Wall clock time and date at job start Wed Apr 1 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 C 1.50700 * 109.46769 * 179.72341 * 9 8 6 11 11 N 1.31070 * 126.66096 * 90.02652 * 10 9 8 12 12 N 1.28848 * 107.98874 * 179.97438 * 11 10 9 13 13 N 1.28733 * 109.39823 * 359.97438 * 12 11 10 14 14 N 1.29018 * 108.81051 * 359.74296 * 13 12 11 15 15 C 1.46502 * 126.44422 * 180.24632 * 14 13 12 16 16 C 1.52996 * 109.47246 * 270.18356 * 15 14 13 17 17 C 1.53000 * 109.47075 * 179.97438 * 16 15 14 18 18 S 1.81004 * 109.47038 * 180.02562 * 17 16 15 19 19 C 1.76204 * 99.99924 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00244 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00048 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00139 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99695 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47350 * 90.00019 * 23 21 19 25 25 H 1.48507 * 109.47133 * 209.99973 * 23 21 19 26 26 H 1.48500 * 109.47367 * 329.99990 * 23 21 19 27 27 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 28 28 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 29 29 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 32 32 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 33 33 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 34 34 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 35 35 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 38 38 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 39 39 H 1.09010 * 109.46572 * 30.17982 * 15 14 13 40 40 H 1.09001 * 109.47449 * 150.17730 * 15 14 13 41 41 H 1.08995 * 109.47460 * 299.99571 * 16 15 14 42 42 H 1.09005 * 109.46957 * 59.99560 * 16 15 14 43 43 H 1.09002 * 109.47271 * 299.99666 * 17 16 15 44 44 H 1.08995 * 109.47308 * 60.00343 * 17 16 15 45 45 H 0.97002 * 120.00344 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 6 2.2739 -4.6097 3.8545 11 7 1.7241 -4.5920 5.0442 12 7 2.5428 -5.1480 5.8692 13 7 3.6003 -5.5203 5.2366 14 7 3.4703 -5.2112 3.9907 15 6 4.4436 -5.4635 2.9253 16 6 5.3960 -4.2715 2.8117 17 6 6.4129 -4.5353 1.6994 18 16 7.5400 -3.1253 1.5656 19 6 8.5713 -3.6819 0.2497 20 1 8.3927 -4.6445 -0.2062 21 6 9.6138 -2.8836 -0.2002 22 7 10.3845 -3.2996 -1.1828 23 14 9.9231 -1.2190 0.5889 24 1 10.8648 -1.3775 1.7262 25 1 10.5109 -0.2966 -0.4156 26 1 8.6395 -0.6594 1.0834 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2073 -2.1393 35 1 3.1300 -0.7207 -1.2495 36 1 2.6269 -2.2366 3.0832 37 1 0.5922 -4.1415 2.6268 38 1 2.0457 -4.6481 1.7330 39 1 5.0135 -6.3628 3.1593 40 1 3.9196 -5.6013 1.9795 41 1 4.8262 -3.3722 2.5777 42 1 5.9200 -4.1337 3.7575 43 1 6.9827 -5.4345 1.9338 44 1 5.8891 -4.6732 0.7535 45 1 11.1129 -2.7416 -1.4974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493874939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:03 Heat of formation + Delta-G solvation = 22.871269 kcal Electronic energy + Delta-G solvation = -27991.191151 eV Core-core repulsion = 23979.862708 eV Total energy + Delta-G solvation = -4011.328442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.51425 -40.98870 -37.90817 -36.86791 -35.50971 -34.25079 -33.40667 -32.57252 -32.47390 -28.27600 -27.60047 -27.52411 -27.28228 -25.80562 -23.86007 -23.13971 -22.46413 -21.52883 -20.44282 -18.68054 -17.91262 -17.52052 -17.35493 -16.75076 -16.53288 -15.84269 -15.68516 -15.16186 -15.11764 -14.81704 -14.52579 -14.33552 -14.09176 -13.64453 -13.42154 -13.29155 -12.98942 -12.69626 -12.62098 -12.45860 -12.32522 -12.12462 -12.07429 -12.06769 -11.64174 -11.55648 -11.47443 -11.42657 -11.25053 -11.20959 -11.01346 -10.68650 -10.55769 -10.38495 -10.22273 -9.94251 -9.69099 -9.13716 -8.77178 -7.12775 -6.41005 -4.15999 0.73475 1.58999 1.73145 2.15064 2.56633 2.80794 3.20242 3.33813 3.35316 3.42395 3.82321 3.85867 4.18766 4.26417 4.49127 4.51567 4.57945 4.66684 4.71501 4.75102 4.86282 4.96799 4.99072 5.03479 5.18546 5.23523 5.28254 5.37531 5.40995 5.45900 5.50235 5.60983 5.66829 5.70442 5.72404 5.82290 5.85108 5.97722 6.08565 6.19928 6.21264 6.28322 6.99112 7.82208 8.05902 8.29787 8.30733 9.04174 10.68257 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.006917 B = 0.004033 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4046.914466 B = 6940.754712 C =10169.671515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.138 3.862 3 C -0.143 4.143 4 C -0.186 4.186 5 O -0.358 6.358 6 C 0.661 3.339 7 O -0.564 6.564 8 N -0.711 5.711 9 C 0.228 3.772 10 C 0.155 3.845 11 N -0.282 5.282 12 N -0.078 5.078 13 N -0.078 5.078 14 N -0.285 5.285 15 C 0.108 3.892 16 C -0.117 4.117 17 C -0.085 4.085 18 S -0.201 6.201 19 C -0.507 4.507 20 H 0.090 0.910 21 C 0.095 3.905 22 N -0.878 5.878 23 Si 0.859 3.141 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.238 1.238 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.277 3.075 3.507 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.101 3.899 3 C -0.200 4.200 4 C -0.243 4.243 5 O -0.272 6.272 6 C 0.415 3.585 7 O -0.452 6.452 8 N -0.373 5.373 9 C 0.102 3.898 10 C -0.123 4.123 11 N -0.133 5.133 12 N -0.072 5.072 13 N -0.064 5.064 14 N -0.088 5.088 15 C -0.014 4.014 16 C -0.157 4.157 17 C -0.234 4.234 18 S 0.026 5.974 19 C -0.655 4.655 20 H 0.108 0.892 21 C -0.114 4.114 22 N -0.514 5.514 23 Si 0.684 3.316 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.162 1.162 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.469 3.599 4.888 20.393 hybrid contribution 0.899 -0.172 -1.235 1.537 sum -18.570 3.426 3.654 19.234 Atomic orbital electron populations 1.22526 0.94007 1.04989 1.02526 1.22137 0.94198 0.91628 0.81929 1.21883 1.02816 0.92285 1.03027 1.22540 1.02345 1.03247 0.96192 1.86335 1.71276 1.22928 1.46690 1.17819 0.78445 0.80822 0.81414 1.90925 1.40880 1.70506 1.42927 1.44471 1.56640 1.11369 1.24787 1.19440 1.01140 0.80175 0.88996 1.25765 0.86488 1.01641 0.98423 1.75044 1.24264 1.16585 0.97404 1.78694 0.95554 1.10874 1.22031 1.78976 1.19945 1.18424 0.89015 1.48797 1.14601 1.36838 1.08555 1.22645 0.89599 1.02505 0.86644 1.21760 0.96458 0.96170 1.01284 1.22937 0.98696 1.02527 0.99260 1.84278 1.37263 1.25554 1.50268 1.22078 1.16364 1.08269 1.18766 0.89226 1.24761 0.94374 0.98209 0.94049 1.69920 1.17766 1.37944 1.25754 0.86715 0.81084 0.83877 0.79938 1.19259 1.19906 1.16227 0.92197 0.91054 0.89399 0.91021 0.90042 0.91529 0.89410 0.91081 0.91480 0.75372 0.86700 0.88077 0.86194 0.86725 0.90418 0.89734 0.90556 0.90697 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 2 C 0.14 1.39 1.13 -90.62 -0.10 1.28 16 3 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 4 C -0.19 -1.95 8.37 37.16 0.31 -1.64 16 5 O -0.36 -4.19 9.94 -40.32 -0.40 -4.59 16 6 C 0.66 7.60 8.06 54.06 0.44 8.03 16 7 O -0.56 -7.22 11.88 -19.28 -0.23 -7.45 16 8 N -0.71 -6.70 5.55 -66.47 -0.37 -7.07 16 9 C 0.23 1.86 6.01 -5.19 -0.03 1.83 16 10 C 0.16 1.57 7.50 -155.43 -1.17 0.41 16 11 N -0.28 -3.61 12.36 32.70 0.40 -3.20 16 12 N -0.08 -1.11 13.43 60.35 0.81 -0.30 16 13 N -0.08 -1.02 13.29 60.35 0.80 -0.22 16 14 N -0.29 -2.98 3.35 -58.26 -0.19 -3.18 16 15 C 0.11 0.94 6.22 -4.04 -0.03 0.91 16 16 C -0.12 -1.38 5.54 -26.73 -0.15 -1.53 16 17 C -0.09 -1.34 5.67 37.16 0.21 -1.13 16 18 S -0.20 -4.44 19.41 -107.50 -2.09 -6.52 16 19 C -0.51 -13.75 10.04 30.94 0.31 -13.44 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 21 C 0.10 2.64 5.50 -17.43 -0.10 2.55 16 22 N -0.88 -25.52 13.97 55.49 0.78 -24.74 16 23 Si 0.86 20.52 27.74 -169.99 -4.71 15.81 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.24 -5.55 6.74 56.52 0.38 -5.17 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.41 3.74 8.57 -40.82 -0.35 3.39 16 37 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.68 7.16 -51.93 -0.37 0.31 16 39 H 0.12 0.92 8.14 -51.92 -0.42 0.49 16 40 H 0.11 0.72 7.14 -51.93 -0.37 0.35 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.18 8.14 -51.91 -0.42 0.76 16 44 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -32.53 389.96 -5.76 -38.30 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.78 Total: 2.21 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.34 Total: -4.92 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 2.23 Total: -38.72 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.63 Total: -12.04 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.71 Total: 15.81 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.09 Total: -6.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.53 -5.76 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493874939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.168 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds