Wall clock time and date at job start Wed Apr 1 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99935 * 2 1 4 4 C 1.50698 * 109.46949 * 293.95269 * 3 2 1 5 5 H 1.07999 * 120.00260 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00248 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99766 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47268 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47131 * 119.99778 * 8 6 4 11 11 H 1.48505 * 109.46925 * 239.99898 * 8 6 4 12 12 C 1.46897 * 111.00151 * 123.95197 * 2 1 3 13 13 C 1.52998 * 109.47301 * 66.04845 * 12 2 1 14 14 H 1.08995 * 109.46766 * 305.00042 * 13 12 2 15 15 O 1.42901 * 109.47146 * 65.00015 * 13 12 2 16 16 C 1.52997 * 109.47212 * 185.00156 * 13 12 2 17 17 N 1.46900 * 109.47346 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00195 * 180.02562 * 17 16 13 19 19 C 1.53009 * 109.47040 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.46983 * 64.99966 * 19 18 17 21 21 C 1.35700 * 116.99793 * 180.02562 * 20 19 18 22 22 C 1.38911 * 119.67085 * 179.97438 * 21 20 19 23 23 C 1.38377 * 119.12857 * 180.02562 * 22 21 20 24 24 C 1.38919 * 118.47122 * 359.97438 * 23 22 21 25 25 Cl 1.73595 * 120.36878 * 180.02562 * 24 23 22 26 26 C 1.38152 * 119.26543 * 359.97438 * 24 23 22 27 27 N 1.31974 * 120.81622 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.47175 * 296.04611 * 1 2 3 29 29 H 1.08998 * 109.46895 * 56.05201 * 1 2 3 30 30 H 1.09004 * 109.46757 * 176.04842 * 1 2 3 31 31 H 1.09007 * 109.47171 * 53.95142 * 3 2 1 32 32 H 1.08994 * 109.47553 * 173.95356 * 3 2 1 33 33 H 0.96999 * 120.00652 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47019 * 306.04713 * 12 2 1 35 35 H 1.08997 * 109.47362 * 186.05505 * 12 2 1 36 36 H 0.96703 * 113.99799 * 60.00131 * 15 13 12 37 37 H 1.09003 * 109.47460 * 59.99786 * 16 13 12 38 38 H 1.09005 * 109.47293 * 300.00149 * 16 13 12 39 39 H 1.00907 * 110.99543 * 303.95601 * 17 16 13 40 40 H 1.09000 * 109.47599 * 60.00173 * 18 17 16 41 41 H 1.09001 * 109.47214 * 299.99799 * 18 17 16 42 42 H 1.09000 * 109.46767 * 304.99917 * 19 18 17 43 43 H 1.09001 * 109.46908 * 184.99923 * 19 18 17 44 44 H 1.08002 * 120.43436 * 359.97438 * 22 21 20 45 45 H 1.07997 * 120.76306 * 179.97438 * 23 22 21 46 46 H 1.08000 * 119.59525 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0268 3.3495 -1.5285 7 7 2.7110 4.0023 -0.6146 8 14 1.5817 4.1872 -3.1378 9 1 0.8147 3.2444 -3.9910 10 1 0.7540 5.3881 -2.8584 11 1 2.8231 4.5948 -3.8435 12 6 1.9955 -0.7659 1.1376 13 6 1.6316 -2.2426 0.9704 14 1 0.5534 -2.3388 0.8433 15 8 2.2957 -2.7695 -0.1799 16 6 2.0701 -3.0198 2.2132 17 7 1.7201 -4.4374 2.0530 18 6 2.1266 -5.2163 3.2302 19 6 1.7469 -6.6845 3.0263 20 8 2.4991 -7.2242 1.9378 21 6 2.2798 -8.5258 1.6229 22 6 2.9807 -9.1070 0.5738 23 6 2.7479 -10.4349 0.2620 24 6 1.8170 -11.1387 1.0156 25 17 1.4869 -12.8071 0.6676 26 6 1.1575 -10.4965 2.0458 27 7 1.4018 -9.2285 2.3184 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 1.5610 1.9274 0.8309 32 1 3.0797 1.3445 0.1082 33 1 2.9849 4.9186 -0.7763 34 1 1.5611 -0.3871 2.0628 35 1 3.0797 -0.6609 1.1757 36 1 3.2603 -2.7166 -0.1359 37 1 1.5635 -2.6178 3.0907 38 1 3.1484 -2.9234 2.3403 39 1 0.7341 -4.5479 1.8694 40 1 1.6204 -4.8293 4.1145 41 1 3.2053 -5.1357 3.3645 42 1 0.6824 -6.7569 2.8036 43 1 1.9673 -7.2462 3.9341 44 1 3.6974 -8.5298 0.0084 45 1 3.2777 -10.9131 -0.5485 46 1 0.4330 -11.0387 2.6353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567891426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:26 Heat of formation + Delta-G solvation = -48.282065 kcal Electronic energy + Delta-G solvation = -26306.359891 eV Core-core repulsion = 22257.609551 eV Total energy + Delta-G solvation = -4048.750340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06442 -38.72809 -38.13512 -36.94707 -36.03753 -34.96860 -33.01855 -32.51001 -31.38337 -30.17365 -28.53126 -27.02454 -25.71767 -24.49499 -23.68223 -23.29065 -22.15835 -21.23733 -20.14267 -18.99767 -17.57268 -16.98615 -16.70990 -16.43505 -16.32360 -15.70983 -15.29281 -15.09061 -14.92144 -14.64261 -14.35691 -14.10215 -14.01338 -13.81286 -13.56917 -13.37679 -13.11676 -12.91047 -12.62868 -12.25304 -11.99942 -11.84827 -11.72887 -11.60099 -11.31843 -11.16584 -11.08087 -10.88572 -10.74664 -10.64568 -10.40401 -10.27041 -10.17290 -9.96371 -9.54361 -9.07903 -8.82331 -8.55465 -8.43095 -7.18497 -6.01966 -4.02753 0.53587 0.64070 1.59478 2.63937 3.17522 3.32179 3.39488 3.45329 3.76260 3.81792 4.22933 4.42965 4.43942 4.47608 4.66556 4.74086 4.78264 4.90235 5.08021 5.10952 5.16239 5.18987 5.26418 5.32943 5.38152 5.44659 5.48685 5.57965 5.63492 5.70533 5.77833 6.05756 6.19279 6.30336 6.41775 6.72424 6.76805 6.85378 7.16165 7.27102 7.28095 7.33186 7.81923 8.06564 8.16752 8.22742 8.56657 9.05702 9.61547 11.09069 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.001462 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.178003 B =19145.739662 C =19852.992581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.535 6.535 16 C 0.026 3.974 17 N -0.673 5.673 18 C 0.056 3.944 19 C 0.075 3.925 20 O -0.280 6.280 21 C 0.332 3.668 22 C -0.176 4.176 23 C -0.031 4.031 24 C -0.135 4.135 25 Cl -0.058 7.058 26 C 0.156 3.844 27 N -0.531 5.531 28 H 0.007 0.993 29 H 0.075 0.925 30 H 0.046 0.954 31 H -0.011 1.011 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.368 0.632 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.341 0.659 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -31.324 9.555 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.109 0.891 15 O -0.338 6.338 16 C -0.104 4.104 17 N -0.304 5.304 18 C -0.074 4.074 19 C -0.001 4.001 20 O -0.185 6.185 21 C 0.153 3.847 22 C -0.197 4.197 23 C -0.057 4.057 24 C -0.164 4.164 25 Cl -0.030 7.030 26 C -0.001 4.001 27 N -0.255 5.255 28 H 0.026 0.974 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.007 0.993 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.159 0.841 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.172 0.828 45 H 0.169 0.831 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.129 -31.126 9.150 32.463 hybrid contribution -0.307 0.872 0.408 1.010 sum -1.436 -30.254 9.558 31.761 Atomic orbital electron populations 1.22256 0.89095 0.99505 1.00375 1.62017 1.06735 1.17405 1.39155 1.19751 0.95302 0.81623 0.96621 1.21219 1.34596 0.96824 1.01680 0.91716 1.24997 0.95328 0.97363 0.97024 1.69966 1.38652 1.11364 1.34064 0.86435 0.78161 0.79252 0.83547 1.19607 1.21168 1.21009 1.22727 1.00567 0.93909 0.93278 1.21861 0.97524 0.90619 0.84359 0.89065 1.86595 1.22913 1.83876 1.40450 1.22747 1.01677 0.87843 0.98100 1.60329 1.23622 1.08828 1.37655 1.22083 1.02410 0.90694 0.92175 1.22733 0.95848 0.93349 0.88126 1.86421 1.61529 1.19621 1.50937 1.20041 0.89463 0.85180 0.89996 1.21149 1.04180 0.95064 0.99294 1.21362 0.94110 0.92754 0.97427 1.21804 1.04127 0.88225 1.02278 1.98379 1.94739 1.15256 1.94597 1.22376 0.95902 0.88814 0.92977 1.67531 1.19092 1.08396 1.30508 0.97415 0.90653 0.93535 0.99346 0.95336 0.93029 0.95612 0.91113 0.78543 0.94665 0.90536 0.84102 0.92995 0.89814 0.91403 0.91033 0.82844 0.83091 0.81628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.07 0.55 1.27 16 2 N -0.53 -11.52 4.70 -244.37 -1.15 -12.66 16 3 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 4 C -0.50 -14.39 8.46 -34.44 -0.29 -14.68 16 5 H 0.06 1.85 7.12 -52.49 -0.37 1.47 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.03 0.43 4.59 -3.83 -0.02 0.41 16 13 C 0.12 1.66 3.13 -26.73 -0.08 1.58 16 14 H 0.09 1.34 6.33 -51.93 -0.33 1.02 16 15 O -0.53 -8.56 13.15 -35.23 -0.46 -9.03 16 16 C 0.03 0.29 5.35 -3.83 -0.02 0.27 16 17 N -0.67 -7.00 6.32 -113.78 -0.72 -7.72 16 18 C 0.06 0.46 6.07 -3.82 -0.02 0.44 16 19 C 0.08 0.63 5.59 37.16 0.21 0.84 16 20 O -0.28 -2.91 10.06 -18.80 -0.19 -3.10 16 21 C 0.33 3.23 7.49 -17.13 -0.13 3.10 16 22 C -0.18 -1.40 10.04 -39.28 -0.39 -1.79 16 23 C -0.03 -0.20 9.97 -39.28 -0.39 -0.60 16 24 C -0.13 -0.96 6.34 -39.36 -0.25 -1.21 16 25 Cl -0.06 -0.37 28.99 -51.86 -1.50 -1.88 16 26 C 0.16 1.17 10.98 -17.52 -0.19 0.98 16 27 N -0.53 -4.95 9.21 -13.30 -0.12 -5.07 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 30 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 31 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 32 H 0.03 0.80 7.93 -51.93 -0.41 0.38 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.07 1.21 7.93 -51.93 -0.41 0.79 16 36 H 0.37 4.96 9.05 45.56 0.41 5.38 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.34 3.44 8.73 -39.29 -0.34 3.10 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 44 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -32.84 399.78 -9.90 -42.74 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.34 Total: 2.94 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.16 Total: -2.91 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -1.25 Total: -51.64 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.65 Total: -12.13 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.84 -9.90 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567891426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.538 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds