Wall clock time and date at job start Wed Apr 1 2020 01:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38344 * 120.77347 * 2 1 4 4 N 1.32364 * 119.29022 * 179.97438 * 3 2 1 5 5 C 1.32540 * 120.97925 * 0.02562 * 4 3 2 6 6 N 1.38419 * 119.15248 * 179.97438 * 5 4 3 7 7 C 1.48556 * 111.00278 * 244.57988 * 6 5 4 8 8 C 1.54376 * 104.59718 * 159.04014 * 7 6 5 9 9 C 1.54259 * 105.06074 * 336.14572 * 8 7 6 10 10 O 1.42900 * 110.32141 * 118.89478 * 9 8 7 11 11 C 1.50696 * 110.32292 * 241.10371 * 9 8 7 12 12 H 1.07997 * 120.00202 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00012 * 179.97438 * 11 9 8 14 14 N 1.31522 * 119.99971 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00302 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47103 * 90.00572 * 15 13 11 17 17 H 1.48497 * 109.47297 * 209.99963 * 15 13 11 18 18 H 1.48497 * 109.47178 * 330.00451 * 15 13 11 19 19 C 1.48557 * 110.99787 * 359.97438 * 6 5 4 20 20 N 1.32343 * 121.69644 * 0.24970 * 5 4 3 21 21 C 1.33146 * 120.60333 * 359.48635 * 20 5 4 22 22 C 1.48240 * 120.51107 * 180.25272 * 21 20 5 23 23 C 1.39411 * 120.14332 * 230.87040 * 22 21 20 24 24 C 1.37956 * 119.89922 * 179.72385 * 23 22 21 25 25 C 1.38393 * 120.18543 * 0.57443 * 24 23 22 26 26 C 1.38222 * 120.28440 * 359.69791 * 25 24 23 27 27 C 1.38308 * 120.10255 * 0.02562 * 26 25 24 28 28 F 1.35101 * 120.09567 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47273 * 95.59323 * 1 2 3 30 30 H 1.08995 * 109.46905 * 215.59435 * 1 2 3 31 31 H 1.09006 * 109.47099 * 335.59532 * 1 2 3 32 32 H 1.08003 * 120.35916 * 359.96217 * 3 2 1 33 33 H 1.09003 * 110.41067 * 40.25982 * 7 6 5 34 34 H 1.09009 * 110.40936 * 277.81976 * 7 6 5 35 35 H 1.08999 * 110.32068 * 217.25239 * 8 7 6 36 36 H 1.09001 * 110.32108 * 95.04520 * 8 7 6 37 37 H 0.96700 * 113.99577 * 179.97438 * 10 9 8 38 38 H 0.97001 * 120.00314 * 179.97438 * 14 13 11 39 39 H 1.09002 * 110.41639 * 82.18376 * 19 6 5 40 40 H 1.08997 * 110.41490 * 319.73653 * 19 6 5 41 41 H 1.08003 * 120.04582 * 359.97438 * 23 22 21 42 42 H 1.08007 * 119.90792 * 180.27296 * 24 23 22 43 43 H 1.07995 * 119.85288 * 179.71709 * 25 24 23 44 44 H 1.07998 * 119.95222 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2148 1.1886 0.0000 4 7 3.5380 1.1544 0.0005 5 6 4.1906 0.0008 0.0005 6 7 5.5748 0.0091 0.0005 7 6 6.1108 -0.5830 -1.2521 8 6 7.5493 -0.0330 -1.3579 9 6 7.5415 1.2710 -0.5339 10 8 8.4664 1.1778 0.5515 11 6 7.8807 2.4474 -1.4126 12 1 8.0848 2.2963 -2.4622 13 6 7.9293 3.7168 -0.8766 14 7 7.6802 3.9010 0.4016 15 14 8.3504 5.1749 -1.9656 16 1 7.1037 5.7363 -2.5451 17 1 9.0327 6.2164 -1.1563 18 1 9.2495 4.7313 -3.0610 19 6 6.0988 1.3992 -0.0001 20 7 3.5529 -1.1589 -0.0049 21 6 2.2221 -1.2006 -0.0003 22 6 1.5099 -2.5007 -0.0007 23 6 0.5030 -2.7471 -0.9329 24 6 -0.1526 -3.9609 -0.9325 25 6 0.1783 -4.9301 -0.0017 26 6 1.1715 -4.6919 0.9296 27 6 1.8403 -3.4813 0.9363 28 9 2.8107 -3.2485 1.8470 29 1 -0.3634 -0.1002 -1.0228 30 1 -0.3633 -0.8356 0.5981 31 1 -0.3633 0.9359 0.4246 32 1 1.6934 2.1345 -0.0006 33 1 5.5173 -0.2626 -2.1084 34 1 6.1238 -1.6709 -1.1831 35 1 7.7984 0.1778 -2.3979 36 1 8.2586 -0.7442 -0.9345 37 1 8.5046 1.9701 1.1046 38 1 7.7148 4.7940 0.7787 39 1 6.1029 1.8044 1.0118 40 1 5.5035 2.0296 -0.6606 41 1 0.2395 -1.9903 -1.6570 42 1 -0.9297 -4.1535 -1.6575 43 1 -0.3415 -5.8767 -0.0033 44 1 1.4257 -5.4522 1.6533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:50 Heat of formation + Delta-G solvation = -19.493805 kcal Electronic energy + Delta-G solvation = -29869.156557 eV Core-core repulsion = 25700.627114 eV Total energy + Delta-G solvation = -4168.529443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.93533 -42.40571 -40.32343 -39.55961 -36.90535 -35.24155 -34.56848 -34.15928 -31.97907 -31.48786 -31.37564 -29.47869 -27.90083 -26.51020 -25.80248 -24.06798 -23.68955 -23.08938 -21.93591 -21.23799 -19.38245 -19.00735 -18.61284 -18.16505 -17.33700 -17.01709 -16.93248 -16.64852 -16.60988 -16.01789 -15.69893 -15.68588 -15.32550 -15.13566 -14.84706 -14.56435 -14.32075 -14.23469 -13.97369 -13.54004 -13.49675 -13.41781 -13.27681 -13.01675 -12.85649 -12.79243 -12.63928 -12.37805 -12.27158 -12.24216 -12.16384 -11.90331 -11.87697 -11.17231 -10.91321 -10.63994 -10.24794 -10.15777 -9.98790 -9.71762 -9.29713 -8.24575 -6.41067 -0.46655 -0.07571 0.21360 0.41689 1.40520 1.41799 1.52427 2.20342 2.38502 2.47185 2.73812 2.96880 3.00909 3.24108 3.33655 3.60345 3.76449 3.86616 3.89261 3.93794 4.00305 4.08100 4.17027 4.19063 4.33112 4.35310 4.46491 4.63878 4.75656 4.77867 4.83462 4.93908 4.97890 5.00661 5.06337 5.10224 5.13492 5.23711 5.31527 5.35419 5.41589 5.42343 5.49286 5.71033 5.74657 5.88838 6.08958 6.26430 6.65680 7.10179 7.30583 7.43050 8.82024 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.002941 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.582490 B = 9517.167489 C =10200.532411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.199 4.199 3 C 0.156 3.844 4 N -0.569 5.569 5 C 0.466 3.534 6 N -0.464 5.464 7 C 0.071 3.929 8 C -0.106 4.106 9 C 0.234 3.766 10 O -0.594 6.594 11 C -0.560 4.560 12 H 0.063 0.937 13 C 0.027 3.973 14 N -0.913 5.913 15 Si 0.966 3.034 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.080 3.920 20 N -0.532 5.532 21 C 0.208 3.792 22 C -0.101 4.101 23 C -0.063 4.063 24 C -0.120 4.120 25 C -0.067 4.067 26 C -0.161 4.161 27 C 0.096 3.904 28 F -0.155 7.155 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.200 0.800 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.376 0.624 38 H 0.271 0.729 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.153 0.847 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.270 -14.281 -3.739 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.205 4.205 3 C -0.010 4.010 4 N -0.288 5.288 5 C 0.110 3.890 6 N -0.184 5.184 7 C -0.055 4.055 8 C -0.144 4.144 9 C 0.193 3.807 10 O -0.403 6.403 11 C -0.598 4.598 12 H 0.082 0.918 13 C -0.174 4.174 14 N -0.553 5.553 15 Si 0.791 3.209 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.047 4.047 20 N -0.250 5.250 21 C 0.061 3.939 22 C -0.103 4.103 23 C -0.082 4.082 24 C -0.137 4.137 25 C -0.085 4.085 26 C -0.180 4.180 27 C 0.076 3.924 28 F -0.134 7.134 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.217 0.783 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.171 0.829 42 H 0.191 0.809 43 H 0.191 0.809 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.858 -15.015 -3.348 26.729 hybrid contribution 0.019 2.197 0.094 2.200 sum -21.839 -12.818 -3.254 25.530 Atomic orbital electron populations 1.20781 0.85464 1.04514 1.04279 1.21875 1.01067 0.92656 1.04869 1.23639 0.87948 0.99950 0.89450 1.68496 1.12238 1.30005 1.18069 1.21359 0.91858 0.84352 0.91419 1.62010 1.01238 1.20174 1.35010 1.22925 0.95148 1.00042 0.87350 1.22360 0.94860 0.96663 1.00527 1.19567 0.84210 0.92566 0.84328 1.86124 1.64916 1.44305 1.44963 1.21940 1.49349 0.92495 0.96065 0.91834 1.25816 0.93430 1.01568 0.96546 1.69729 1.48846 1.23796 1.12909 0.85436 0.78366 0.78400 0.78693 1.20066 1.20509 1.19286 1.23366 0.97246 0.83966 1.00143 1.68111 1.10492 1.28709 1.17641 1.20301 0.87807 0.94084 0.91680 1.18558 1.00304 0.91230 1.00196 1.21386 0.92160 0.99034 0.95592 1.21603 1.00603 0.91799 0.99729 1.21617 0.94146 1.00843 0.91902 1.21413 0.98639 0.94912 1.03006 1.18279 0.88816 0.95776 0.89544 1.91495 1.61548 1.95096 1.65258 0.88262 0.90580 0.89215 0.78331 0.93749 0.88713 0.89648 0.91064 0.77424 0.91978 0.93456 0.93115 0.82891 0.80862 0.80922 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 8.51 71.24 0.61 -0.71 16 2 C -0.20 -5.19 5.91 -19.47 -0.12 -5.31 16 3 C 0.16 4.80 10.97 84.64 0.93 5.73 16 4 N -0.57 -24.03 8.40 -198.19 -1.67 -25.69 16 5 C 0.47 20.89 6.94 261.53 1.81 22.71 16 6 N -0.46 -22.49 5.46 -694.94 -3.80 -26.29 16 7 C 0.07 3.06 6.27 86.45 0.54 3.61 16 8 C -0.11 -4.86 6.44 31.49 0.20 -4.66 16 9 C 0.23 12.54 1.06 -10.65 -0.01 12.53 16 10 O -0.59 -33.93 12.95 -148.98 -1.93 -35.86 16 11 C -0.56 -31.12 8.11 25.60 0.21 -30.92 16 12 H 0.06 3.43 7.36 -2.91 -0.02 3.41 16 13 C 0.03 1.47 5.26 84.65 0.45 1.92 16 14 N -0.91 -51.15 10.82 21.45 0.23 -50.92 16 15 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 C 0.08 4.26 4.35 86.45 0.38 4.64 16 20 N -0.53 -21.64 9.84 -187.05 -1.84 -23.48 16 21 C 0.21 6.62 6.06 41.97 0.25 6.87 16 22 C -0.10 -2.49 4.93 -20.01 -0.10 -2.59 16 23 C -0.06 -0.94 8.14 22.49 0.18 -0.76 16 24 C -0.12 -1.07 10.03 22.24 0.22 -0.85 16 25 C -0.07 -0.65 10.04 22.30 0.22 -0.42 16 26 C -0.16 -2.72 10.02 22.28 0.22 -2.50 16 27 C 0.10 2.50 7.26 22.61 0.16 2.66 16 28 F -0.16 -5.35 16.54 44.97 0.74 -4.61 16 29 H 0.10 0.92 7.30 -2.39 -0.02 0.90 16 30 H 0.08 1.03 6.99 -2.39 -0.02 1.02 16 31 H 0.09 0.97 8.07 -2.38 -0.02 0.95 16 32 H 0.20 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.04 1.85 7.97 -2.39 -0.02 1.83 16 34 H 0.09 3.74 8.14 -2.38 -0.02 3.72 16 35 H 0.09 3.63 7.42 -2.39 -0.02 3.62 16 36 H 0.07 3.18 7.98 -2.39 -0.02 3.16 16 37 H 0.38 21.88 7.05 -74.06 -0.52 21.36 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.05 2.77 7.97 -2.39 -0.02 2.76 16 40 H 0.05 2.84 6.82 -2.39 -0.02 2.83 16 41 H 0.15 1.67 6.84 -2.91 -0.02 1.65 16 42 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 44 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -76.17 365.61 0.47 -75.70 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.53 Total: 34.04 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 6.17 Total: 11.97 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -7.07 Total: -126.37 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.93 Total: -35.86 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.74 Total: -4.61 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -76.17 0.47 -75.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.210 kcal (2) G-P(sol) polarization free energy of solvation -76.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds