Wall clock time and date at job start Wed Apr 1 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00345 * 85.00030 * 3 2 1 5 5 C 1.50701 * 109.46992 * 274.99969 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 S 1.65605 * 119.99873 * 265.00002 * 3 2 1 14 14 O 1.42099 * 106.40321 * 23.53841 * 13 3 2 15 15 O 1.42097 * 106.40157 * 156.45960 * 13 3 2 16 16 N 1.65600 * 107.21849 * 270.00247 * 13 3 2 17 17 C 1.46497 * 120.00355 * 64.99677 * 16 13 3 18 18 H 1.09000 * 109.44941 * 24.95680 * 17 16 13 19 19 C 1.53108 * 109.45381 * 144.88835 * 17 16 13 20 20 C 1.53440 * 109.54714 * 190.09547 * 19 17 16 21 21 C 1.50537 * 108.32098 * 310.25402 * 20 19 17 22 22 C 1.35585 * 124.29834 * 16.48872 * 21 20 19 23 23 N 1.32913 * 106.67463 * 180.14353 * 22 21 20 24 24 N 1.29016 * 108.63297 * 359.90438 * 23 22 21 25 25 N 1.29106 * 110.26391 * 0.02562 * 24 23 22 26 26 C 1.46504 * 126.01249 * 180.02562 * 25 24 23 27 27 C 1.50598 * 124.16478 * 0.16125 * 22 21 20 28 28 H 1.08998 * 109.47325 * 300.00280 * 1 2 3 29 29 H 1.09001 * 109.47323 * 59.99729 * 1 2 3 30 30 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47325 * 239.99720 * 2 1 3 32 32 H 1.09000 * 109.47454 * 119.99496 * 2 1 3 33 33 H 1.09002 * 109.47391 * 154.99959 * 4 3 2 34 34 H 1.09001 * 109.46813 * 35.00015 * 4 3 2 35 35 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 36 36 H 0.97006 * 119.99802 * 245.00228 * 16 13 3 37 37 H 1.09003 * 109.45728 * 310.11486 * 19 17 16 38 38 H 1.09007 * 109.45663 * 70.05914 * 19 17 16 39 39 H 1.09003 * 109.67226 * 190.56200 * 20 19 17 40 40 H 1.09001 * 109.71629 * 69.97748 * 20 19 17 41 41 H 1.08993 * 109.46861 * 269.97863 * 26 25 24 42 42 H 1.09005 * 109.46710 * 29.97522 * 26 25 24 43 43 H 1.08992 * 109.47223 * 149.97403 * 26 25 24 44 44 H 1.09008 * 109.68611 * 256.82434 * 27 22 21 45 45 H 1.09001 * 109.72338 * 136.26767 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4674 2.7943 8 7 1.7680 3.6310 3.5749 9 14 -0.9168 4.2355 3.2553 10 1 -1.9379 3.1683 3.4086 11 1 -0.7749 4.9731 4.5364 12 1 -1.3405 5.1764 2.1873 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4449 15 8 2.3056 3.5186 -1.1999 16 7 4.0143 1.8136 -1.7138 17 6 4.4656 0.4413 -1.9569 18 1 3.6368 -0.1498 -2.3465 19 6 5.6069 0.4530 -2.9775 20 6 5.9117 -0.9832 -3.4234 21 6 6.0651 -1.8380 -2.1938 22 6 5.6431 -1.4790 -0.9562 23 7 5.9546 -2.4817 -0.1413 24 7 6.5323 -3.4077 -0.8293 25 7 6.6164 -3.0573 -2.0690 26 6 7.2092 -3.8491 -3.1497 27 6 4.9586 -0.1751 -0.6413 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.9080 2.8919 1.1512 34 1 2.4690 1.4183 2.0480 35 1 1.6882 4.1509 4.3900 36 1 4.6541 2.5428 -1.7198 37 1 5.3139 1.0474 -3.8430 38 1 6.4965 0.8887 -2.5225 39 1 6.8365 -1.0000 -4.0001 40 1 5.0910 -1.3609 -4.0333 41 1 8.2699 -3.6126 -3.2336 42 1 7.0898 -4.9101 -2.9302 43 1 6.7090 -3.6139 -4.0890 44 1 5.6635 0.5027 -0.1595 45 1 4.1113 -0.3548 0.0204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594479019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:29 Heat of formation + Delta-G solvation = -11.989962 kcal Electronic energy + Delta-G solvation = -29501.740843 eV Core-core repulsion = 25488.900704 eV Total energy + Delta-G solvation = -4012.840139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.37879 -39.07117 -38.15158 -37.67677 -36.80339 -35.85044 -34.61937 -34.49475 -31.42318 -31.27372 -29.87467 -28.65572 -28.57480 -24.97234 -24.67101 -23.56191 -23.40500 -22.31175 -20.98428 -20.33053 -18.78221 -18.51344 -18.21926 -17.95411 -17.78067 -17.16338 -16.60354 -16.14485 -15.80092 -15.26822 -15.13627 -14.89758 -14.76875 -14.64295 -14.52573 -14.07714 -14.02681 -13.63458 -13.60835 -13.53295 -13.28426 -13.11385 -13.08847 -12.96008 -12.82558 -12.75601 -12.74190 -12.55444 -12.23225 -12.21236 -12.13922 -11.86348 -11.63666 -11.61464 -11.46096 -10.88767 -10.59222 -10.51250 -9.83143 -9.78756 -8.14975 -6.24439 -0.28253 0.60290 1.40646 1.43613 1.49018 1.50377 1.53992 2.03023 2.43389 2.67060 3.16144 3.19762 3.44818 3.64431 3.71561 3.78681 3.84910 3.96234 4.10642 4.21526 4.33168 4.36267 4.48051 4.52457 4.57308 4.61968 4.64226 4.69974 4.74596 4.95181 4.97267 4.99461 5.06743 5.15320 5.19682 5.25639 5.28530 5.34737 5.49564 5.60104 5.72079 5.77455 5.92753 6.15912 6.21652 6.83438 7.43081 7.50301 8.92609 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.003368 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.817666 B = 8311.286973 C = 8876.835553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 N -0.995 5.995 4 C 0.276 3.724 5 C -0.538 4.538 6 H 0.057 0.943 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.950 3.050 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.277 1.277 13 S 2.793 3.207 14 O -1.003 7.003 15 O -1.010 7.010 16 N -1.110 6.110 17 C 0.152 3.848 18 H 0.093 0.907 19 C -0.116 4.116 20 C -0.036 4.036 21 C -0.009 4.009 22 C -0.034 4.034 23 N -0.305 5.305 24 N -0.131 5.131 25 N -0.276 5.276 26 C 0.066 3.934 27 C -0.056 4.056 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.017 0.983 34 H 0.024 0.976 35 H 0.265 0.735 36 H 0.425 0.575 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.131 0.869 44 H 0.088 0.912 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.031 -13.601 -19.476 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.836 5.836 4 C 0.153 3.847 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.203 1.203 13 S 2.801 3.199 14 O -0.986 6.986 15 O -0.994 6.994 16 N -0.871 5.871 17 C 0.044 3.956 18 H 0.111 0.889 19 C -0.155 4.155 20 C -0.076 4.076 21 C -0.145 4.145 22 C -0.176 4.176 23 N -0.168 5.168 24 N -0.109 5.109 25 N -0.069 5.069 26 C -0.073 4.073 27 C -0.097 4.097 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.262 0.738 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.150 0.850 44 H 0.107 0.893 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.715 -14.348 -18.830 26.872 hybrid contribution -0.536 1.350 0.638 1.586 sum 12.179 -12.998 -18.193 25.461 Atomic orbital electron populations 1.22223 0.96532 1.02384 1.01777 1.21210 0.94822 0.81200 1.02626 1.57624 1.79277 1.23686 1.23040 1.18555 0.95526 0.90294 0.80366 1.21848 0.97393 1.31840 1.06695 0.92497 1.25699 0.99962 0.96719 0.96436 1.70007 1.31000 1.41497 1.14097 0.85731 0.80428 0.78888 0.77407 1.19016 1.20504 1.20270 1.01391 0.73791 0.72045 0.72643 1.93519 1.71443 1.76319 1.57337 1.93581 1.86362 1.33392 1.86112 1.55859 1.28083 1.15193 1.88012 1.20958 0.99360 0.80798 0.94446 0.88884 1.21905 0.97549 0.96849 0.99229 1.20377 1.05737 0.90943 0.90526 1.22356 1.03021 0.89099 1.00014 1.21717 1.06486 0.98415 0.90962 1.74779 1.13478 1.00532 1.28016 1.78495 1.21100 1.21862 0.89411 1.47272 1.37581 1.13178 1.08842 1.22794 1.01033 0.96897 0.86564 1.20535 1.00116 0.90198 0.98856 0.92884 0.93823 0.89924 0.89719 0.90386 0.96485 0.95753 0.92620 0.73847 0.87305 0.89543 0.85784 0.87156 0.87032 0.87423 0.85042 0.89321 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 9.83 71.98 0.71 -5.28 16 2 C 0.13 4.37 4.83 86.38 0.42 4.79 16 3 N -1.00 -40.31 2.78 -519.85 -1.44 -41.75 16 4 C 0.28 13.90 5.12 85.63 0.44 14.34 16 5 C -0.54 -30.29 8.41 25.60 0.22 -30.07 16 6 H 0.06 3.19 6.89 -2.91 -0.02 3.17 16 7 C 0.01 0.62 5.46 84.66 0.46 1.08 16 8 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 9 Si 0.95 45.24 29.54 68.60 2.03 47.27 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 S 2.79 105.28 6.03 -56.49 -0.34 104.94 16 14 O -1.00 -38.60 16.45 -128.00 -2.11 -40.71 16 15 O -1.01 -47.74 17.11 -128.00 -2.19 -49.93 16 16 N -1.11 -28.54 5.53 -168.65 -0.93 -29.47 16 17 C 0.15 3.17 2.78 45.17 0.13 3.30 16 18 H 0.09 1.99 7.10 -2.39 -0.02 1.97 16 19 C -0.12 -1.37 5.43 30.78 0.17 -1.20 16 20 C -0.04 -0.30 5.95 29.94 0.18 -0.12 16 21 C -0.01 -0.16 6.76 41.50 0.28 0.12 16 22 C -0.03 -0.87 7.11 41.75 0.30 -0.57 16 23 N -0.30 -9.65 12.40 -48.99 -0.61 -10.26 16 24 N -0.13 -3.55 13.19 37.02 0.49 -3.06 16 25 N -0.28 -4.78 3.73 -356.42 -1.33 -6.11 16 26 C 0.07 0.29 11.27 127.77 1.44 1.73 16 27 C -0.06 -1.41 5.91 29.96 0.18 -1.23 16 28 H 0.05 2.14 6.59 -2.39 -0.02 2.12 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.45 7.24 -2.39 -0.02 2.43 16 32 H 0.08 2.60 8.00 -2.39 -0.02 2.58 16 33 H 0.02 0.92 7.61 -2.39 -0.02 0.91 16 34 H 0.02 1.27 8.00 -2.39 -0.02 1.25 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.43 9.14 8.84 -96.74 -0.85 8.29 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 0.93 8.12 -2.38 -0.02 0.91 16 39 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 43 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 44 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.08 2.20 6.75 -2.39 -0.02 2.18 16 Total: -1.00 -83.98 376.76 -1.08 -85.06 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.16 Total: 11.84 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.91 Total: -13.12 kcal Atomic # 7 Polarization: -141.82 SS G_CDS: -3.54 Total: -145.36 kcal Atomic # 8 Polarization: -86.34 SS G_CDS: -4.29 Total: -90.64 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 105.28 SS G_CDS: -0.34 Total: 104.94 kcal Total: -83.98 -1.08 -85.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594479019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.075 kcal (2) G-P(sol) polarization free energy of solvation -83.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds