.73404 0.72296 0.72639 1.93530 1.70711 1.76079 1.57000 1.93531 1.86572 1.33970 1.86479 1.57911 1.22959 1.34356 1.68154 1.21963 1.01246 0.85496 0.93663 1.21895 0.95340 1.01770 0.96923 1.21956 0.99389 0.92518 1.01482 1.22132 0.85026 0.93599 0.96443 0.87873 1.47689 1.14321 1.05539 1.40147 1.24390 0.86339 1.04181 1.03298 1.24308 1.03798 0.87692 1.06362 1.75042 0.99692 1.28777 1.14198 1.78348 1.17554 0.94364 1.21211 1.21315 0.90397 0.93316 0.95083 0.93848 0.93407 0.88607 0.88787 0.90135 0.96793 0.97900 0.93582 0.88536 0.88306 0.85438 0.91542 0.87664 0.88440 0.74840 0.76143 0.92302 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 10.24 71.98 0.74 -4.16 16 2 C 0.12 3.76 6.06 86.38 0.52 4.28 16 3 N -0.99 -39.10 2.82 -519.83 -1.47 -40.57 16 4 C 0.25 12.30 4.75 85.64 0.41 12.71 16 5 C -0.61 -30.82 9.38 25.60 0.24 -30.57 16 6 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 7 C -0.03 -1.71 5.46 84.65 0.46 -1.25 16 8 N -0.94 -56.46 13.65 21.45 0.29 -56.17 16 9 Si 1.11 46.80 29.90 68.60 2.05 48.85 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 12 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 13 S 2.79 106.22 6.10 -56.49 -0.34 105.88 16 14 O -0.99 -36.18 15.70 -128.00 -2.01 -38.19 16 15 O -1.02 -48.98 15.27 -128.00 -1.95 -50.93 16 16 N -0.99 -28.63 3.35 -513.83 -1.72 -30.35 16 17 C 0.10 1.79 6.48 86.36 0.56 2.35 16 18 C -0.12 -1.42 6.08 30.67 0.19 -1.24 16 19 C -0.12 -1.45 4.78 30.62 0.15 -1.31 16 20 C 0.13 3.12 3.26 44.92 0.15 3.27 16 21 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 22 N -0.28 -7.66 3.26 -327.47 -1.07 -8.72 16 23 C -0.03 -0.62 10.69 83.49 0.89 0.28 16 24 C -0.06 -1.50 12.05 83.73 1.01 -0.49 16 25 N -0.31 -10.55 12.41 -58.25 -0.72 -11.27 16 26 N -0.14 -4.83 13.17 37.02 0.49 -4.34 16 27 C 0.13 3.91 6.06 86.22 0.52 4.43 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.34 7.61 -2.38 -0.02 2.32 16 32 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16 33 H 0.01 0.73 7.98 -2.39 -0.02 0.71 16 34 H 0.00 0.17 6.78 -2.38 -0.02 0.16 16 35 H 0.25 15.67 7.22 -92.71 -0.67 15.00 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.75 6.92 -2.39 -0.02 1.74 16 38 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.87 7.24 -2.38 -0.02 0.86 16 41 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.24 2.19 7.34 -2.91 -0.02 2.17 16 43 H 0.22 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.06 2.40 6.91 -2.39 -0.02 2.39 16 45 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -80.85 377.49 0.46 -80.39 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.09 Total: 17.15 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.83 Total: -11.71 kcal Atomic # 7 Polarization: -147.23 SS G_CDS: -4.20 Total: -151.43 kcal Atomic # 8 Polarization: -85.16 SS G_CDS: -3.96 Total: -89.12 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.05 Total: 48.85 kcal Atomic # 16 Polarization: 106.22 SS G_CDS: -0.34 Total: 105.88 kcal Total: -80.85 0.46 -80.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425198932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.055 kcal (2) G-P(sol) polarization free energy of solvation -80.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds