Wall clock time and date at job start Wed Apr 1 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 C 1.53008 * 109.46966 * 239.99811 * 2 1 3 5 5 O 1.45200 * 109.47468 * 120.00137 * 2 1 3 6 6 C 1.34638 * 116.99775 * 59.99550 * 5 2 1 7 7 O 1.21505 * 120.00307 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99652 * 180.02562 * 6 5 2 9 9 C 1.47583 * 134.48847 * 179.97438 * 8 6 5 10 10 C 1.53947 * 86.11463 * 155.36171 * 9 8 6 11 11 O 1.42899 * 113.74623 * 269.26059 * 10 9 8 12 12 C 1.50700 * 113.74156 * 137.95167 * 10 9 8 13 13 O 1.21276 * 119.99960 * 335.00151 * 12 10 9 14 14 N 1.34781 * 120.00018 * 155.00171 * 12 10 9 15 15 C 1.46498 * 120.00002 * 180.02562 * 14 12 10 16 16 C 1.50694 * 109.47030 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00120 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99890 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00269 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99792 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00245 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00160 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99985 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47276 * 90.00878 * 23 21 19 25 25 H 1.48502 * 109.47103 * 210.00249 * 23 21 19 26 26 H 1.48496 * 109.47480 * 330.00550 * 23 21 19 27 27 C 1.47573 * 134.49478 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.46775 * 299.99504 * 1 2 3 29 29 H 1.08995 * 109.47317 * 60.00122 * 1 2 3 30 30 H 1.09002 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47165 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47145 * 300.00441 * 3 2 1 33 33 H 1.08996 * 109.47200 * 59.99701 * 3 2 1 34 34 H 1.08993 * 109.47417 * 300.00099 * 4 2 1 35 35 H 1.09001 * 109.46675 * 60.00156 * 4 2 1 36 36 H 1.09003 * 109.47041 * 179.97438 * 4 2 1 37 37 H 1.08996 * 113.77114 * 41.06515 * 9 8 6 38 38 H 1.08993 * 113.87279 * 269.67669 * 9 8 6 39 39 H 0.96696 * 114.00337 * 180.02562 * 11 10 9 40 40 H 0.96995 * 120.00101 * 359.97438 * 14 12 10 41 41 H 1.08998 * 109.47071 * 300.00464 * 15 14 12 42 42 H 1.09005 * 109.46815 * 59.99760 * 15 14 12 43 43 H 0.97007 * 120.00029 * 0.02562 * 18 16 15 44 44 H 0.97000 * 120.00605 * 180.02562 * 22 21 19 45 45 H 1.09003 * 113.77162 * 90.33892 * 27 8 6 46 46 H 1.09004 * 113.77283 * 318.93865 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4171 9 6 1.8716 -4.0474 2.8966 10 6 3.1927 -3.8570 3.6636 11 8 4.3495 -4.2537 2.9243 12 6 3.1678 -4.4154 5.0631 13 8 2.1131 -4.5334 5.6501 14 7 4.3175 -4.7837 5.6623 15 6 4.2931 -5.3271 7.0226 16 6 5.6978 -5.6580 7.4565 17 8 6.6278 -5.4592 6.7037 18 7 5.9207 -6.1751 8.6810 19 6 7.1986 -6.4757 9.0760 20 1 8.0268 -6.2986 8.4058 21 6 7.4283 -7.0092 10.3383 22 7 8.6532 -7.2978 10.7167 23 14 5.9959 -7.3162 11.4973 24 1 5.4726 -8.6896 11.2847 25 1 6.4565 -7.1740 12.9019 26 1 4.9200 -6.3291 11.2269 27 6 2.8992 -2.3470 3.5937 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.9256 -4.7979 2.1080 38 1 1.0025 -4.1712 3.5426 39 1 5.1815 -4.1361 3.4028 40 1 5.1609 -4.6898 5.1926 41 1 3.8673 -4.5882 7.7014 42 1 3.6847 -6.2313 7.0418 43 1 5.1768 -6.3345 9.2829 44 1 8.8136 -7.6706 11.5977 45 1 2.3313 -1.9701 4.4443 46 1 3.7740 -1.7395 3.3619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496975471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:30 Heat of formation + Delta-G solvation = -148.431003 kcal Electronic energy + Delta-G solvation = -30047.481299 eV Core-core repulsion = 25553.679011 eV Total energy + Delta-G solvation = -4493.802288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51282 -40.53581 -39.04573 -38.15492 -36.95885 -35.88080 -34.63564 -34.27204 -33.85455 -31.90245 -29.84423 -28.20541 -27.74421 -27.68744 -26.84173 -24.92710 -23.58163 -21.70702 -20.29249 -19.94895 -19.65680 -19.19147 -18.33175 -18.03730 -17.09076 -16.57182 -16.42534 -16.06204 -15.66990 -15.40650 -15.21013 -15.14393 -14.69758 -14.51228 -14.37013 -14.14571 -13.88725 -13.54130 -13.45165 -13.23003 -12.91388 -12.80800 -12.63111 -12.49680 -12.32596 -12.28473 -12.22341 -12.21173 -12.01872 -11.76020 -11.58907 -11.31403 -10.88444 -10.71961 -10.66223 -10.38955 -10.14759 -9.93601 -9.79362 -9.21708 -9.12293 -8.90583 -8.40083 -6.49045 -4.02320 1.60484 2.16601 2.55052 2.88189 2.92326 2.97598 3.06954 3.23839 3.43491 3.53218 3.82665 3.95817 4.35821 4.38242 4.42949 4.43917 4.54630 4.57198 4.80652 5.01630 5.05139 5.07127 5.13576 5.20985 5.24048 5.35595 5.36846 5.42734 5.49856 5.51497 5.53372 5.61219 5.63748 5.66685 5.96832 6.00789 6.19880 6.20139 6.90517 7.27288 7.33276 7.42126 7.86526 7.96275 8.05249 8.34460 8.72423 9.20021 9.51596 10.62756 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.001839 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.722078 B =15223.578007 C =15479.677169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.681 3.319 7 O -0.565 6.565 8 N -0.626 5.626 9 C 0.164 3.836 10 C 0.076 3.924 11 O -0.520 6.520 12 C 0.504 3.496 13 O -0.531 6.531 14 N -0.698 5.698 15 C 0.105 3.895 16 C 0.434 3.566 17 O -0.580 6.580 18 N -0.572 5.572 19 C -0.312 4.312 20 H 0.122 0.878 21 C 0.046 3.954 22 N -0.871 5.871 23 Si 0.880 3.120 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.267 1.267 27 C 0.099 3.901 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.389 0.611 40 H 0.410 0.590 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.375 0.625 44 H 0.277 0.723 45 H 0.105 0.895 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.922 13.807 -16.715 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.438 3.562 7 O -0.455 6.455 8 N -0.368 5.368 9 C 0.042 3.958 10 C 0.030 3.970 11 O -0.326 6.326 12 C 0.288 3.712 13 O -0.408 6.408 14 N -0.353 5.353 15 C -0.023 4.023 16 C 0.220 3.780 17 O -0.465 6.465 18 N -0.210 5.210 19 C -0.441 4.441 20 H 0.140 0.860 21 C -0.158 4.158 22 N -0.509 5.509 23 Si 0.705 3.295 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.192 1.192 27 C -0.025 4.025 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.240 0.760 40 H 0.249 0.751 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.208 0.792 44 H 0.087 0.913 45 H 0.123 0.877 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.592 13.639 -17.555 27.153 hybrid contribution -0.104 -0.106 1.337 1.345 sum -15.696 13.533 -16.219 26.316 Atomic orbital electron populations 1.22518 0.93977 1.05060 1.02510 1.22111 0.94394 0.91558 0.82116 1.21857 1.02358 0.92394 1.03129 1.22522 1.01704 1.03481 0.96373 1.86314 1.71622 1.23188 1.46397 1.17296 0.77850 0.80205 0.80888 1.90905 1.41267 1.70460 1.42820 1.48250 1.54190 1.14070 1.20337 1.23176 0.94221 0.82117 0.96248 1.22941 0.89923 0.95290 0.88825 1.86621 1.15598 1.87008 1.43421 1.20564 0.84314 0.78736 0.87635 1.90742 1.30164 1.54487 1.65381 1.45664 1.09979 1.63133 1.16506 1.21063 0.97334 1.00341 0.83536 1.19553 0.89461 0.85183 0.83771 1.90541 1.44187 1.58441 1.53305 1.42121 1.09221 1.56106 1.13510 1.19441 0.83838 1.39840 1.00948 0.85997 1.25080 0.96831 0.96839 0.97093 1.69612 1.19165 1.41370 1.20779 0.86668 0.81950 0.79344 0.81498 1.19333 1.19912 1.19243 1.23841 0.95473 0.95147 0.88047 0.92146 0.91069 0.89423 0.91382 0.90079 0.91450 0.89385 0.91114 0.92054 0.87975 0.86208 0.76034 0.75073 0.89285 0.89290 0.79203 0.91269 0.87698 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 2 C 0.13 1.23 1.13 -90.62 -0.10 1.13 16 3 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 4 C -0.18 -1.65 8.37 37.16 0.31 -1.33 16 5 O -0.36 -4.15 9.87 -40.32 -0.40 -4.55 16 6 C 0.68 8.82 8.22 54.06 0.44 9.27 16 7 O -0.57 -8.33 12.61 -19.28 -0.24 -8.57 16 8 N -0.63 -7.17 3.61 -184.13 -0.66 -7.83 16 9 C 0.16 1.74 8.14 -2.97 -0.02 1.72 16 10 C 0.08 0.78 1.87 -90.83 -0.17 0.61 16 11 O -0.52 -5.24 13.42 -35.23 -0.47 -5.72 16 12 C 0.50 6.18 7.16 -10.98 -0.08 6.10 16 13 O -0.53 -7.78 16.07 5.56 0.09 -7.69 16 14 N -0.70 -9.11 5.48 -61.47 -0.34 -9.45 16 15 C 0.10 1.57 6.15 -5.20 -0.03 1.54 16 16 C 0.43 8.71 7.85 -10.99 -0.09 8.62 16 17 O -0.58 -13.44 15.24 5.55 0.08 -13.36 16 18 N -0.57 -12.45 5.09 -10.97 -0.06 -12.50 16 19 C -0.31 -8.22 10.16 -14.93 -0.15 -8.37 16 20 H 0.12 3.67 7.39 -52.48 -0.39 3.28 16 21 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 22 N -0.87 -24.07 13.96 55.50 0.77 -23.30 16 23 Si 0.88 18.19 27.74 -169.99 -4.71 13.47 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.00 6.52 56.52 0.37 -4.63 16 27 C 0.10 0.91 8.27 -2.96 -0.02 0.89 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.97 5.88 -51.93 -0.31 0.67 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.12 1.21 7.38 -51.93 -0.38 0.82 16 39 H 0.39 2.83 7.38 45.56 0.34 3.17 16 40 H 0.41 5.11 5.71 -40.82 -0.23 4.87 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.37 7.15 5.76 -40.82 -0.24 6.91 16 44 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.11 0.88 8.09 -51.93 -0.42 0.46 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -33.52 385.22 -5.25 -38.78 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.75 Total: 15.50 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 0.63 Total: 19.41 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.28 Total: -53.08 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.94 Total: -39.88 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -4.71 Total: 13.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.52 -5.25 -38.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496975471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.655 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds