Wall clock time and date at job start Wed Apr 1 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00345 * 85.00030 * 3 2 1 5 5 C 1.50701 * 109.46992 * 274.99969 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 S 1.65605 * 119.99873 * 265.00002 * 3 2 1 14 14 O 1.42099 * 106.40321 * 23.53841 * 13 3 2 15 15 O 1.42097 * 106.40157 * 156.45960 * 13 3 2 16 16 N 1.65600 * 107.21849 * 270.00247 * 13 3 2 17 17 C 1.46497 * 120.00355 * 64.99677 * 16 13 3 18 18 H 1.09000 * 109.44941 * 24.95680 * 17 16 13 19 19 C 1.53108 * 109.45381 * 144.88835 * 17 16 13 20 20 C 1.53440 * 109.54714 * 190.09547 * 19 17 16 21 21 C 1.50537 * 108.32098 * 310.25402 * 20 19 17 22 22 C 1.35585 * 124.29834 * 16.48872 * 21 20 19 23 23 N 1.32913 * 106.67463 * 180.14353 * 22 21 20 24 24 N 1.29016 * 108.63297 * 359.90438 * 23 22 21 25 25 N 1.29106 * 110.26391 * 0.02562 * 24 23 22 26 26 C 1.46504 * 126.01249 * 180.02562 * 25 24 23 27 27 C 1.50598 * 124.16478 * 0.16125 * 22 21 20 28 28 H 1.08998 * 109.47325 * 300.00280 * 1 2 3 29 29 H 1.09001 * 109.47323 * 59.99729 * 1 2 3 30 30 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47325 * 239.99720 * 2 1 3 32 32 H 1.09000 * 109.47454 * 119.99496 * 2 1 3 33 33 H 1.09002 * 109.47391 * 154.99959 * 4 3 2 34 34 H 1.09001 * 109.46813 * 35.00015 * 4 3 2 35 35 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 36 36 H 0.97006 * 119.99802 * 245.00228 * 16 13 3 37 37 H 1.09003 * 109.45728 * 310.11486 * 19 17 16 38 38 H 1.09007 * 109.45663 * 70.05914 * 19 17 16 39 39 H 1.09003 * 109.67226 * 190.56200 * 20 19 17 40 40 H 1.09001 * 109.71629 * 69.97748 * 20 19 17 41 41 H 1.08993 * 109.46861 * 269.97863 * 26 25 24 42 42 H 1.09005 * 109.46710 * 29.97522 * 26 25 24 43 43 H 1.08992 * 109.47223 * 149.97403 * 26 25 24 44 44 H 1.09008 * 109.68611 * 256.82434 * 27 22 21 45 45 H 1.09001 * 109.72338 * 136.26767 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4674 2.7943 8 7 1.7680 3.6310 3.5749 9 14 -0.9168 4.2355 3.2553 10 1 -1.9379 3.1683 3.4086 11 1 -0.7749 4.9731 4.5364 12 1 -1.3405 5.1764 2.1873 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4449 15 8 2.3056 3.5186 -1.1999 16 7 4.0143 1.8136 -1.7138 17 6 4.4656 0.4413 -1.9569 18 1 3.6368 -0.1498 -2.3465 19 6 5.6069 0.4530 -2.9775 20 6 5.9117 -0.9832 -3.4234 21 6 6.0651 -1.8380 -2.1938 22 6 5.6431 -1.4790 -0.9562 23 7 5.9546 -2.4817 -0.1413 24 7 6.5323 -3.4077 -0.8293 25 7 6.6164 -3.0573 -2.0690 26 6 7.2092 -3.8491 -3.1497 27 6 4.9586 -0.1751 -0.6413 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.9080 2.8919 1.1512 34 1 2.4690 1.4183 2.0480 35 1 1.6882 4.1509 4.3900 36 1 4.6541 2.5428 -1.7198 37 1 5.3139 1.0474 -3.8430 38 1 6.4965 0.8887 -2.5225 39 1 6.8365 -1.0000 -4.0001 40 1 5.0910 -1.3609 -4.0333 41 1 8.2699 -3.6126 -3.2336 42 1 7.0898 -4.9101 -2.9302 43 1 6.7090 -3.6139 -4.0890 44 1 5.6635 0.5027 -0.1595 45 1 4.1113 -0.3548 0.0204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594479019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:30 Heat of formation + Delta-G solvation = 17.378493 kcal Electronic energy + Delta-G solvation = -29500.467331 eV Core-core repulsion = 25488.900704 eV Total energy + Delta-G solvation = -4011.566627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.54857 -38.15340 -36.56940 -36.02610 -35.16570 -35.12227 -33.53594 -32.55075 -30.52406 -29.78020 -28.98348 -27.98844 -26.70982 -24.20611 -22.84978 -22.59825 -21.86032 -21.54697 -20.09996 -18.97005 -17.41982 -17.13859 -17.01492 -16.75510 -16.33567 -15.83307 -15.27075 -14.90437 -14.36087 -14.27251 -14.08646 -14.03456 -13.64514 -13.55573 -13.19809 -13.11381 -13.01428 -12.57561 -12.44092 -12.17624 -11.87139 -11.81870 -11.52670 -11.47877 -11.43965 -11.40159 -11.24494 -11.03524 -10.94943 -10.93129 -10.72844 -10.40704 -10.37562 -10.11588 -9.88148 -9.61130 -9.43183 -8.98746 -8.38349 -8.06514 -6.00962 -4.03829 1.21549 1.37308 2.11062 2.43979 3.37032 3.40687 3.41674 3.45771 3.92262 4.09691 4.19817 4.45215 4.47785 4.49148 4.55354 4.56525 4.78649 4.83585 4.95997 5.04212 5.11748 5.17356 5.33695 5.36218 5.43730 5.54372 5.61932 5.70316 5.79399 5.89197 5.90911 5.99955 6.15701 6.20512 6.24200 6.37394 6.45548 6.73582 7.02457 7.09600 7.31049 7.47535 7.67536 7.96640 8.26766 8.38415 8.97795 9.60553 11.07709 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.003368 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.817666 B = 8311.286973 C = 8876.835553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.777 3.223 14 O -0.996 6.996 15 O -0.963 6.963 16 N -1.128 6.128 17 C 0.156 3.844 18 H 0.094 0.906 19 C -0.119 4.119 20 C -0.041 4.041 21 C -0.027 4.027 22 C -0.005 4.005 23 N -0.255 5.255 24 N -0.098 5.098 25 N -0.287 5.287 26 C 0.081 3.919 27 C -0.058 4.058 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.263 0.737 36 H 0.414 0.586 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.281 -12.573 -16.538 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.007 3.993 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 S 2.785 3.215 14 O -0.979 6.979 15 O -0.947 6.947 16 N -0.885 5.885 17 C 0.047 3.953 18 H 0.112 0.888 19 C -0.159 4.159 20 C -0.081 4.081 21 C -0.161 4.161 22 C -0.146 4.146 23 N -0.120 5.120 24 N -0.076 5.076 25 N -0.079 5.079 26 C -0.060 4.060 27 C -0.099 4.099 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.247 0.753 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.961 -13.276 -15.882 23.907 hybrid contribution -0.396 1.132 -0.160 1.210 sum 11.565 -12.145 -16.042 23.207 Atomic orbital electron populations 1.22250 0.96295 1.00827 1.03704 1.20999 0.94982 0.82317 1.01038 1.57745 1.78307 1.22928 1.24335 1.19046 0.97445 0.90932 0.78858 1.21490 0.96374 1.31879 1.06750 0.91977 1.24919 0.96746 0.96072 0.96272 1.69907 1.29266 1.40653 1.13663 0.86628 0.84012 0.79542 0.77669 1.20217 1.21285 1.20093 1.02087 0.72799 0.73405 0.73172 1.93536 1.70326 1.76510 1.57559 1.93648 1.85070 1.30358 1.85590 1.56370 1.29881 1.13473 1.88747 1.20716 0.97887 0.82717 0.93992 0.88787 1.21867 0.98996 0.95229 0.99758 1.20146 1.03001 0.93049 0.91912 1.21860 1.05234 0.89121 0.99858 1.21585 1.04937 0.98494 0.89600 1.74864 1.11815 0.99220 1.26060 1.78606 1.19744 1.21611 0.87637 1.46826 1.39043 1.13039 1.09011 1.22238 0.99624 0.97038 0.87107 1.20627 1.00978 0.89827 0.98480 0.90189 0.92837 0.93155 0.92417 0.90852 0.94496 0.94574 0.92723 0.75325 0.89364 0.90365 0.89706 0.89214 0.89132 0.87988 0.88376 0.88801 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.83 37.15 0.37 -2.68 16 2 C 0.13 2.29 4.83 -4.04 -0.02 2.28 16 3 N -0.99 -19.68 2.78 -115.67 -0.32 -20.00 16 4 C 0.26 6.28 5.12 -5.19 -0.03 6.25 16 5 C -0.53 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.70 6.89 -52.49 -0.36 1.34 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 S 2.78 52.38 6.03 -107.50 -0.65 51.73 16 14 O -1.00 -19.68 16.45 -57.17 -0.94 -20.62 16 15 O -0.96 -22.31 17.11 -57.17 -0.98 -23.29 16 16 N -1.13 -15.06 5.53 -4.66 -0.03 -15.09 16 17 C 0.16 1.76 2.78 -67.66 -0.19 1.58 16 18 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16 19 C -0.12 -0.93 5.43 -26.45 -0.14 -1.08 16 20 C -0.04 -0.27 5.95 -27.73 -0.16 -0.43 16 21 C -0.03 -0.27 6.76 -82.50 -0.56 -0.83 16 22 C -0.01 -0.07 7.11 -83.12 -0.59 -0.66 16 23 N -0.26 -3.96 12.40 33.16 0.41 -3.55 16 24 N -0.10 -1.34 13.19 60.35 0.80 -0.55 16 25 N -0.29 -2.82 3.73 -64.01 -0.24 -3.06 16 26 C 0.08 0.33 11.27 59.85 0.67 1.01 16 27 C -0.06 -0.73 5.91 -27.72 -0.16 -0.90 16 28 H 0.08 1.59 6.59 -51.93 -0.34 1.25 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.86 7.24 -51.93 -0.38 0.49 16 32 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 33 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 34 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.41 4.67 8.84 -34.47 -0.30 4.37 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.16 7.96 -51.93 -0.41 -0.25 16 44 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 45 H 0.10 1.37 6.75 -51.93 -0.35 1.02 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -36.99 376.76 -8.44 -45.43 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.68 Total: 0.30 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.20 Total: -8.51 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: 1.36 Total: -67.53 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.92 Total: -43.91 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 52.38 SS G_CDS: -0.65 Total: 51.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.99 -8.44 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594479019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.807 kcal (2) G-P(sol) polarization free energy of solvation -36.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds