Wall clock time and date at job start Wed Apr 1 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99935 * 2 1 4 4 C 1.50698 * 109.46949 * 293.95269 * 3 2 1 5 5 H 1.07999 * 120.00260 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00248 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99766 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47268 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47131 * 119.99778 * 8 6 4 11 11 H 1.48505 * 109.46925 * 239.99898 * 8 6 4 12 12 C 1.46897 * 111.00151 * 123.95197 * 2 1 3 13 13 C 1.52998 * 109.47301 * 66.04845 * 12 2 1 14 14 H 1.08995 * 109.46766 * 305.00042 * 13 12 2 15 15 O 1.42901 * 109.47146 * 65.00015 * 13 12 2 16 16 C 1.52997 * 109.47212 * 185.00156 * 13 12 2 17 17 N 1.46900 * 109.47346 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00195 * 180.02562 * 17 16 13 19 19 C 1.53009 * 109.47040 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.46983 * 64.99966 * 19 18 17 21 21 C 1.35700 * 116.99793 * 180.02562 * 20 19 18 22 22 C 1.38911 * 119.67085 * 179.97438 * 21 20 19 23 23 C 1.38377 * 119.12857 * 180.02562 * 22 21 20 24 24 C 1.38919 * 118.47122 * 359.97438 * 23 22 21 25 25 Cl 1.73595 * 120.36878 * 180.02562 * 24 23 22 26 26 C 1.38152 * 119.26543 * 359.97438 * 24 23 22 27 27 N 1.31974 * 120.81622 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.47175 * 296.04611 * 1 2 3 29 29 H 1.08998 * 109.46895 * 56.05201 * 1 2 3 30 30 H 1.09004 * 109.46757 * 176.04842 * 1 2 3 31 31 H 1.09007 * 109.47171 * 53.95142 * 3 2 1 32 32 H 1.08994 * 109.47553 * 173.95356 * 3 2 1 33 33 H 0.96999 * 120.00652 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47019 * 306.04713 * 12 2 1 35 35 H 1.08997 * 109.47362 * 186.05505 * 12 2 1 36 36 H 0.96703 * 113.99799 * 60.00131 * 15 13 12 37 37 H 1.09003 * 109.47460 * 59.99786 * 16 13 12 38 38 H 1.09005 * 109.47293 * 300.00149 * 16 13 12 39 39 H 1.00907 * 110.99543 * 303.95601 * 17 16 13 40 40 H 1.09000 * 109.47599 * 60.00173 * 18 17 16 41 41 H 1.09001 * 109.47214 * 299.99799 * 18 17 16 42 42 H 1.09000 * 109.46767 * 304.99917 * 19 18 17 43 43 H 1.09001 * 109.46908 * 184.99923 * 19 18 17 44 44 H 1.08002 * 120.43436 * 359.97438 * 22 21 20 45 45 H 1.07997 * 120.76306 * 179.97438 * 23 22 21 46 46 H 1.08000 * 119.59525 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0268 3.3495 -1.5285 7 7 2.7110 4.0023 -0.6146 8 14 1.5817 4.1872 -3.1378 9 1 0.8147 3.2444 -3.9910 10 1 0.7540 5.3881 -2.8584 11 1 2.8231 4.5948 -3.8435 12 6 1.9955 -0.7659 1.1376 13 6 1.6316 -2.2426 0.9704 14 1 0.5534 -2.3388 0.8433 15 8 2.2957 -2.7695 -0.1799 16 6 2.0701 -3.0198 2.2132 17 7 1.7201 -4.4374 2.0530 18 6 2.1266 -5.2163 3.2302 19 6 1.7469 -6.6845 3.0263 20 8 2.4991 -7.2242 1.9378 21 6 2.2798 -8.5258 1.6229 22 6 2.9807 -9.1070 0.5738 23 6 2.7479 -10.4349 0.2620 24 6 1.8170 -11.1387 1.0156 25 17 1.4869 -12.8071 0.6676 26 6 1.1575 -10.4965 2.0458 27 7 1.4018 -9.2285 2.3184 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 1.5610 1.9274 0.8309 32 1 3.0797 1.3445 0.1082 33 1 2.9849 4.9186 -0.7763 34 1 1.5611 -0.3871 2.0628 35 1 3.0797 -0.6609 1.1757 36 1 3.2603 -2.7166 -0.1359 37 1 1.5635 -2.6178 3.0907 38 1 3.1484 -2.9234 2.3403 39 1 0.7341 -4.5479 1.8694 40 1 1.6204 -4.8293 4.1145 41 1 3.2053 -5.1357 3.3645 42 1 0.6824 -6.7569 2.8036 43 1 1.9673 -7.2462 3.9341 44 1 3.6974 -8.5298 0.0084 45 1 3.2777 -10.9131 -0.5485 46 1 0.4330 -11.0387 2.6353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567891426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:25 Heat of formation + Delta-G solvation = -75.437082 kcal Electronic energy + Delta-G solvation = -26307.537421 eV Core-core repulsion = 22257.609551 eV Total energy + Delta-G solvation = -4049.927870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66669 -39.64483 -39.13946 -37.56590 -37.31855 -36.07876 -34.61380 -33.58856 -32.20685 -31.06348 -29.77810 -28.77785 -27.14710 -25.37869 -24.73128 -24.16323 -22.85728 -22.63584 -21.71180 -19.61925 -18.56958 -18.20427 -17.55566 -17.46813 -17.24633 -16.99480 -16.73464 -16.08396 -15.96182 -15.74819 -15.66322 -15.22232 -15.00571 -14.67538 -14.57961 -14.33089 -14.26634 -13.86869 -13.69066 -13.49450 -13.26427 -12.95655 -12.89574 -12.70835 -12.59726 -12.50998 -12.39328 -12.29920 -12.21583 -11.98673 -11.80332 -11.60847 -11.36755 -10.96010 -10.76519 -10.62824 -10.62567 -9.42413 -9.32142 -8.94819 -8.21155 -6.30909 -0.05290 0.08453 1.05186 1.40526 1.41540 1.55402 2.03650 2.40187 2.58164 2.90765 3.11388 3.20091 3.44085 3.72950 3.74270 3.88067 3.91356 3.96214 4.07992 4.11610 4.21796 4.32017 4.42621 4.49328 4.54285 4.58012 4.64559 4.69293 4.72164 4.73659 4.78862 4.85945 4.91572 5.06524 5.16029 5.18546 5.23783 5.31804 5.64850 5.95940 6.05684 6.20124 6.32493 6.40564 6.64764 6.66249 6.85543 7.06416 7.38942 8.89987 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.001462 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.178003 B =19145.739662 C =19852.992581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.025 3.975 13 C 0.128 3.872 14 H 0.090 0.910 15 O -0.554 6.554 16 C 0.039 3.961 17 N -0.685 5.685 18 C 0.061 3.939 19 C 0.078 3.922 20 O -0.298 6.298 21 C 0.311 3.689 22 C -0.184 4.184 23 C -0.027 4.027 24 C -0.136 4.136 25 Cl -0.051 7.051 26 C 0.149 3.851 27 N -0.545 5.545 28 H 0.012 0.988 29 H 0.054 0.946 30 H 0.076 0.924 31 H -0.038 1.038 32 H 0.004 0.996 33 H 0.264 0.736 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.378 0.622 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.342 0.658 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.162 0.838 45 H 0.175 0.825 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 -32.772 9.295 34.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.104 4.104 13 C 0.068 3.932 14 H 0.107 0.893 15 O -0.359 6.359 16 C -0.091 4.091 17 N -0.316 5.316 18 C -0.068 4.068 19 C 0.002 3.998 20 O -0.204 6.204 21 C 0.132 3.868 22 C -0.204 4.204 23 C -0.052 4.052 24 C -0.166 4.166 25 Cl -0.022 7.022 26 C -0.008 4.008 27 N -0.270 5.270 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.094 0.906 31 H -0.021 1.021 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.225 0.775 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.161 0.839 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.180 0.820 45 H 0.192 0.808 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.616 -32.606 8.903 33.839 hybrid contribution -0.156 1.209 0.523 1.327 sum -1.772 -31.397 9.426 32.829 Atomic orbital electron populations 1.22229 0.87897 1.01031 0.99652 1.61926 1.07937 1.14867 1.41777 1.19401 0.93674 0.83950 0.94903 1.21511 1.34781 0.97491 1.02410 0.92148 1.25903 0.95002 0.98021 1.00696 1.70081 1.39471 1.11858 1.36106 0.85330 0.78105 0.78150 0.79000 1.18938 1.20286 1.20322 1.22837 1.00309 0.95350 0.91937 1.21748 0.97284 0.88708 0.85452 0.89255 1.86556 1.23928 1.83881 1.41563 1.22519 1.01957 0.88006 0.96580 1.60281 1.23868 1.08387 1.39109 1.22093 1.02439 0.90269 0.92003 1.22755 0.95515 0.93410 0.88081 1.86388 1.62156 1.20232 1.51661 1.20292 0.90371 0.85172 0.90918 1.21336 1.04308 0.95701 0.99090 1.21647 0.93716 0.92249 0.97624 1.21899 1.03972 0.88580 1.02114 1.98383 1.94692 1.14631 1.94523 1.22730 0.96231 0.88452 0.93344 1.67512 1.19388 1.09145 1.30952 0.96966 0.92742 0.90565 1.02074 0.97768 0.92674 0.94894 0.91391 0.77472 0.93361 0.90162 0.83935 0.91076 0.90005 0.91719 0.90257 0.82040 0.80788 0.79762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.75 16 2 N -0.54 -23.68 4.70 -927.06 -4.36 -28.04 16 3 C 0.21 11.20 4.72 85.56 0.40 11.61 16 4 C -0.52 -30.34 8.46 25.60 0.22 -30.13 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.09 5.46 84.66 0.46 0.56 16 7 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 8 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.02 0.84 4.59 86.30 0.40 1.24 16 13 C 0.13 3.48 3.13 30.59 0.10 3.58 16 14 H 0.09 2.47 6.33 -2.39 -0.02 2.45 16 15 O -0.55 -17.21 13.15 -148.98 -1.96 -19.17 16 16 C 0.04 0.80 5.35 86.30 0.46 1.26 16 17 N -0.68 -13.16 6.32 -513.88 -3.25 -16.41 16 18 C 0.06 0.90 6.07 86.31 0.52 1.43 16 19 C 0.08 1.23 5.59 71.99 0.40 1.64 16 20 O -0.30 -6.08 10.06 -90.20 -0.91 -6.99 16 21 C 0.31 5.91 7.49 84.79 0.63 6.54 16 22 C -0.18 -2.77 10.04 22.46 0.23 -2.55 16 23 C -0.03 -0.32 9.97 22.47 0.22 -0.09 16 24 C -0.14 -1.74 6.34 22.41 0.14 -1.60 16 25 Cl -0.05 -0.57 28.99 -2.72 -0.08 -0.65 16 26 C 0.15 2.08 10.98 84.65 0.93 3.00 16 27 N -0.55 -9.81 9.21 -308.86 -2.85 -12.66 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 2.34 6.76 -2.39 -0.02 2.33 16 30 H 0.08 2.52 6.37 -2.38 -0.02 2.51 16 31 H -0.04 -2.24 8.12 -2.38 -0.02 -2.26 16 32 H 0.00 0.24 7.93 -2.39 -0.02 0.23 16 33 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 35 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 36 H 0.38 9.92 9.05 -74.06 -0.67 9.25 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.34 6.38 8.73 -89.69 -0.78 5.60 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 43 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 44 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 46 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -70.61 399.78 -5.25 -75.86 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.45 Total: 18.20 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.29 Total: -0.78 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -10.17 Total: -113.44 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -2.87 Total: -26.16 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -70.61 -5.25 -75.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567891426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.427 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds