Wall clock time and date at job start Wed Apr 1 2020 01:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 C 1.53008 * 109.46966 * 239.99811 * 2 1 3 5 5 O 1.45200 * 109.47468 * 120.00137 * 2 1 3 6 6 C 1.34638 * 116.99775 * 59.99550 * 5 2 1 7 7 O 1.21505 * 120.00307 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99652 * 180.02562 * 6 5 2 9 9 C 1.47583 * 134.48847 * 179.97438 * 8 6 5 10 10 C 1.53947 * 86.11463 * 155.36171 * 9 8 6 11 11 O 1.42899 * 113.74623 * 269.26059 * 10 9 8 12 12 C 1.50700 * 113.74156 * 137.95167 * 10 9 8 13 13 O 1.21276 * 119.99960 * 335.00151 * 12 10 9 14 14 N 1.34781 * 120.00018 * 155.00171 * 12 10 9 15 15 C 1.46498 * 120.00002 * 180.02562 * 14 12 10 16 16 C 1.50694 * 109.47030 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00120 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99890 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00269 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99792 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00245 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00160 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99985 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47276 * 90.00878 * 23 21 19 25 25 H 1.48502 * 109.47103 * 210.00249 * 23 21 19 26 26 H 1.48496 * 109.47480 * 330.00550 * 23 21 19 27 27 C 1.47573 * 134.49478 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.46775 * 299.99504 * 1 2 3 29 29 H 1.08995 * 109.47317 * 60.00122 * 1 2 3 30 30 H 1.09002 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47165 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47145 * 300.00441 * 3 2 1 33 33 H 1.08996 * 109.47200 * 59.99701 * 3 2 1 34 34 H 1.08993 * 109.47417 * 300.00099 * 4 2 1 35 35 H 1.09001 * 109.46675 * 60.00156 * 4 2 1 36 36 H 1.09003 * 109.47041 * 179.97438 * 4 2 1 37 37 H 1.08996 * 113.77114 * 41.06515 * 9 8 6 38 38 H 1.08993 * 113.87279 * 269.67669 * 9 8 6 39 39 H 0.96696 * 114.00337 * 180.02562 * 11 10 9 40 40 H 0.96995 * 120.00101 * 359.97438 * 14 12 10 41 41 H 1.08998 * 109.47071 * 300.00464 * 15 14 12 42 42 H 1.09005 * 109.46815 * 59.99760 * 15 14 12 43 43 H 0.97007 * 120.00029 * 0.02562 * 18 16 15 44 44 H 0.97000 * 120.00605 * 180.02562 * 22 21 19 45 45 H 1.09003 * 113.77162 * 90.33892 * 27 8 6 46 46 H 1.09004 * 113.77283 * 318.93865 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4171 9 6 1.8716 -4.0474 2.8966 10 6 3.1927 -3.8570 3.6636 11 8 4.3495 -4.2537 2.9243 12 6 3.1678 -4.4154 5.0631 13 8 2.1131 -4.5334 5.6501 14 7 4.3175 -4.7837 5.6623 15 6 4.2931 -5.3271 7.0226 16 6 5.6978 -5.6580 7.4565 17 8 6.6278 -5.4592 6.7037 18 7 5.9207 -6.1751 8.6810 19 6 7.1986 -6.4757 9.0760 20 1 8.0268 -6.2986 8.4058 21 6 7.4283 -7.0092 10.3383 22 7 8.6532 -7.2978 10.7167 23 14 5.9959 -7.3162 11.4973 24 1 5.4726 -8.6896 11.2847 25 1 6.4565 -7.1740 12.9019 26 1 4.9200 -6.3291 11.2269 27 6 2.8992 -2.3470 3.5937 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.9256 -4.7979 2.1080 38 1 1.0025 -4.1712 3.5426 39 1 5.1815 -4.1361 3.4028 40 1 5.1609 -4.6898 5.1926 41 1 3.8673 -4.5882 7.7014 42 1 3.6847 -6.2313 7.0418 43 1 5.1768 -6.3345 9.2829 44 1 8.8136 -7.6706 11.5977 45 1 2.3313 -1.9701 4.4443 46 1 3.7740 -1.7395 3.3619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496975471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:29 Heat of formation + Delta-G solvation = -177.451709 kcal Electronic energy + Delta-G solvation = -30048.739732 eV Core-core repulsion = 25553.679011 eV Total energy + Delta-G solvation = -4495.060721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40953 -41.45783 -40.46824 -39.35138 -37.83962 -36.81288 -36.20271 -35.27599 -34.97328 -33.81586 -30.77987 -29.51906 -28.37498 -28.31064 -27.63575 -26.54786 -24.69866 -22.56402 -21.49836 -21.21261 -20.74472 -20.46326 -19.74361 -18.90209 -17.94902 -17.65915 -17.43909 -17.16373 -17.02534 -16.76786 -16.48385 -15.96186 -15.85684 -15.62500 -15.30312 -15.13665 -14.95582 -14.69640 -14.48415 -14.29470 -14.21142 -14.02456 -13.75203 -13.60696 -13.35454 -13.12462 -12.97953 -12.94378 -12.88542 -12.83573 -12.51163 -12.42721 -12.33715 -11.99260 -11.71856 -11.56122 -11.42544 -11.28960 -10.89329 -10.63963 -10.34913 -10.26614 -10.00821 -8.43872 -6.05928 0.77350 1.19420 1.32370 1.35866 1.45351 1.58886 1.81356 1.85290 2.22012 2.45627 2.75363 2.83989 2.99189 3.12793 3.50871 3.67607 3.74550 3.78811 3.93254 4.00482 4.03845 4.29681 4.33003 4.42099 4.42672 4.45305 4.58541 4.60865 4.62496 4.75752 4.79244 4.84996 4.87106 5.08509 5.12033 5.26980 5.31422 5.41734 5.49105 5.90163 6.10038 6.39245 6.48786 6.51264 6.80476 6.89904 7.12946 7.31027 7.79697 8.72337 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.001839 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.722078 B =15223.578007 C =15479.677169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.365 6.365 6 C 0.674 3.326 7 O -0.591 6.591 8 N -0.631 5.631 9 C 0.158 3.842 10 C 0.088 3.912 11 O -0.528 6.528 12 C 0.515 3.485 13 O -0.550 6.550 14 N -0.700 5.700 15 C 0.116 3.884 16 C 0.444 3.556 17 O -0.613 6.613 18 N -0.578 5.578 19 C -0.330 4.330 20 H 0.064 0.936 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.229 1.229 27 C 0.104 3.896 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.401 0.599 40 H 0.413 0.587 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.392 0.608 44 H 0.280 0.720 45 H 0.118 0.882 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.408 15.203 -16.534 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.279 6.279 6 C 0.431 3.569 7 O -0.482 6.482 8 N -0.373 5.373 9 C 0.037 3.963 10 C 0.042 3.958 11 O -0.337 6.337 12 C 0.299 3.701 13 O -0.428 6.428 14 N -0.355 5.355 15 C -0.011 4.011 16 C 0.232 3.768 17 O -0.499 6.499 18 N -0.218 5.218 19 C -0.459 4.459 20 H 0.082 0.918 21 C -0.209 4.209 22 N -0.566 5.566 23 Si 0.778 3.222 24 H -0.183 1.183 25 H -0.201 1.201 26 H -0.152 1.152 27 C -0.019 4.019 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.253 0.747 40 H 0.253 0.747 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.228 0.772 44 H 0.090 0.910 45 H 0.135 0.865 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.078 15.060 -17.391 29.259 hybrid contribution 0.733 -0.493 1.107 1.417 sum -17.345 14.567 -16.284 27.896 Atomic orbital electron populations 1.22468 0.93793 1.03579 1.03761 1.22499 0.94776 0.92777 0.81374 1.21881 1.02408 0.90424 1.04447 1.22475 1.01588 1.02104 0.97500 1.86323 1.71650 1.22441 1.47522 1.17503 0.77775 0.80648 0.80976 1.90893 1.42427 1.71080 1.43800 1.48363 1.54123 1.14349 1.20506 1.23270 0.94757 0.81952 0.96299 1.22746 0.89813 0.95897 0.87388 1.86615 1.16197 1.87126 1.43772 1.20741 0.83494 0.77908 0.87963 1.90741 1.30748 1.55284 1.66021 1.45663 1.10522 1.63319 1.15951 1.20982 0.93259 1.02053 0.84840 1.20522 0.91323 0.82440 0.82561 1.90535 1.46319 1.58891 1.54158 1.41932 1.07988 1.57241 1.14628 1.19021 0.84575 1.41458 1.00844 0.91751 1.26070 1.00278 0.95841 0.98725 1.69781 1.22236 1.42914 1.21683 0.85454 0.78441 0.80431 0.77845 1.18290 1.20148 1.15229 1.23981 0.95838 0.94485 0.87574 0.91878 0.88817 0.92172 0.91307 0.87737 0.91145 0.92214 0.88815 0.92113 0.88353 0.85606 0.74665 0.74730 0.86900 0.87351 0.77202 0.91003 0.86453 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 2 C 0.12 2.07 1.13 -10.79 -0.01 2.06 16 3 C -0.13 -1.41 8.85 71.98 0.64 -0.77 16 4 C -0.18 -3.07 8.37 71.98 0.60 -2.47 16 5 O -0.36 -8.09 9.87 -55.48 -0.55 -8.64 16 6 C 0.67 17.27 8.22 129.79 1.07 18.34 16 7 O -0.59 -17.75 12.61 19.83 0.25 -17.50 16 8 N -0.63 -13.83 3.61 -970.70 -3.50 -17.33 16 9 C 0.16 3.21 8.14 86.48 0.70 3.91 16 10 C 0.09 1.63 1.87 -10.87 -0.02 1.61 16 11 O -0.53 -9.88 13.42 -148.98 -2.00 -11.88 16 12 C 0.51 11.37 7.16 87.66 0.63 12.00 16 13 O -0.55 -14.61 16.07 -3.02 -0.05 -14.66 16 14 N -0.70 -16.62 5.48 -466.79 -2.56 -19.18 16 15 C 0.12 3.12 6.15 85.63 0.53 3.65 16 16 C 0.44 17.31 7.85 87.65 0.69 18.00 16 17 O -0.61 -28.62 15.24 -3.05 -0.05 -28.67 16 18 N -0.58 -24.56 5.09 -306.99 -1.56 -26.12 16 19 C -0.33 -17.85 10.16 84.04 0.85 -17.00 16 20 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 21 C -0.01 -0.48 5.50 84.92 0.47 -0.01 16 22 N -0.93 -53.01 13.96 21.66 0.30 -52.71 16 23 Si 0.96 36.38 27.74 68.60 1.90 38.29 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 25 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 26 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 27 C 0.10 1.71 8.27 86.49 0.71 2.42 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.35 5.88 -2.39 -0.01 1.33 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.13 2.39 7.38 -2.39 -0.02 2.37 16 39 H 0.40 5.24 7.38 -74.06 -0.55 4.69 16 40 H 0.41 9.60 5.71 -92.71 -0.53 9.07 16 41 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 43 H 0.39 13.80 5.76 -92.70 -0.53 13.27 16 44 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.12 1.67 8.09 -2.39 -0.02 1.65 16 46 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.49 385.22 -0.97 -77.46 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.62 Total: 41.54 kcal Atomic # 6 Polarization: 31.95 SS G_CDS: 7.46 Total: 39.41 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -7.32 Total: -115.34 kcal Atomic # 8 Polarization: -78.96 SS G_CDS: -2.39 Total: -81.36 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.90 Total: 38.29 kcal Total: -76.49 -0.97 -77.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496975471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.991 kcal (2) G-P(sol) polarization free energy of solvation -76.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds